Chromatin Profiling Techniques: Exploring the Chromatin Environment and Its Contributions to Complex Traits

The genetic architecture of complex traits is multifactorial. Genome-wide association studies (GWASs) have identified risk loci for complex traits and diseases that are disproportionately located at the non-coding regions of the genome. On the other hand, we have just begun to understand the regulatory roles of the non-coding genome, making it challenging to precisely interpret the functions of non-coding variants associated with complex diseases. Additionally, the epigenome plays an active role in mediating cellular responses to fluctuations of sensory or environmental stimuli. However, it remains unclear how exactly non-coding elements associate with epigenetic modifications to regulate gene expression changes and mediate phenotypic outcomes. Therefore, finer interrogations of the human epigenomic landscape in associating with non-coding variants are warranted. Recently, chromatin-profiling techniques have vastly improved our understanding of the numerous functions mediated by the epigenome and DNA structure. Here, we review various chromatin-profiling techniques, such as assays of chromatin accessibility, nucleosome distribution, histone modifications, and chromatin topology, and discuss their applications in unraveling the brain epigenome and etiology of complex traits at tissue homogenate and single-cell resolution. These techniques have elucidated compositional and structural organizing principles of the chromatin environment. Taken together, we believe that high-resolution epigenomic and DNA structure profiling will be one of the best ways to elucidate how non-coding genetic variations impact complex diseases, ultimately allowing us to pinpoint cell-type targets with therapeutic potential.     

Quantification of anhydrous ethanol and detection of adulterants in commercial Brazilian gasoline by Raman spectroscopy

Raman spectroscopy can be used to evaluate the quality of fuels in a remote, rapid, and nondestructive manner without the need for reagents. In this study, Raman was used to quantify anhydrous ethanol in commercial gasoline and to detect peaks due to compounds commonly used for the adulteration of commercial gasoline. Samples of commercial gasoline were collected from fuel stations in the region of Santos, SP, Brazil. Samples of naphtha from the refinery, pure ethanol, and ethanol diluted in distilled water at concentrations close to the range used in the gasoline were also obtained and characterized. Raman spectra were collected using a dispersive Raman spectrometer (830?nm, 2?cm^?1 resolution in the 400–1800?cm^?1 spectral range). As expected, the spectra of commercial gasoline showed pronounced peaks of naphtha and ethanol. By using the peak intensities of the ethanol diluted in water, the ethanol concentration was found to be in the range of 27%?±?1% in most of the samples; some samples presented ethanol concentrations as high as 28.8%, suggesting adulteration. Some samples presented peaks at 766, 798, and 995?cm^?1 with higher intensities, suggesting the presence of an adulterant with organic characteristics, such as solvents with aromatic rings. Raman spectroscopy has been shown to be effective in determining the adulteration of commercial gasoline, which may contribute to rapid quality control of fuels at the point of sale.     

Assessment of heavy metals remobilization by fractionation: comparison of leaching tests applied to roadside sediments

The pollution emitted by traffic activities and road maintenance is an area of great interest as contaminants can be transported to roadside sediments and pose a risk to environmental and human health. In the presentwork, deposited pollution in roadside sediments has been assessed by sampling along a highly traveled highway in Barcelona and the surrounding area. The available amounts of the heavy metals was determined by applying different leaching tests and calculating the concentration enrichment ratio (CER) and the environmental concentration guideline values (ECG). To gain information on the heavy metals (HMs) fractionation, the sequential extraction scheme (SES), established by the Standard Measurement and Testing (SM&T), was implemented, and the results were compared with those obtained by single leaching tests. An anthropogenic enhancement of certain metals was observed after considering both the CER and ECG values. However, if only ECG values were considered, an overestimation of the anthropogenically enhanced pollutants was obtained due to disregarding geochemical and particle size variability. CER values provide a more realistic assessment by determining different levels of anthropogenic impact. Thus, CER values suggest a minimum anthropogenic apportion for metals such as Cd, Cr, and Ni, whereas different situations from significant to extreme anthropogenic contribution were observed for Zn, Pb, and Cu. These results have been complemented by other leaching tests that minimize the time-consuming environmental evaluation. In this study, HCI extraction produces suitable results for a quick screening since they correlate well with the corresponding SES: Cu(r2 = 0.798), Pb(r2 = 0.958) and Zn(r2 = 0.901). Mild extractants have been observed to be limited to highly polluted samples due to their low leaching power. The information obtained following this procedure helps to identify hazardous areas that need a remedial strategy.     

A theoretical and experimental study of phosphate ester inhibitors for AISI 1018 in carbon dioxide-saturated 3.5 wt% NaCl solution

Phosphate ester was investigated as a corrosion inhibitor for AISI 1018 carbon steel in carbon dioxide-saturated chloride solutions at different temperatures and pressures. The corrosion tests were realized by electrochemical techniques, weight loss measurements, bubble tests, and a high-pressure/high-temperature autoclave system. The corrosion tests demonstrated that the investigated molecule is an excellent corrosion inhibitor. The inhibiting effect is even bigger at high pressure and temperature than at atmospheric pressure and room temperature. The thermodynamic parameters were calculated and determined to obey the Langmuir isotherm. Polarization studies revealed that the evaluated inhibitor is a mixed type.     

A pragmatic approach to hierarchical categorization of research expertise in the presence of scarce information

International Journal on Digital Libraries - Throughout the history of science, different knowledge areas have collaborated to overcome major research challenges. The task of associating a...