短小芽孢杆菌基因无痕修饰系统的建立及应用

为了实现对短小芽孢杆菌(Bacillus pumilus)SCU11基因组连续地无痕改造,提高碱性蛋白酶产量,本文建立了基于Upp基因反向筛选的短小芽孢杆菌基因无痕修饰系统,将碱性蛋白酶基因AprE的1份拷贝无痕插入至短小芽孢杆菌染色体16S rDNA区.摇瓶发酵实验显示,突变菌株碱性蛋白酶活最高达到7125 U/mL,与出发菌株相比提高了33.1%.结果表明利用该系统可实现对短小芽孢杆菌基因组的无痕修饰,对AprE插入突变菌株进行双交换筛选的最终效率约为23.07%.     

短小芽孢杆菌sRNA Bpsr112的鉴定及功能研究

为了给短小芽孢杆菌的改造提供新思路,提高碱性蛋白酶产量,实验室前期对短小芽孢杆菌进行了转录组测序,预测了短小芽孢杆菌的sRNA.本研究通过生物信息学方法和Northern杂交鉴定了一个新的sRNA Bpsr112.然后构建了Bpsr112的敲除型菌株和过表达菌株,利用相关菌株进行了生长曲线、盐胁迫和蛋白酶活等实验,再利用SDS-PAGE检测胞外蛋白酶AprE的表达水平.结果表明,在发酵至60 h和72 h时,与对照菌株相比,敲除型菌株酶活显著降低（P<0.01）,过表达菌株酶活显著提高（P<0.01）;同时SDS-PAGE结果表明,AprE蛋白含量在敲除菌株中降低,在过表达菌株中提高,说明sRNA Bpsr112对短小芽孢杆菌蛋白酶活具有正调控.本研究鉴定了短小芽孢杆菌中的sRNA,并发现Bpsr112对蛋白酶活具有促进作用.     

绿色荧光蛋白(GFP)基因在短小芽孢杆菌中的组成型表达

采用PCR技术,亚克隆来自短小芽孢杆菌总基因组中的启动子活性片段F1,构建了一个大肠杆菌-短小芽孢杆菌穿梭表达载体pHY300-F1gfp,以缺失启动子的绿色荧光蛋白(GFP)基因为报告基因,检测了该片段在短小芽孢杆菌DX01菌株中的启动活性,在荧光显微镜下,观察到了明亮的绿色荧光,证实活性片段F1具有组成型启动子的功能,GFP基因在短小芽孢杆菌中实现了组成型表达．     

含Cry1Ab/Ac基因的白僵菌工程菌的构建

以来源于苏云金芽孢杆菌的Bt-Cry1Ab/Ac基因为目的基因,以潮霉素Hyg为抗性标记基因,以绿色荧光蛋白基因GFP为报告基因的真菌表达载体,采用农杆菌介导真菌遗传转化(ATMT)法,将Cry1Ab/Ac基因插入白僵菌基因组中,先后用潮霉素B抗性筛选、荧光检测、真菌基因组PCR分子检测法、Bt-Cry1Ab/Ac基因检测试纸条多种方法进行转基因工程菌株鉴定,结果证实了目的基因成功插入白僵菌基因组,为白僵菌杀虫活性的深入研究奠定了基础.     

核盘菌交配型基因mat1-1敲除载体的构建及转化

利用根癌农杆菌介导真菌遗传转化方法对核盘菌的交配型基因mat1-1进行基因同源重组的敲除对比实验,获得了缺失mat1-1基因的转化菌株.先利用PCR方法获得mat1-1基因的左右两侧片段,将测序正确的两个侧翼片段分别重组到农杆菌转化载体PBI-G3C中,并将新霉素抗性标记引入农杆菌转化载体PBI-G3C中,构建成农杆菌介导转化核盘菌的打靶载体ΔPBI-G3CN-mat1-1,再将ΔPBI-G3CN-mat1-1质粒转化至根癌农杆菌EHA105中.利用核盘菌菌丝进行转化,将得到的转化菌株,利用PCR方法进行验证,证实有敲除菌株存在.通过对敲除菌株进行生理表型的测定发现,缺失mat1-1基因的敲除菌株其生长速度与野生核盘菌菌株相比无明显差异,但敲除菌株不能产生菌核与子囊盘.     

一株短小芽孢杆菌的16S rDNA基因序列分析

从黄颡鱼中分离得到一株优势菌BP-1,经过形态观察、生理生化试验和16S rDNA基因序列分析,表明该菌为发酵型,能运动,革兰氏阳性杆菌.获得的16S rDNA基因序列长度为1478 bp,Gen Bank数据库中登录号为KP299290.该序列与GenBank数据库中多条短小芽孢杆菌16S rDNA基因序列相似性高达99%,系统进化树上与短小芽孢杆菌亲缘关系最近,从而判定菌株BP-1为短小芽孢杆菌.这为短小芽孢杆菌的鉴定和分类提供科学依据.     

根癌农杆菌介导的丝状真菌简青霉遗传转化的研究

利用根癌农杆菌LBA4404介导,建立了丝状真菌简青霉(Penicillium simpli-cissimum)H5的遗传转化系统.潮霉素抗性筛选、PCR和Southern blot分子鉴定等结果表明:筛选获得的转化子能够稳定遗传,外源的T-DNA以单拷贝随机整合到简青霉的基因组中.实验初步研究了农杆菌浓度、乙酰丁香酮浓度和共培养时间等因素对转化效率的影响,经过优化后转化体系的效率可达50个转化子/105个孢子.农杆菌介导的遗传转化方法在简青霉上的运用,将为研究该菌的基因工程改造提供强有力的工具.     

农杆菌介导东方百合“西伯利亚”遗传转化体系建立

以东方百合"西伯利亚"(Lilium seberia)为材料,建立了百合再生和农杆菌介导的遗传转化体系.采用LBA4404和GV3101菌株对鳞片来源的愈伤组织进行侵染,并以鳞片作为对比转化材料,两种菌株携带有相同的双元载体pCAMBIA1301.研究结果表明,农杆菌侵染愈伤组织外植体转化率较高;乙酰丁香酮(AS)的添加能大大提高根癌农杆菌转化百合的效率.另外,共培养时间、不同菌株均对转化效率有一定的影响.筛选后获得的抗性植株经PCR检测和GUS组织化学染色证实外源基因已经整合到基因组DNA中并获得表达,转化率为5%～8%.     

芽孢缺失对D-核糖产量的影响

利用原生质体紫外线诱变的方法处理转酮酶缺陷型短小芽孢杆菌,选育到一株丧失芽孢形成能力的转酮酶缺陷型短小芽孢杆菌,摇瓶培养D-核糖平均产量达到66g/L,较出发菌株提高38%.研究表明,芽孢生成缺陷有利于D-核糖的产生,筛选芽孢生成能力缺陷的菌株是选育D-核糖高产菌株的有效手段.     

成孢延迟蛋白基因对枯草芽孢杆菌生物量和发酵酶活力的影响

探讨同种相噬对枯草芽孢杆菌内源酶发酵活力的影响.应用同源重组敲除的方法,构建了枯草芽孢杆菌168菌株的编码成孢延迟蛋白毒素前体的基因sdp C的knock-in突变株,比较了突变株和出发菌株的生物量、芽孢数和α-淀粉酶发酵活力.与出发菌株相比,突变株的生物量、芽孢数和α-淀粉酶发酵活力均显著提高,产酶高峰期酶活力提高23%.本研究结果显示,sdp基因突变不仅能够提高枯草芽孢杆菌的生物量,还能够提高其内源酶的发酵活力.     

An Index mechanism for multi-scale view in spatial databases

There are numerous geometric objects stored in the spatial databases. An importance function in a spatial database is that users can browse the geometric objects as a map efficiently. Thus the spatial database should display the geometric objects users concern about swiftly onto the display window. This process includes two operations:retrieve data from database and then draw them onto screen. Accordingly, to improve the efficiency, we should try to reduce time of both retrieving object and displaying them. The former can be achieved with the aid of spatial index such as R-tree, the latter require to simplify the objects. Simplification means that objects are shown with sufficient but not with unnecessary detail which depend on the scale of browse. So the major problem is how to retrieve data at different detail level efficiently. This paper introduces the implementation of a multi-scale index in the spatial database SISP (Spatial Information Shared Platform) which is generalized from R-tree. The difference between the generalization and the R-tree lies on two facets: One is that every node and geometric object in the generalization is assigned with a importance value which denote the importance of them, and every vertex in the objects are assigned with a importance value,too. The importance value can be use to decide which data should be retrieve from disk in a query. The other difference is that geometric objects in the generalization are divided into one or more sub-blocks, and vertexes are total ordered by their importance value. With the help of the generalized R-tree, one can easily retrieve data at different detail levels.Some experiments are performed on real-life data to evaluate the performance of solutions that separately use normal spatial index and multi-scale spatial index. The results show that the solution using multi-scale index in SISP is satisfying.     

Characterization of Ordovician carbonate reservoirs, southeastern Saskatchewan, Canada

The discovery of the prolific Ordovician Red River reservoirs in 1995 in southeastern Saskatchewan was the catalyst for extensive exploration activity which resulted in the discovery of more than 15 new Red River pools. The best yields of Red River production to date have been from dolomite reservoirs. Understanding the processes of dolomitization is, therefore, crucial for the prediction of the connectivity, spatial distribution and heterogeneity of dolomite reservoirs.The Red River reservoirs in the Midale area consist of 3～4 thin dolomitized zones, with a total thickness of about 20 m, which occur at the top of the Yeoman Formation. Two types of replacement dolomite were recognized in the Red River reservoir: dolomitized burrow infills and dolomitized host matrix. The spatial distribution of dolomite suggests that burrowing organisms played an important role in facilitating the fluid flow in the backfilled sediments. This resulted in penecontemporaneous dolomitization of burrow infills by normal seawater. The dolomite in the host matrix is interpreted as having occurred at shallow burial by evaporitic seawater during precipitation of Lake Almar anhydrite that immediately overlies the Yeoman Formation. However, the low δ18O values of dolomited burrow infills (-5.9‰～ -7.8‰, PDB) and matrix dolomites (-6.6‰～ -8.1‰, avg. -7.4‰ PDB) compared to the estimated values for the late Ordovician marine dolomite could be attributed to modification and alteration of dolomite at higher temperatures during deeper burial, which could also be responsible for its 87Sr/86Sr ratios (0.7084～0.7088) that are higher than suggested for the late Ordovician seawaters (0.7078～0.7080). The trace amounts of saddle dolomite cement in the Red River carbonates are probably related to "cannibalization" of earlier replacement dolomite during the chemical compaction.     

A computer generator for randomly layered structures

AcomputergeneratorforrandomlylayeredstructuresYUJia shun1,2,HEZhen hua2(1.TheInstituteofGeologicalandNuclearSciences,NewZealand;2.StateKeyLaboratoryofOilandGasReservoirGeologyandExploitation,ChengduUniversityofTechnology,China)Abstract:Analgorithmisintrod…     

Perspherical Approaches for Electrons in Atoms and Charged Excitons in Quantum Wells

Instead of following Fock’s expansion,we solve the Schrodinger equation for some quantum mechanical manybody systems such as electrons in atoms and charged excitons in quantum wells in a similar way in hyperspherical coordinates by expanding the wave functions into orthonormal complete basis sets of the hyperspherical hannonics(HHs)of hyperangles and generalized Laguerre polynomials(GLPs)of the hyperradius.This leads the equation to     

Advances in broadband wireless communications under high-mobility scenarios

Future mobile communication systems aim at providing very high data transmission rates, even in high-mobility scenarios such as high-speed wheel-track trains, maglev trains, highway vehicles, airplanes, guided missiles or spacecraft. A particularly important commercial application is the strong and increasing worldwide demand for high- speed broadband wireless communications （up to 574.8 km/ h test speeds or 380 km/h commercial speeds） in railways, providing data, voice and video services for applications such as onboard entertainment services to passengers, train control, train dispatch, train sensor status handling and sur- veillance. In such high-mobility scenarios, there are a number of communication challenges, including fast hand- over, location updating, high-speed channel modeling, estimation and equalization, anti-Doppler spreading tech- niques, fast power control, and dedicated network architec- ture. Because signal transmission in very high-speed scenarios will inevitably experience serious deterioration, it is imperative to develop key broadband mobile communi- cation techniques for such high-speed vehicles.     

Wuhan University Journal of Natural Sciences TOTAL CONTENTS

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海南岛地体及其毗邻陆缘晚中生代—新生代古地磁研究和构造演化

本文叙述了对海南岛及其毗邻大陆边缘白垩纪到第四纪地层岩石进行古地磁研究的全部工作过程。通过分析岩石中剩余磁矢量的磁偏角及磁倾角的变化,提出海南岛白垩纪以来经历的构造演化模式如下:早期伴随顺时针旋转而向南迁移,后期伴随逆时针转动并向北运移。联系该地区及邻区的地质、地球物理资料,对海南岛上述的构造地体运动提出以下认识:北部湾内早期有一拉张作用,主要是该作用使湾内地壳显著伸长减薄,形成北部湾盆地。从而导致了海南岛的早期构造运动,而海南岛后期的构造运动则主要是受南海海底扩张的影响。海南地体运动规律的阐明对于了解北部湾油气盆地的形成演化有重要的理论和实际意义。     

Scale-based spatial data model for GIS

Being the primary media of geographical information and the elementary objects manipulated, almost all of maps adopt the layer-based model to represent geographic information in the existent GIS. However, it is difficult to extend the map represented in layer-based model. Furthermore, in Web-Based GIS, It is slow to transmit the spatial data for map viewing. In this paper, for solving the questions above, we have proposed a new method for representing the spatial data. That is scale-based model. In this model we represent maps in three levels: scale-view, block, and spatial object, and organize the maps in a set of map layers, named Scale-View, which associates some given scales.Lastly, a prototype Web-Based GIS using the proposed spatial data representation is described briefly.     

Exciton Seebeck in Molecular Systems

Various applications relevant to the exciton dynamics,such as the organic solar cell,the large-area organic light-emitting diodes and the thermoelectricity,are operating under temperature gradient.The potential abnormal behavior of the exicton dynamics driven by the temperature difference may affect the efficiency and performance of the corresponding devices.In the above situations,the exciton dynamics under temperature difference is mixed with     

Achieving Unusual States of Matter Under High Pressure

The elongation method,originally proposed by Imamura was further developed for many years in our group.As a method towards O(N)with high efficiency and high accuracy for any dimensional systems.This treatment designed for one-dimensional(ID)polymers is now available for three-dimensional(3D)systems,but geometry optimization is now possible only for 1D-systems.As an approach toward post-Hartree-Fock,it was also extended to