The significance of the alkene size and the nature of the metal ion in metal-alkene complexes: a theoretical study

Cation interactions with π-systems are a problem of outstanding contemporary interest and the nature of these interactions seems to be quite different for transition and main group metal ions. In this paper, we have systematically analyzed the contrast in the bonding of Cu(+) and main group metal ions. The molecular structures and energetics of the complexes formed by various alkenes (A = C(n)H(2n), n = 2-6; C(n)H(2n- 2), n = 3-8 and C(n)H(2n + 2), n = 5-10) and metal ions (M = Li(+), Na(+), K(+), Ca(2+), Mg(2+), Cu(+) and Zn(2+)) are investigated by employing ab initio post Hartree-Fock (MP2/6-311++G**) calculations and are reported in the current study. The study, which also aims to evaluate the effect of the size of the alkyl portion attached to the π-system on the complexation energy, indicates a linear relationship between the two. The decreasing order of complexation energy with various metal ion-alkene complexes follows the order Zn(2+)-A > Mg(2+)-A > Ca(2+)-A > Cu(+)-A > Li(+)-A > Na(+)-A > K(+)-A. The increased charge transfer and the electron density at (3,-1) intermolecular bond critical point corroborates well with the size of the π-system and the complexation energy. The observed deviation from the linear dependency of the Cu(+)-A complexes is attributed to the dπ→π* back bonding interaction. An energy decomposition analysis via the reduced variational space (RVS) procedure was also carried out to analyze which component among polarization, charge transfer, coulomb and exchange repulsion contributes to the increase in the complexation energy. The RVS results suggest that the polarization component significantly contributes to the increase in the complexation energy when the alkene size increases.     

内含式化合物X@Al12P12的结构与稳定性研究

采用B3LYP／6—31G*方法,对内含式化合物X@Al12P12(X=Li^0/ ,Na^0/ ,K^0/2 ,Be^0/2 ,Mg^0/2 ,Ca^0/2 ,H和He)的不同对称性构型进行计算,讨论其最稳定构型的几何参数、布居分析、偶极矩、电离势、包含能、频率、HOMO—LUMO能隙和自旋密度．发现X@Al12P12化合物中,客体X=Na^0/ ,K^0/ ,Mg和He几乎处在笼的中心,Be和Ca^0/2 处在中心附近0．033nm的半径内,Li^0/ ,Be^2 ,Mg^2 和H很大程度上偏离笼的中心位置．大部分金属内含式化合物的C3对称性构型稳定．Li^0/ 。,Be^0/2 ,Mg^2 ,Ca^2 和H与其它离子相比更易嵌入笼内形成稳定的内含式化合物．     

Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure of glycine and zwitterionic glycine

Interactions between metal ions and amino acids are common both in solution and in the gas phase. Here, the effect of metal ions and water on the structure of glycine is examined. The effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water on structures of Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (m = 0, 2, 5) complexes have been determined theoretically by employing the hybrid B3LYP exchange-correlation functional and using extended basis sets. Selected calculations were carried out also by means of CBS-QB3 model chemistry. The interaction enthalpies, entropies, and Gibbs energies of eight complexes Gly.Mn+ (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) were determined at the B3LYP density functional level of theory. The computed Gibbs energies DeltaG degrees are negative and span a rather broad energy interval (from -90 to -1100 kJ mol(-1)), meaning that the ions studied form strong complexes. The largest interaction Gibbs energy (-1076 kJ mol(-1)) was computed for the NiGly2+ complex. Calculations of the molecular structure and relative stability of the Gly.Mn+(H2O)m and GlyZwitt.Mn+(H2O)m (Mn+ = Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+; m = 0, 2, and 5) systems indicate that in the complexes with monovalent metal cations the most stable species are the NO coordinated metal cations in non-zwitterionic glycine. Divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ prefer coordination via the OO bifurcated bonds of the zwitterionic glycine. Stepwise addition of two and five water molecules leads to considerable changes in the relative stability of the hydrated species. Addition of two water molecules at the metal ion in both Gly.Mn+ and GlyZwitt.Mn+ complexes reduces the relative stability of metallic complexes of glycine. For Mn+ = Li+ or Na+, the addition of five water molecules does not change the relative order of stability. In the Gly.K+ complex, the solvation shell of water molecules around K+ ion has, because of the larger size of the potassium cation, a different structure with a reduced number of hydrogen-bonded contacts. This results in a net preference (by 10.3 kJ mol(-1)) of the GlyZwitt.K+H2O5 system. Addition of five water molecules to the glycine complexes containing divalent cations Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+ results in a net preference for non-zwitterionic glycine species. The computed relative Gibbs energies are quite high (-10 to -38 kJ mol(-1)), and the NO coordination is preferred in the Gly.Mn+(H2O)5 (Mn+ = Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) complexes over the OO coordination.     

Effect of metal ions (Li+, Na+, K+, Mg2+, Ca2+, Ni2+, Cu2+, and Zn2+) and water coordination on the structure and properties of L-arginine and zwitterionic L-arginine

Interactions between metal ions and amino acids are common both in solution and in the gas phase. The effect of metal ions and water on the structure of L-arginine is examined. The effects of metal ions (Li(+), Na(+), K(+), Mg(2+), Ca(2+), Ni(2+), Cu(2+), and Zn(2+)) and water on structures of Arg x M(H2O)m , m = 0, 1 complexes have been determined theoretically by employing the density functional theories (DFT) and using extended basis sets. Of the three stable complexes investigated, the relative stability of the gas-phase complexes computed with DFT methods (with the exception of K(+) systems) suggests metallic complexes of the neutral L-arginine to be the most stable species. The calculations of monohydrated systems show that even one water molecule has a profound effect on the relative stability of individual complexes. Proton dissociation enthalpies and Gibbs energies of arginine in the presence of the metal cations Li(+), Na(+), K(+), Mg(2+), Ca(2+), Ni(2+), Cu(2+), and Zn(2+) were also computed. Its gas-phase acidity considerably increases upon chelation. Of the Lewis acids investigated, the strongest affinity to arginine is exhibited by the Cu(2+) cation. The computed Gibbs energies DeltaG(o) are negative, span a rather broad energy interval (from -150 to -1500 kJ/mol), and are appreciably lowered upon hydration.     

磷酸二甲酯阴离子(DMP~-)与一价、二价金属离子 相互作用的理论研究

在B3LYP、HF和MP2水平上运用全电子从头算(AE)和相对论有效实势(RECP)及6-311+G**和LanL2DZ基组计算Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与磷酸二甲酯阴离子(DMP-)的相互作用。 RECP用于除Li+、Be2+外所有的金属离子。 对Na+、K+、Cu+、Mg2+、Ca2+、Zn2+用AE和RECP 2种方法处理。 结果表明:RECP能可靠地用于重金属离子络合物; 二价金属离子络合物(DMP-—M2+)比一价金属离子络合物 (DMP-—M+)稳定;二价金属离子(M2+)可能比一价金属离子(M+)更易使多核苷酸折叠。     

M+(C6H6复合物结构与成键性质的理论研究

应用密度泛函理论和多体微扰理论,对阳离子与苯形成的配合物M+-C6H6 (M = H+、Li+、Na+、K+、B+、Al+、Ga+、Mg+、Ca+、Mg2+、Ca2+)的平衡几何构型、稳定性和成键性质进行了研究。计算结果表明,H+-C6H6只能形成稳定的s配合物,而其它阳离子体系只能形成稳定的p 配合物。基于自然键轨道和相关前线分子轨道分析,讨论了阳离子-p 相互作用的本质。     

A [2]rotaxane-based (1)H NMR spectroscopic probe for the simultaneous identification of physiologically important metal ions in solution

We describe a [2]rotaxane molecule that exhibits distinct signals in its (1)H NMR spectra upon the complexation of physiologically important Li(+), Na(+), Mg(2+) and Ca(2+) ions; thus, the identification of these metal ions in solution is possible from the analysis of a single (1)H NMR spectrum of a single molecular sensor.     

Decationization and dealumination of clinoptilolite tuff and ammonium exchange on acid-modified tuff

The paper presents results of investigation of exchange of the clinoptilolite tuff cations with hydrogen ions from HCl solution of concentration 0.1 mmol cm(-3) and ammonium ions solutions of concentrations 0.0071 to 2.6 mmol cm(-3). Molal concentrations, x (mmol g(-1)) of cations exchanged in acid solution and in ammonium ions solutions were compared with molal concentrations of cations obtained by determination of the cation-exchange capacity of clinoptilolite tuff. The obtained results show that at ammonium ion concentrations lower than 0.1 mmol cm(-3), with regard to exchange capacity for particular ions, best exchanged are Na+ ions, followed by Mg2+ and Ca2+ ions, while exchange of K+ ions is the poorest (Na+ > Mg2+ > Ca2+ > K+). At ammonium concentrations from 0.2 to 1 mmol cm(-3) the order is Na+ > Ca2+ > Mg2+ > K+. At concentrations higher than 1 mmol cm(-3) the order is Na+ > Ca2+ > K+ > Mg2+. The results are a consequence of the uptake of hydrogen ions by zeolite samples in ammonium ions solutions at concentrations lower than 1 mmol cm(-3) and indicate the importance of Mg2+ (besides Na+ ions) for the exchange between clinoptilolite cations and H+ ions, in contrast to K+ ions, whose participation in the reaction with H+ ions is the lowest. During decationization of the clinoptilolite in acid solution, best exchanged are Na+, Mg2+, and Ca2+ ions, while exchange of K+ ions is the poorest. Due to poor exchange of K+ and H+ ions and good exchange of Na+, Mg2+, and Ca2+ ions, it is to be assumed that preservation of stability of the clinoptilolite structure is caused by K+ ions present in the channel C. Clinoptilolite is dissolved in the clinoptilolite A and B channels where Na+, Mg2+, and Ca2+ ions are present. On the acid-modified clinoptilolite samples, exchange of ammonium ions is poorer than on natural zeolite. The longer the contact time of the zeolite and acid solution, the worse ammonium ions exchange. It can be assumed that H+ ions exchanged with zeolite cations are consumed for solution of aluminum in the clinoptilolite structure; therefore the concentration of H+ ions as exchangeable cations decreases. In the ammonium ion solution at a concentration of 0.0065 mmol cm(-3), from the acid-modified zeolite samples, Al3+ ions are exchanged best, followed by Na+, Mg2+, Ca2+, and K+ ions. Further to the results, it is to be assumed that exchangeable Al3+ ions available from clinoptilolite dissolution are best exchanged with H+ ions in acid solution.     

Simultaneous ion chromatographic separation of anions and cations on poly(aspartic acid) functionalized silica

Poly(aspartic acid)-silica (PolyCAT A), originally designed for the cation-exchange chromatography of proteins, is proposed for the simultaneous ion chromatographic separation of inorganic anions and cations. This is possible owing to the zwitterion-exchange properties of this stationary phase, which are attributed to the presence of both protonated aminopropyl and dissociated carboxylic groups in poly(aspartic acid) attached to the silica. The retention of alkali metal (Li+, Na+, K+), alkaline earth metal (Mg2+, Ca2+), ammonium and inorganic anions (Cl-, H2PO4-, Br-, NO2-, I-, IO3-, NO3-, ClO4-, SCN-) was tested in aqueous solutions of sulfuric, perchloric, sulfosalicylic, citric, oxalic, maleic and aspartic acids with conductimetric detection. The effect of eluent pH, together with the concentration and characteristics of the eluting ions, were studied. Under optimum conditions (0.3 mmol dm(-3) H2SO4-0.2 mmol dm(-3) Li2SO4 eluent), the simultaneous separation of three anions (Cl-, H2PO4-, NO3-) and four cations (Na+, K+, Mg2+, Ca2+), on a PolyCAT A column (200 x 4.6 mm id, 5 microm film thickness) was achieved in 9 min.     

内含式化合物X@B12P12的结构与稳定性研究

采用B3LYP/6-31G*方法，对内含式化合物X@B₁₂P₁₂(X=Li^0/+、Na^0/+、K^0/+、Be^0/2+、Mg^0/2+、Ca^0/2+、H和He)的不同对称性构型进行了计算，讨论其最稳定构型的几何参数、布居分析、偶极矩、电离势、包含能、振动频率、能隙和自旋密度． 发现在X@B₁₂P₁₂化合物中，客体X=Li、Na^0/+、K^0/+、Mg^0/2+、Ca^0/2+和He处在偏离笼的中心0.006 nm的半径内． Be²⁺沿着C₃轴偏离中心点0.279 nm． 在Be@B₁₂P₁₂和H@B₁₂P₁₂的基态结构中，Be和H与笼上的B原子成键． 除Li@B₁₂P₁₂、 Be²⁺@B₁₂P₁₂和He@ B₁₂P₁₂外， 其余结构为C_s对称稳定构型．     

Favorable pendant-amino metal chelation in VX nerve agent model systems

We have performed DFT computational studies [B3LYP, 6-31+G] to obtain metal ion coordination isomers of VX-Me [MeP(O)(OMe)(SCH2CH2NMe2)], a model of two of the most lethal nerve agents: VX [MeP(O)(OEt)(SCH2CH2N(iPr)2)] and Russian-VX [MeP(O)(OCH2CHMe2)(SCH2CH2N(Et)2)]. Our calculations involved geometry optimizations of the neutral VX-Me model as well as complexes with H+, Li+, Na+, K+, Be2+, Mg2+, and Ca2+ that yielded 2-8 different stable chelation modes for each ion that involved mainly mono- and bidentate binding. Importantly, our studies revealed that the [O(P),N] bidentate binding mode, long thought to be the active mode in differentiating the hydrolytic path of VX from other nerve agents, was the most stable for all ions studied here. Binding energy depended mainly on ionic size as well as charge, with binding energies ranging from 364 kcal mol(-1) for Be2+ to 33 kcal mol(-1) for K+. Furthermore, calculated NMR shifts for VX-Me correlate to experimental values of VX.     

Local structure of magnesium in silicate glasses: a 25Mg 3QMAS NMR study

We have reported the 25Mg triple-quantum magic-angle spinning (3QMAS) NMR spectra of silicate glasses. The two-dimensional spectra suggest that the magnesium ions in MgSiO3, CaMgSi2O6, Ca2MgSi2O7, Mg3Al2Si3O12, and Li2MgSi2O6 glasses are mainly in octahedral environments, although in Na2MgSi2O6, K2MgSi2O6, and K2MgSi5O12 glasses they form tetrahedral species. We discussed the coordination environments of Mg based on the field strength of competing Mg2+, Ca2+, Na+, K+, and Li+ cations, and convincingly demonstrated that there is a correlation between them. These results indicate that the two-dimensional NMR spectroscopy such as MQMAS technique is a very useful method to analyze the local environments of nonframework cations in noncrystalline solids.     

Cerium-based triple-stranded helicates as luminescent chemosensors for the selective sensing of magnesium ions

Cerium-based triple-strand helicates Ce-CL(1) and Ce-CL(2) were achieved via self-assembly from malonohydrazone derived bis-tridentate ligands H(2)CL(1) and H(2)CL(2), respectively. Structure analysis of Ce-CL(1) shows that six oxygen atoms of the β-diketone groups on the ligands form a lantern-like cavity inside the helicate. Thus the helicates exhibit crown ether recognition behaviors and could work as luminescent magnesium chemosensors. The restricted geometry constraints of the internal cavities provide high selectivities of the helical probes towards Mg(2+) ion over other alkaline and alkaline-earth ions such as Li(+), Na(+), K(+), Ca(2+) and Ba(2+).     

The First Principles Study of Li,Al and Ca Doped Zigzag(7,0) Single Walled Carbon Nanotube

We use the ab initio density functional theory to calculate the band structure, density of states, charge transfer, charge density difference, binding energy and vibration frequency. We can see that the conduction band through the Fermi level include SWNT/H_2/Li, SWNT/H_2/Al and SWNT/H_2/Ca, which shows a kind of metallic character. The charge distribution and contour plots of charge difference density of ion/H_2/SWNT show charge transfer between ion and H_2 molecules rather than between H_2 and H_2. Meanwhile, the interaction between Al, Ca and H_2 is weaker than that of Li. We can also prove that the ion is the primary reason to the increase of adsorption energy of hydrogen molecule in SWNT. Finally, we calculate the vibration frequency and don't find any imaginary frequency, which proves that the(7,0) SWNT is more stable.     

Aqueous divalent metal-nitrate interactions: hydration versus ion pairing

Nitrate aqueous solutions, Mg(NO(3))(2), Ca(NO(3))(2), Sr(NO(3))(2), and Pb(NO(3))(2), are investigated using Raman spectroscopy and free energy profiles from molecular dynamics (MD) simulations. Analysis of the in-plane deformation, symmetric stretch, and asymmetric stretch vibrational modes of the nitrate ions reveal perturbation caused by the metal cations and hydrating water molecules. Results show that Pb(2+) has a strong tendency to form contact ion pairs with nitrate relative to Sr(2+), Ca(2+), and Mg(2+), and contact ion pair formation decreases with decreasing cation size and increasing cation charge density: Pb(2+) > Sr(2+) > Ca(2+) > Mg(2+). In the case of Mg(2+), the Mg(2+)-OH(2) intermolecular modes indicate strong hydration by water molecules and no contact ion pairing with nitrate. Free energy profiles provide evidence for the experimentally observed trend and clarification between solvent-separated, solvent-shared, and contact ion pairs, particularly for Mg(2+) relative to other cations.     

β-D-核糖（ RI）与一价、二价金属离子相互作用的理论研究

在HF和MP2水平用全电子(AE)和相对论有效芯势(RECP)方法研究了Ⅰa、Ⅰb、Ⅱa和Ⅱb族金属离子与β D 核糖(RI)的相互作用. 结果表明, RECP能可靠地用于重金属离子;二价金属离子(M2＋)比一价金属离子(M＋)更易使β D 核糖(RI)变形;二价金属离子络合物(RI M2＋)比一价金属离子络合物(RI M＋)稳定. 电荷布居分析的结果支持上述结论.     

First-principles study of hydrogen adsorption in metal-doped COF-10

Covalent organic frameworks (COFs), due to their low-density, high-porosity, and high-stability, have promising applications in gas storage. In this study we have explored the potential of COFs doped with Li and Ca metal atoms for storing hydrogen under ambient thermodynamic conditions. Using density functional theory we have performed detailed calculations of the sites Li and Ca atoms occupy in COF-10 and their interaction with hydrogen molecules. The binding energy of Li atom on COF-10 substrate is found to be about 1.0 eV and each Li atom can adsorb up to three H(2) molecules. However, at high concentration, Li atoms cluster and, consequently, their hydrogen storage capacity is reduced due to steric hindrance between H(2) molecules. On the other hand, due to charge transfer from Li to the substrate, O sites provide additional enhancement for hydrogen adsorption. With increasing concentration of doped metal atoms, the COF-10 substrate provides an additional platform for storing hydrogen. Similar conclusions are reached for Ca doped COF-10.     

Sandwich-like compounds based on the all-metal aromatic unit Al(4)2- and the main-group metals M (M=Li, Na, K, Be, Mg, Ca)

Inspired by the pioneering experimental characterisation of the all-metal aromatic unit Al(4)2- in the bimetallic molecules MAl4- (M=Li, Na, Cu) and by the very recent theoretical design of sandwich-type transition-metal complexes [Al4MAl4]q- (q=0-2; M=Ti, V, Cr, Zr, Nb, Mo, Hf, Ta, W), we used density functional theory (DFT) calculations (B3LYP/6-311+G(d) to design a series of novel non-transition-metal sandwich complexes based on the all-metal aromatic unit Al4(2-) and the main-group metals M (M=Li, Na, K, Be, Mg, Ca). The traditional homo-decked sandwich compounds [Al4MAl4]q- (without counterions) and (nM)q+[Al4MAl4]q- (with counterions M) (q=2-3, M=Li, Na, K, Be, Mg, Ca), although some of them are truly energy minima, have a much higher energy than many fused isomers. We thus concluded that it seems unlikely for Al4(2-) to sandwich the main-group metal atoms in the homo-decked sandwich form. Alternatively, we proposed a new type of sandwich complex, namely hetero-decked sandwich compounds [CpMAl4]q-, that are the ground-state structures for each M both with and without counterions. It was shown that with the rigid Cp- partner, the all-metal aromatic unit Al(4)2- might indeed act as a "superatom". These new types of all-metal aromatic unit-based sandwich complexes await future experimental verification.     

碱(土)金属离子与2-(3′-羟基-2′-吡啶基)苯并噁唑阳离子-π复合物及其分子内质子转移过程的理论研究

采用密度泛函B3LYP方法,在6-311++G(d,p)基组水平上对碱(土)金属离子(Li+,Na+,K+,Be2+,Mg2+和Ca2+)与2-(3’-羟基-2’-吡啶基)苯并噁唑(HPyBO)的36种阳离子-π复合物的初始构型进行了几何全优化,并计算了其相互作用能.结果表明,碱(土)金属离子与HPyBO复合物有较强的阳离子-π相互作用,部分复合物甚至达到了化学键的强度.相对能量的变化表明碱(土)金属离子的作用能改变HPyBO分子内质子转移过程的能垒,甚至可以导致优势构型反转.当考虑水的溶剂效应后,各质子转移异构体的相对能量及质子转移的能垒均有一定程度的改变.另外,应用分子中的原子(AIM)方法对复合物分子内氢键的键临界点性质进行了分析.     

Voltammetric study of the ion-exchange binding of non-electroactive metal cations to DNA-modified surfaces

We describe a simple electrochemical protocol for studying the ion-exchange binding of non-electroactive ions, specifically mono- and divalent metal cations of biological relevance (Mg(2+), Ca(2+), and K(+)), to DNA-modified surfaces. After incubation in a dilute solution of multiply charged transition metal complex (5.0 microM [Ru(NH(3))(6)]Cl(3)), gold electrodes modified with thiolate-DNA monolayers respond to the presence of these non-electroactive metal cations by producing significant changes in the cyclic voltammograms (i.e., decrease of the integrated charge and shift of formal potential) of the surface-bound redox complex ([Ru(NH(3))(6)](3+)). The divalent cations (particularly Mg(2+)) can be detected at very low concentrations (<10 microM), while the on-set value for K(+) is substantially higher (50 mM). The equilibrium binding constants for Mg(2+) and Ca(2+) to DNA-modified surfaces were calculated.