The Pharmacology and Therapeutic Utility of Sodium Hydroselenide

Metabolically active gasotransmitters (nitric oxide, carbon monoxide and hydrogen sulfide) are important signalling molecules that show therapeutic utility in oxidative pathologies. The reduced form of selenium, hydrogen selenide (HSe⁻/H₂Se), shares some characteristics with these molecules. The simple selenide salt, sodium hydroselenide (NaHSe) showed significant metabolic activity, dose-dependently decreasing ex vivo O₂ consumption (rat soleus muscle, liver) and transiently inhibiting mitochondrial cytochrome C oxidase (liver, heart). Pharmacological manipulation of selenoprotein expression in HepG2 human hepatocytes revealed that the oxidation status of selenium impacts on protein expression; reduced selenide (NaHSe) increased, whereas (oxidized) sodium selenite decreased the abundance of two ubiquitous selenoproteins. An inhibitor of endogenous sulfide production (DL-propargylglycine; PAG) also reduced selenoprotein expression; this was reversed by exogenous NaHSe, but not sodium hydrosulfide (NaHS). NaHSe also conferred cytoprotection against an oxidative challenge (H₂O₂), and this was associated with an increase in mitochondrial membrane potential. Anesthetized Wistar rats receiving intravenous NaHSe exhibited significant bradycardia, metabolic acidosis and hyperlactataemia. In summary, NaHSe modulates metabolism by inhibition of cytochrome C oxidase. Modification of selenoprotein expression revealed the importance of oxidation status of selenium therapies, with implications for current clinical practice. The utility of NaHSe as a research tool and putative therapeutic is discussed.     

Structural Basis for The Recognition of Deaminated Nucleobases by An Archaeal DNA Polymerase

With increasing temperature, nucleobases in DNA become increasingly damaged by hydrolysis of exocyclic amines. The most prominent damage includes the conversion of cytosine to uracil and adenine to hypoxanthine. These damages are mutagenic and put the integrity of the genome at risk if not repaired appropriately. Several archaea live at elevated temperatures and thus, are exposed to a higher risk of deamination. Earlier studies have shown that DNA polymerases of archaea have the property of sensing deaminated nucleobases in the DNA template and thereby stalling the DNA synthesis during DNA replication providing another layer of DNA damage recognition and repair. However, the structural basis of uracil and hypoxanthine sensing by archaeal B-family DNA polymerases is sparse. Here we report on three new crystal structures of the archaeal B-family DNA polymerase from Thermococcus kodakarensis (KOD) DNA polymerase in complex with primer and template strands that have extended single stranded DNA template 5’-overhangs. These overhangs contain either the canonical nucleobases as well as uracil or hypoxanthine, respectively, and provide unprecedented structural insights into their recognition by archaeal B-family DNA polymerases.     

Synchronous receiver initiated MAC protocol for long-lived sensor networks

In this paper, we discuss the design of a new Medium Access Control (MAC) protocol, SRI-MAC (Synchronous Receiver Initiated MAC), for wireless sensor networks whose goal is to extend the lifetime of the network by avoiding major energy waste causes, such as collisions, overhearing and idle listening.     

A Framework of Deep Optimal Features Selection for Apple Leaf Diseases Recognition

Identifying fruit disease manually is time-consuming, expert-required, and expensive; thus, a computer-based automated system is widely required. Fruit diseases affect not only the quality but also the quantity. As a result, it is possible to detect the disease early on and cure the fruits using computer-based techniques. However, computer-based methods face several challenges, including low contrast, a lack of dataset for training a model, and inappropriate feature extraction for final classification. In this paper, we proposed an automated framework for detecting apple fruit leaf diseases using CNN and a hybrid optimization algorithm. Data augmentation is performed initially to balance the selected apple dataset. After that, two pre-trained deep models are fine-tuning and trained using transfer learning. Then, a fusion technique is proposed named Parallel Correlation Threshold (PCT). The fused feature vector is optimized in the next step using a hybrid optimization algorithm. The selected features are finally classified using machine learning algorithms. Four different experiments have been carried out on the augmented Plant Village dataset and yielded the best accuracy of 99.8%. The accuracy of the proposed framework is also compared to that of several neural nets, and it outperforms them all.     

Angiotensin II stimulates cAMP production and protein tyrosine phosphorylation in mouse spermatozoa

Angiotensin II (AII), found in seminal plasma, has been shown to stimulate capacitation in uncapacitated mammalian spermatozoa. The present study investigated the location of AII receptors on spermatozoa and AII's mechanism of action. AT1 type receptors for AII are present on the acrosomal cap region and along the whole of the flagellum of both mouse and human spermatozoa. Because combinations of low concentrations of AII and either calcitonin or fertilization-promoting peptide (FPP), both known to regulate the adenylyl cyclase (AC)/cAMP signal transduction pathway, elicited a significant response, this study investigated the hypothesis that these peptides act on the same pathway. AII was shown to significantly stimulate cAMP production in both uncapacitated and capacitated mouse spermatozoa and this was associated with increases in protein tyrosine phosphorylation. Using an anti-phosphotyrosine antibody to visualize the location of tyrosine phosphoproteins within individual cells, AII significantly stimulated phosphorylation within 20 min in both the head, especially in the acrosomal cap region, and the flagellum, especially in the principal piece, of uncapacitated mouse spermatozoa; combined AII + FPP was stimulatory within 5 min. In addition, Western blotting revealed that AII stimulation increased phosphorylation in a number of tyrosine phosphoproteins in both uncapacitated and capacitated mouse spermatozoa, with some being altered only in the latter category of cells. These results support the hypothesis that AII stimulates AC/cAMP in mammalian spermatozoa.     

A Novel Energy Efficient and Lifetime Maximization Routing Protocol in Wireless Sensor Networks

The energy consumption is a key design criterion for the routing protocols in wireless sensor networks (WSN). Some of the conventional single path routing schemes may not be optimal to maximize the network lifetime and connectivity. Thus, multipath routing schemes is an optimal alternative to extend the lifetime of WSN. Multipath routing schemes distribute the traffic across multiple paths instead of routing all the traffic along a single path. In this paper, we propose a multipath Energy-Efficient data Routing Protocol for wireless sensor networks (EERP). The latter keeps a set of good paths and chooses one based on the node state and the cost function of this path. In EERP, each node has a number of neighbours through which it can route packets to the base station. A node bases its routing decision on two metrics: state and cost function. It searches its Neighbours Information Table for all its neighbours concerned with minimum cost function. Simulation results show that our EERP protocol minimizes and balances the energy consumption well among all sensor nodes and achieves an obvious improvement on the network lifetime.     

Geochemical characterization of sediments samples of Sembar Formation from three different wells of Southern Indus Basin

Sediment samples from three boreholes namely Paniro-II, North Akri, and Bhadmi of Sembar Formation, Southern Indus Basin were geochemically analyzed. The Soxhlet extracted bitumen were fractionated by column chromatography. The saturate fractions were further analyzed to evaluate type and quality of organic matter (OM). Total organic carbon, determined by a wet combustion titration method, indicates fair-to-good source rock potential. The plot of isoprenoids/n-Alkanes shows a mixed source of OM. Pristane/Phytane values and distribution of hydrocarbons showed dysoxic depositional environment. Carbon preference indices suggested increase in maturity with depth.     

Antioxidant/prooxidant properties of model phenolic compounds: Part I. Studies on equimolar mixtures by chemiluminescence and cyclic voltammetry

The electrochemical behaviour and the antioxidant effectiveness of ascorbic acid (AA), caffeic acid (CA), quercetin (Q), catechin (Cat), hesperetin (H) and their equimolar binary mixtures were evaluated by means of cyclic voltammetry and luminol Co(II)–EDTA chemiluminescence, respectively, with a view to the prediction of a potential prooxidant or synergistic behaviour of mixtures of antioxidants. An important synergistic oxidation between Q and Cat was observed. The mixture CA/AA manifested the most prooxidant tendency among all the tested compounds and their mixtures. AA increased the antioxidant activity of Q and decreased that of Cat. Q and Cat regenerated CA, the prooxidant effect of the mixtures increasing with less e-delocalisation. Cat and CA have an antagonistic effect. H has the closest oxidation potential to CA and a slight increase of its antioxidant activity was registered when mixed with CA, which was not the case when it was combined with the other compounds or measured alone.     

Survey on Wireless Sensor Network Applications and Energy Efficient Routing Protocols

Wireless sensor network (WSN) is a group of small power-constrained nodes that sense data and communicate it to the base station (BS). These nodes cover a vast region of interest (ROI) for several purposes according to the application need. The first challenge encountered in WSNs is how to cover the ROI perfectly and send the monitored data to the BS. Although the energy introduced during setup phase and the violation of energy fairness constraint of dynamic routing topologies, they achieve high network performance in terms of coverage and connectivity. In this paper, we categorize the applications of WSN based on different aspects to show the major protocol design issues. Thus, the energy efficiency of the recent proactive routing protocols is studied from different angles. The energy overhead and energy fairness of each protocol were carefully analyzed. The most energy efficient routing protocols for homogeneous proactive networks were studied and compared to highlight the research challenges and existing problems in this area. The results proved that energy overhead and route selection are the most effective aspects of network lifetime and network efficiency.