Reconstructing gene regulatory networks with a memetic-neural hybrid based on fuzzy cognitive maps

Reconstructing gene regulatory networks (GRNs) plays an important role in identifying the complicated regulatory relationships, uncovering regulatory patterns in cells, and gaining a systematic view for biological processes. In order to reconstruct large-scale GRNs accurately, in this paper, we first use fuzzy cognitive maps (FCMs), which are a kind of cognition fuzzy influence graphs based on fuzzy logic and neural networks, to model GRNs. Then, a novel hybrid method is proposed to reconstruct GRNs from time series expression profiles using memetic algorithm (MA) combined with neural network (NN), which is labeled as MANN_FCM-GRN. In MANN_FCM-GRN, the MA is used to determine regulatory connections in GRNs and the NN is used to determine the interaction strength of the regulatory connections. In the experiments, the performance of MANN_FCM-GRN is validated on both synthetic data and the benchmark dataset DREAM3 and DREAM4. The experimental results demonstrate the efficacy of MANN_FCM-GRN and show that MANN_FCM-GRN can reconstruct GRNs with high accuracy without expert knowledge. The comparison with existing algorithms also shows that MANN_FCM-GRN outperforms ant colony optimization, non-linear Hebbian learning, and real-coded genetic algorithms.

     

烟道流量计量标准装置

为了解决我国烟道流量计的量值溯源问题,中国计量科学研究院建立了烟道流量计量标准装置。装置使用可溯源至标准转盘的激光多普勒测速仪作为原级标准器,采用激光多普勒流速剖面扫描和超声流量计波动修正的方式测量标准流量,经校准的8声道超声流量计为工作级标准表,具备了908~104840m3/h的测量能力,扩展不确定度为0.62%(k=2),可对最大口径为1m的流量计进行校准。装置下游测试段包括圆形管段和矩形管段,能够开展烟道流量计测量性能的研究。     

Visual Detection of Adenosine Triphosphate by Taylor Rising: A Simple Point-of-Care Testing Method Based on Rolling Circle Amplification

Rapid and sensitive point-of-care testing (POCT) is an extremely critical mission in practical applications, especially for rigorous military medicine, home health care, and in the third world. Here, we report a visual POCT method for adenosine triphosphate (ATP) detection based on Taylor rising in the corner of quadratic geometries between two rod surfaces. We discuss the principle of Taylor rising, demonstrating that it is significantly influenced by contact angle, surface tension, and density of the sample, which are controlled by ATP-dependent rolling circle amplification (RCA). In the presence of ATP, RCA reaction effectively suppresses Taylor-rising behavior, due to the increased contact angle, density, and decreased surface tension. Without addition of ATP, untriggered RCA reaction is favorable for Taylor rising, resulting in a significant height. With this proposed method, visual sensitive detection of ATP without the aid of other instruments is realized with only a 5 μL droplet, which has good selectivity and a low detection limit (17 nM). Importantly, this visual method provides a promising POCT tool for user-friendly molecular diagnostics.     

Effect of Nanoparticles on Viscosity and Interfacial Tension of Aqueous Surfactant Solutions at High Salinity and High Temperature

Surfactant flooding has widely been used as one of the chemically enhanced oil recovery (EOR) techniques. Surfactants majorly influence the interfacial tension, γ, between oil and brine phase and control capillary number and relative permeability behavior and, thus, influence ultimate recovery. Additives, such as nanoparticles, are known to affect surfactant properties and are regarded as promising EOR agents. However, their detailed interactions with surfactants are not well understood. Thus, in this work, we examined the influence of silica nanoparticles on the ability of surfactants to lower γ and to increase viscosity at various temperatures and salinities. Results show that the presence of nanoparticles decreased γ between n-decane and various surfactant formulations by up to 20%. It was found that γ of nanoparticles–surfactant solutions passed through a minimum at 35 °C when salt was added. Furthermore, the viscosity of cationic surfactant solutions increased at specific salt (1.5 wt.%) and nanoparticle (0.05 wt.%) concentrations. Results illustrate that selected nanoparticles–surfactant formulations appear very promising for EOR as they can lower brine/n-decane interfacial tension and act as viscosity modifiers of the injected fluids.     

基于液压活塞式惯容器的车辆悬架性能研究

阐述了液压活塞式惯容器的基本结构、工作原理与承载力大的特点，建立了考虑摩擦力、寄生阻尼力和油液弹性效应的惯容器非线性力学模型。在数控液压伺服激振台上对液压活塞式惯容器进行了力学性能试验，基于试验结果，利用Matlab参数辨识工具箱对非线性力学模型中的参数进行辨识。在此基础上建立了包含液压活塞式惯容器非线性因素的车辆惯容器 弹簧 阻尼器（inerter-spring-damper，简称ISD）悬架动力学模型并进行了仿真分析。结果表明，当考虑液压活塞式惯容器非线性因素时，车辆ISD悬架系统的车身加速度均方根值增加5%，而轮胎动载荷与悬架动行程均方根值均有所减小,降低了车辆的行驶平顺性。     

基于最小维修的石化安全设备区间截尾寿命数据分析

在石化安全关键设备寿命截尾数据的可靠性评估过程中，为避免传统可靠性评估方法未考虑维修对故障间隔时间的影响，以及中值填充法误差较大的缺点，本文提出了一种逆变换区间截尾数据填充方法。首先，在可修系统基于最小维修的假设下，通过非齐次泊松过程描述系统的故障趋势，利用逆变换填充得到监测区间的缺失数据；随后根据蒙特卡罗期望最大化算法，获得填充数据的参数估计值。通过蜡油加氢装置紧急泄压阀的案例分析，该算法能够很好地融合已有数据，得到的形状参数估计值偏差与中值填充法相比缩小4%以上，从而验证了该算法的有效性；这有助于安全关键设备的定量化完整性管理，保障石化装置平稳运行。     

新型高相对分子质量阳离子聚丙烯酰胺的合成

研究了采用复合引发体系,以丙烯酰胺为单体,丙烯酰氧乙基三甲基氯化铵(DAC)为阳离子功能单体,共聚合制备高相对分子质量的阳离子聚丙烯酰胺的方法。考察了单体含量、阳离子单体类型、聚合体系pH、助溶剂用量、复合引发体系中氧化剂、还原剂和偶氮化合物配比及用量、烘干温度对共聚物产品性能的影响。结果表明,在单体含量30％、DAC为阳离子单体、聚合体系pH 3．0、助溶剂用量占单体用量4％-5％、复合引发体系氧化剂、还原剂和偶氮化合物体积配比为1:1:1,烘干温度90℃以下条件下,可合成相对分子质量为(1000-1200)×104、阳离子度为 30％的阳离子聚丙烯酰胺产品。