A probabilistic simulator for population dynamics of quasispecies

We constructed a probabilistic simulator that allows all the events in population dynamics such as death, birth, mutation, and suppression/stimulation to be described by probabilistic rules. The simulator also facilitates a lattice used for expressing distribution and diversity (number of distinct strains) of quasispecies. The simulator is used to investigate the diversity threshold in HIV and T-cell interaction. This work was presented in part at the 13th International Symposium on Artificial Life and Robotics, Oita, Japan, January 31–February 2, 2008     

Effects of support and additive on oxidation state and activity of Pt catalyst in propane combustion

The effects of support and additive on the oxidation state and catalytic activity of Pt catalyst in the low temperature propane combustion were systematically investigated on Pt/MgO, Pt/Al₂O₃ and Pt/SiO₂–Al₂O₃. The catalytic activity varied much with both support materials and additives. The catalyst on the more acidic support showed higher activity, and the catalytic activity on every support materials increased as the electronegativity of additives increased, while some additives decreased the activity. The oxidation state of platinum, estimated by white line intensity of Pt L_III-edge XANES spectrum, also varied with the support and additives, and additives with higher electronegativity greatly prevented the platinum from its oxidation under oxidising atmosphere. Among almost all the catalysts with various supports and various additives, a clear relationship was observed between the oxidation state of platinum and the catalytic activity; the more metallic platinum showed higher activity. Thus, it was concluded that the total electrophilic/electrophobic property derived from those of the support and additive controls the oxidation state of platinum, which intensively affects the catalytic activity; i.e. higher electrophilic property provides less oxidised platinum, resulting in high catalytic activity. The mechanism of this effect was also discussed on the basis of thermochemical data, and it was proposed that the electrophobic materials promote the noble metal oxidation since the noble metal oxo-anion such as PtO^δ− is more stabilised with electrophobic cation.     

Alumina-, niobia-, and niobia/alumina-supported NiMoS catalysts: Surface properties and activities in the hydrodesulfurization of thiophene and hydrodenitrogenation of 2,6-dimethylaniline

The activity of NiMoS catalysts supported on niobia, alumina, and niobia/alumina was compared for the thiophene hydrodesulfurization (HDS) and 2,6-dimethylaniline (2,6-DMA) hydrodenitrogenation (HDN) reactions. To evaluate the acidity of the supports and identify the nature of the sulfide sites, adsorption of 2,6-dimethylpyridine, pyridine, and CO was performed and followed by IR spectroscopy. This study has shown that with niobia as a support, the activity of NiMoS catalysts in thiophene HDS and in HDN of 2,6-DMA was no longer promoted by the synergy between Ni and Mo. The absence of synergy between molybdenum and nickel on niobia can be explained by the strong interaction of each metal with niobia at the expense of interaction with each other. Moreover, it has been shown that on a niobia/alumina support, the formation of the NiMoS phase can be directly linked to the presence of alumina not covered by niobia. However, niobia is an interesting support for the HDN of 2,6-DMA, because it favors the formation of xylene through direct ammonia elimination involving low H₂ consumption. The activity for xylene formation on niobia is linked to the electron-deficient nature of the Mo sulfide site, as demonstrated by CO adsorption followed by IR.     

Antibody-based computing: an application to the stable marriage problem

Antibodies, among other things, are important components of the immune system. This paper proposes using the specific recognition capability exhibited by antibodies for computation, in particular, for solving the stable marriage problem, which has been studied as a combinatorial computational problem. Antibody-based computation is proposed by integrating the recognition capabilities of antibodies. The computation is carried out on an array form that is suitable not only for expressing stable marriage problems, but also for further integration to antibody microarrays. This work was presented in part at the 12th International Symposium on Artificial Life and Robotics, Oita, Japan, January 25–27, 2007     

Time-dependent thermal convection in dilute solutions of 3He in superfluid 4He

Time-dependent thermal convection can occur in a unity-aspect-ratio Rayleigh-Beard convection cell containing a dilute solution of ³He in superfluid ⁴He when the fluid is heated from above. Results are presented primarily for a 0.24 mole % He solution at 0.925 K. Means is provided for introducing heat at the top and separately for a central plug and an outer ring such that both are at a constant temperature gDT above the bottom. A critical temperature difference T _cfor convection can be defined above which both steady and time-dependent convection occur. The time-dependent effects include a region of T. near T _cand characterized only by excessive noise, a region of somewhat higher T where there are intermittent major changes in the plug heating rate with a time distribution like that for random events, and a region at still higher T where periodic but nonsinusoidal variation of the heat flow is observed. When a long enough time, several months, has elapsed after cooling down the apparatus, time-dependent states no longer occur, and the heat flow above T _cis limited to steady convection. Briefly raising the temperature of the apparatus to 77 K is sufficient to restore the possibility of time-dependent states.     

Micro Textures in Concentrated-Conformal-Contact Lubrication: Effect of Distribution Patterns

Micro-scale textures may be engineered into surfaces for lubrication performance improvement. It is expected that a carefully chosen texture helps retain lubricant and enhances the hydrodynamic effect at the interface. The concept of model-based virtual texturing enables textured surfaces to be generated and “tested” through numerical simulations. This paper reports virtual texturing and simulation of a group of textured surfaces in a lubricated concentrated contact. The focus of the study is on the selection of texture distribution patterns based on their lubrication performance. Patterns of fishbone, sinusoidal, triangular, and honeycomb distributions have been investigated. The effects of texture direction, orientation angle, feature continuity, and aspect ratio are also studied. The results indicate that, for the given material and geometry system under the given conditions in the present work, the textures generating the strongest hydrodynamic lifting are short grooves with a small aspect ratio and sinusoidal waves of a small wavelength/amplitude ratio propagating in the motion direction.     

Improved electrochemical activity of LiMnPO4 by high-energy ball-milling

Olivine lithium manganese phosphate (LiMnPO₄) becomes research focus because of its high energy density and improved thermal stability. However, its application in lithium ion batteries suffers severely from poor electrochemical activity due to low conductivity and structural instability upon the charge and discharge process. By applying a high-energy ball-milling method we succeed in improving the capacity delivery and rate capability. LiMnPO₄ materials ball-milled without or with acetylene black are able to deliver a high capacity of 135 and 127 mAh g⁻¹, respectively, more than 50% greater than the pristine one. Particularly, the latter also shows an improved discharge plateau and stable cyclability. High-energy synchrotron radiation X-ray diffraction (XRD), scanning electron microscopy (SEM), Raman spectroscopy, laser particle analysis, and galvanostatic charge and discharge are employed to understand the effect of ball-milling on the LiMnPO₄ material.     

Polyvinyl alcohol associated with carbon nanotube scaffolds for osteogenic differentiation of rat bone mesenchymal stem cells

Polyvinyl alcohol (PVAl) hydrogel, alone and reinforced with two types of carbon nanoparticles, was studied in cultured cells to assess its potential use in treating osteochondral defects. The carbon nanoparticles were produced by hot-filament chemical vapour deposition. The carbon material was characterised with a Renishaw Invia Raman microscope system and the morphological particles were characterised with field emission scanning electron microscopy and high-resolution transmission electron microscopy. Cytotoxicity was evaluated by measuring the Vero fibroblast-type cells’ metabolic activity and studying their morphology. The osteogenic differentiation of mesenchymal stem cells obtained from rat bone marrow was evaluated by alkaline phosphatase (ALP) and alizarin red S (ARS) staining. Cell viability and morphology were assessed with thiazolyl blue tetrazolium bromide and scanning electron microscopy, respectively. The materials did not interfere with the viability, metabolic activity, morphology and spreading of either of the cell types analysed. Nodules of mineralised organic matrix were identified with ARS and ALP, confirming osteogenic differentiation. These results indicated higher concentration of ALP and mineralised matrix for PVAl with carbon nanoparticles. The results of this study indicate the potential use of carbon nanoparticles with PVAl hydrogels as orthopaedic biomaterials to treat osteochondral defects, but further in vivo investigations are still necessary.