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21.
Giorgio Giardina Serena Rinaldo Nicoletta Castiglione Manuela Caruso Francesca Cutruzzolà 《Proteins》2009,77(1):174-180
The opportunistic pathogen Pseudomonas aeruginosa can grow in low oxygen, because it is capable of anaerobic respiration using nitrate as a terminal electron acceptor (denitrification). An intermediate of the denitrification pathway is nitric oxide, a compound that may become cytotoxic at high concentration. The intracellular levels of nitric oxide are tightly controlled by regulating the expression of the enzymes responsible for its synthesis and degradation (nitrite and nitric oxide reductases). In this article, we present the crystallographic structure of the wild‐type dissimilative nitrate respiration regulator (DNR), a master regulator controlling expression of the denitrification machinery and a putative target for new therapeutic strategies. Comparison with other structures among the CRP‐FNR class of regulators reveals that DNR has crystallized in a conformation that has never been observed before. In particular, the sensing domain of DNR has undergone a rotation of more than 50° with respect to the other structures. This suggests that DNR may undergo an unexpected and very large conformational rearrangement on activation. Proteins 2009. © 2009 Wiley‐Liss, Inc. 相似文献
22.
Vladimir Baytshtok Huijie Lu Hongkeun Park Sungpyo Kim Ran Yu Kartik Chandran 《Biotechnology and bioengineering》2009,102(6):1527-1536
The goal of this study was to identify bacterial populations that assimilated methanol in a denitrifying sequencing batch reactor (SBR), using stable isotope probing (SIP) of 13C labeled DNA and quantitatively track changes in these populations upon changing the electron donor from methanol to ethanol in the SBR feed. Based on SIP derived 13C 16S rRNA gene clone libraries, dominant SBR methylotrophic bacteria were related to Methyloversatilis spp. and Hyphomicrobium spp. These methylotrophic populations were quantified via newly developed real‐time PCR assays. Upon switching the electron donor from methanol to ethanol, Hyphomicrobium spp. concentrations decreased significantly in accordance with their obligately methylotrophic nutritional mode. In contrast, Methyloversatilis spp. concentrations were relatively unchanged, in accordance with their ability to assimilate both methanol and ethanol. Direct assimilation of ethanol by Methyloversatilis spp. but not Hyphomicrobium spp. was also confirmed via SIP. The reduction in methylotrophic bacterial concentration upon switching to ethanol was paralleled by a significant decrease in the methanol supported denitrification biokinetics of the SBR on nitrate. In sum, the results of this study demonstrate that the metabolic capabilities (methanol assimilation and metabolism) and substrate specificity (obligately or facultatively methylotrophic) of two distinct methylotrophic bacterial populations contributed to their survival or washout in denitrifying bioreactors. Biotechnol. Bioeng. 2009;102: 1527–1536. © 2008 Wiley Periodicals, Inc. 相似文献
23.
Treatment of Biogas Produced in Anaerobic Reactors for Domestic Wastewater: Odor Control and Energy/Resource Recovery 总被引:1,自引:0,他引:1
Adalberto Noyola Juan Manuel Morgan-Sagastume Jorge E. López-Hernández 《Reviews in Environmental Science and Biotechnology》2006,5(1):93-114
Anaerobic municipal wastewater treatment in developing countries has important potential applications considering their huge
lack of sanitation infrastructure and their advantageous climatic conditions. At present, among the obstacles that this technology
encounters, odor control and biogas utilization or disposal should be properly addressed. In fact, in most of small and medium
size anaerobic municipal treatment plants, biogas is just vented, transferring pollution from water to the atmosphere, contributing
to the greenhouse gas inventory. Anaerobic municipal sewage treatment should not be considered as an energy producer, unless
a significant wastewater flow is treated. In these cases, more than half of the methane produced is dissolved and lost in
the effluent so yield values will be between 0.08 and 0.18 N m3 CH4/kg COD removed. Diverse technologies for odor control and biogas cleaning are currently available. High pollutant concentrations
may be treated with physical-chemical methods, while biological processes are used mainly for odor control to prevent negative
impacts on the treatment facilities or nearby areas. In general terms, biogas treatment is accomplished by physico-chemical
methods, scrubbing being extensively used for H2S and CO2 removal. However, dilution (venting) has been an extensive disposal method in some small- and medium-size anaerobic plants
treating municipal wastewaters. Simple technologies, such as biofilters, should be developed in order to avoid this practice,
matching with the simplicity of anaerobic wastewater treatment processes. In any case, design and specification of biogas
handling system should consider safety standards. Resource recovery can be added to anaerobic sewage treatment if methane
is used as electron donor for denitrification and nitrogen control purposes. This would result in a reduction of operational
cost and in an additional advantage for the application of anaerobic sewage treatment. In developing countries, biogas conversion
to energy may apply for the clean development mechanism (CDM) of the Kyoto Protocol. This would increase the economic feasibility
of the project through the marketing of certified emission reductions (CERs). 相似文献
24.
25.
Polyethylene glycol (PEG) mediated transfection of Lactobacillus casei ATCC 27092 protoplasts by phage PL-1 DNA was done. The protoplasts were obtained by treatment with purified PL-1 phage N-acetylmuramidase in the presence of citrate. Optimum conditions for transfection were 50% PEG 4,000, 15 µg protamine sulfate/ml, 0.15 m sucrose, and 10 m m MgSO4 in MR medium (pH 6.0). The extent of transfection was proportional to the amounts of DNA added, and the greatest efficiency of transfection after a 10-min incubation was about 3.3 × 105 PFU/µg DNA. The eclipse period of growth of progeny phages in the transfectants was 3 hr and the average burst size was 200. 相似文献
26.
Isao Shibuya Hiroko Honda Bunji Maruo 《Bioscience, biotechnology, and biochemistry》2013,77(1):111-114
An NAD linked formate dehydrogenating enzyme which catalyzed the last step of methanol oxidation system was extracted from the methanol-grown Kloeckera sp. No. 2201. The specific activity of the enzyme in the extract of methanol-grown cells was found to be considerably higher than that of the glucose-grown cells. The enzyme was purified about 35-fold from the extract of methanol-grown cells by heat treatment, column chromatographies on DEAE-cellulose and on hydroxylapatite, and Sephadex G-200 gel filtration. The purified enzyme was shown to be homogeneous by analyses with electrophoresis and ultracentrifuga-tion. The purified enzyme was a kind of NAD: formate oxidoreductase (EC, 1.2.1.2) which catalyzed specifically the oxidation of formate to carbon dioxide. The Km values were 22 mm for formate and 0.1 mm for NAD. The enzyme was inactivated by potassium cyanide, sodium azide, and p-chloromercuribenzoate but not by any metal-chelating reagents tested. Other general properties of the enzyme were also investigated. 相似文献
27.
Takao Murata 《Bioscience, biotechnology, and biochemistry》2013,77(10):1995-2002
ADP-glucose phosphorylase [adenosine diphosphate glucose: orthophosphate adenyl- yltransferase; Dankert et ah, Biochim. Biophys. Acta, 81, 78 (1964)] was found to be widely distributed in plant tissues. The enzyme was purified 570-fold in a 24% yield from cell- free extract of growing tubers of potato (Solanum tuberosum L.). The following reaction catalyzed by the purified enzyme was found to proceed stoichiometrically. ADP-glucose +P1→ADP+glucose-1-PMaximal activity was observed at pH 8. The enzyme was the most stable at pH 7, showing 50% loss of its original activity after 50 min heating at 57°C. The following kinetic parameters were obtained: activation energy, 11.1 kcal/mole; Km (P1), 2.5 mm; Km (ADP-glucose), 0.05 mm. The enzyme did not act on GDP-mannose, GDP-glucose and UDP-glucose. Neither activator nor inhibitor was found among various phosphorylated metabolites tested. The enzyme was inhibited by metal-binding reagents, EDTA and o-phenanthroline. None of the metal ions tested was found to recover the activity of chelator-treated enzyme. 相似文献
28.
David Fowler Mhairi Coyle Ute Skiba Mark A. Sutton J. Neil Cape Stefan Reis Lucy J. Sheppard Alan Jenkins Bruna Grizzetti James N. Galloway Peter Vitousek Allison Leach Alexander F. Bouwman Klaus Butterbach-Bahl Frank Dentener David Stevenson Marcus Amann Maren Voss 《Philosophical transactions of the Royal Society of London. Series B, Biological sciences》2013,368(1621)
Global nitrogen fixation contributes 413 Tg of reactive nitrogen (Nr) to terrestrial and marine ecosystems annually of which anthropogenic activities are responsible for half, 210 Tg N. The majority of the transformations of anthropogenic Nr are on land (240 Tg N yr−1) within soils and vegetation where reduced Nr contributes most of the input through the use of fertilizer nitrogen in agriculture. Leakages from the use of fertilizer Nr contribute to nitrate (NO3−) in drainage waters from agricultural land and emissions of trace Nr compounds to the atmosphere. Emissions, mainly of ammonia (NH3) from land together with combustion related emissions of nitrogen oxides (NOx), contribute 100 Tg N yr−1 to the atmosphere, which are transported between countries and processed within the atmosphere, generating secondary pollutants, including ozone and other photochemical oxidants and aerosols, especially ammonium nitrate (NH4NO3) and ammonium sulfate (NH4)2SO4. Leaching and riverine transport of NO3 contribute 40–70 Tg N yr−1 to coastal waters and the open ocean, which together with the 30 Tg input to oceans from atmospheric deposition combine with marine biological nitrogen fixation (140 Tg N yr−1) to double the ocean processing of Nr. Some of the marine Nr is buried in sediments, the remainder being denitrified back to the atmosphere as N2 or N2O. The marine processing is of a similar magnitude to that in terrestrial soils and vegetation, but has a larger fraction of natural origin. The lifetime of Nr in the atmosphere, with the exception of N2O, is only a few weeks, while in terrestrial ecosystems, with the exception of peatlands (where it can be 102–103 years), the lifetime is a few decades. In the ocean, the lifetime of Nr is less well known but seems to be longer than in terrestrial ecosystems and may represent an important long-term source of N2O that will respond very slowly to control measures on the sources of Nr from which it is produced. 相似文献
29.
Fajardo Carmen Mosquera-Corral Anuska Campos José Luis Méndez Ramón 《Process Biochemistry》2013,48(9):1368-1374
In this research study a nitrifying/autotrophic denitrifying system was used for the post-treatment of an effluent coming from an anaerobic digester treating the wastewater produced in a fish canning industry. The nitrifying reactor achieved 100% of ammonia oxidation into nitrate. The effluent from this unit was fed to the autotrophic denitrifying reactor which treated a maximum sulphide loading rate (SLR) of 200 mg S2?/L d with removal percentages of 100% and 30% for sulphide and nitrate, respectively. The low nitrate removal efficiency is attributed to sulphide limitations.The operational costs of this system were estimated as 0.92 €/kg Nremoved, lower than those for conventional nitrification/denitrification processes. For nitrogen removal the SHARON/anammox processes is the cheapest option. However the combination of nitrification and autotrophic denitrification (using elemental sulphur) processes would present a better operational stability compared to the SHARON/anammox system. 相似文献
30.
Rhamnolipids are high‐value effective biosurfactants produced by Pseudomonas aeruginosa. Large‐scale production of rhamnolipids is still challenging especially under free‐cell aerobic conditions in which the highly foaming nature of the culture broth reduces the productivity of the process. Immobilized systems relying on oxygen as electron acceptor have been previously investigated but oxygen transfer limitation presents difficulties for continuous rhamnolipid production. A coupled system using immobilized cells and nitrate instead of oxygen as electron acceptor taking advantage of the ability of P. aeruginosa to perform nitrate respiration was evaluated. This denitrification‐based immobilized approach based on a hollow‐fiber setup eliminated the transfer limitation problems and was found suitable for continuous rhamnolipid production in a period longer than 1,500 h. It completely eliminated the foaming difficulties related to aerobic systems with a comparable specific productivity of 0.017 g/(g dry cells)‐h and allowed easy recovery of rhamnolipids from the cell‐free medium. © 2013 American Institute of Chemical Engineers Biotechnol. Prog., 29: 346–351, 2013 相似文献