Applications of Thermal Analysis and Coupled Techniques in Pharmaceutical Industry

Thermal analysis methods are well-established techniques in research laboratories of pharmaceutical industry. The robustness and sensitivity of instrumentation, the introduction of automation and of reliable software according to the industrial needs widened considerably the areas of applications in the last decade. Calibration of instruments and validation of results follow the state of the art of cGMP as for other analytical techniques. Thermal analysis techniques are especially useful for the study of the behavior of the poly-phasic systems drug substances and excipients and find a unique place for new delivery systems. Since change of temperature and moisture occur by processing and storage, changes of the solid state may have a considerable effect on activity, toxicity and stability of compounds. Current requirements of the International Conference of Harmonisation for the characterization and the quantitation of polymorphism in new entities re-enforce the position of thermal analysis techniques. This challenging task needs the use of complementary methods. Combined techniques and microcalorimetry demonstrate their advantages. This article reviews the current use of thermal analysis and combined techniques in research and development and in production. The advantage of commercially coupled techniques to thermogravimetry is emphasized with some examples. This revised version was published online in August 2006 with corrections to the Cover Date.     

Acid-Catalyzed RNA-Oligomerization from 3’,5’-cGMP

The assembly of ancient informational polymers from nucleotide precursors is the central challenge of life's origin on our planet. Among the possible solutions, dry polymerization of 3’,5’-cyclic guanosine monophosphate (3’,5’-cGMP) has been proposed as a candidate to create oligonucleotides of 15–20 units in length. However, the reported sensitivity of the reaction to the presence of cations raised questions of whether this chemistry could be relevant in a geological context. The experiments in this study show that the presence of cations is not restrictive as long as the reaction is conducted in an acidic environment, in contrast to previous reports that suggested optimal conditions at pH 9.     

Purine 3′:5′‐cyclic nucleotides with the nucleobase in a syn orientation: cAMP,cGMP and cIMP

Purine 3′:5′‐cyclic nucleotides are very well known for their role as the secondary messengers in hormone action and cellular signal transduction. Nonetheless, their solid‐state conformational details still require investigation. Five crystals containing purine 3′:5′‐cyclic nucleotides have been obtained and structurally characterized, namely adenosine 3′:5′‐cyclic phosphate dihydrate, C₁₀H₁₂N₅O₆P·2H₂O or cAMP·2H₂O, (I), adenosine 3′:5′‐cyclic phosphate 0.3‐hydrate, C₁₀H₁₂N₅O₆P·0.3H₂O or cAMP·0.3H₂O, (II), guanosine 3′:5′‐cyclic phosphate pentahydrate, C₁₀H₁₂N₅O₇P·5H₂O or cGMP·5H₂O, (III), sodium guanosine 3′:5′‐cyclic phosphate tetrahydrate, Na⁺·C₁₀H₁₁N₅O₇P⁻·4H₂O or Na(cGMP)·4H₂O, (IV), and sodium inosine 3′:5′‐cyclic phosphate tetrahydrate, Na⁺·C₁₀H₁₀N₄O₇P⁻·4H₂O or Na(cIMP)·4H₂O, (V). Most of the cyclic nucleotide zwitterions/anions [two from four cAMP present in total in (I) and (II), cGMP in (III), cGMP⁻ in (IV) and cIMP⁻ in (V)] are syn conformers about the N‐glycosidic bond, and this nucleobase arrangement is accompanied by C_rib—H…N_pur hydrogen bonds (rib = ribose and pur = purine). The base orientation is tuned by the ribose pucker. An analysis of data obtained from the Cambridge Structural Database made in the context of syn–anti conformational preferences has revealed that among the syn conformers of various purine nucleotides, cyclic nucleotides and dinucleotides predominate significantly. The interactions stabilizing the syn conformation have been indicated. The inter‐nucleotide contacts in (I)–(V) have been systematized in terms of the chemical groups involved. All five structures display three‐dimensional hydrogen‐bonded networks.     

Endless: A Purine‐Binding RNA Motif that Can Be Expressed in Cells

It is becoming increasingly clear that nature uses RNAs extensively for regulating vital functions of the cell, and short sequences are frequently used to suppress gene expression. However, controlling the concentration of small molecules intracellularly through designed RNA sequences that fold into ligand‐binding structures is difficult. The development of “endless”, a triplex‐based folding motif that can be expressed in mammalian cells and binds the second messenger 3′,5′‐cyclic guanosine monophosphate (cGMP), is described. In vitro, DNA or RNA versions of endless show low micromolar to nanomolar dissociation constants for cGMP. To test its functionality in vivo, four endless RNA motifs arranged in tandem were co‐expressed with a fluorescent cGMP sensor protein in murine vascular smooth muscle cells. Nitric oxide induced endogenous cGMP signals were suppressed in endless‐expressing cells compared to cells expressing a control motif, which suggests that endless can act as a genetically encoded cGMP sink to modulate signal transduction in cells.     

Src Mediates Epigallocatechin-3-O-Gallate-Elicited Acid Sphingomyelinase Activation

Epigallocatechin-3-O-gallate (EGCG) is one of the major bioactive compounds known to be present in green tea. We previously reported that EGCG shows selective toxicity through activation of the protein kinase B (Akt)/cyclic guanosine monophosphate (cGMP)/acid sphingomyelinase (ASM) axis via targeting its receptor 67-kDa laminin receptor (67LR), which is overexpressed in cancer. However, little is known about upstream mechanisms of EGCG-elicited ASM activation. In this study we show that the proto-oncogene tyrosine-protein kinase Src, also known as c-src, plays a crucial role in the anticancer effect of EGCG. We showed that EGCG elicits phosphorylation of Src at Tyr 416, a crucial phosphorylation site for its activity, and that the pharmacological inhibition of Src impedes the upstream events in EGCG-induced cell death signaling including upregulation of Akt activity, increase in cGMP levels, and activation of ASM. Moreover, focal adhesion kinase (FAK), which is involved in the phosphorylation of Src, is colocalized with 67LR. EGCG treatment enhanced interaction of FAK and 67LR. Consistent with these findings, pharmacological inhibition of FAK significantly neutralized EGCG-induced upregulation of Akt activity and activation of ASM. Taken together, FAK/Src play crucial roles in the upstream signaling of EGCG.     

紫草多糖对hCG诱导大鼠黄体细胞分泌功能的影响

采用体外黄体细胞培养,观察中药紫草的水溶成分——紫草多糖对hCG诱导的黄体细胞分泌孕酮影响,并探讨其可能机制。选取未成年雌性SD大鼠,分离黄体细胞,分为基础组和hCG组,分别添加不同浓度紫草多糖,放射免疫检测各组细胞内和培养液中的孕酮(Progesterone,P4)含量;将细胞悬液分为4组:空白对照组、1.50g.L-1紫草多糖组、2×104 U/L hCG组以及hCG(2×104 U/L)+紫草多糖(1.50g.L-1)组,在培养的不同时间点(0、0.5、1、2h时),分别测P4产量,观察紫草多糖对培养黄体细胞作用的起效时间和动力学变化。此外,上述4组培养0.5h后离心分离细胞和培养液,分别测得细胞内和培养液中的cAMP和cGMP含量,将细胞内和培养液中的含量之和作为总量,并计算其cAMP/cGMP比值。结果表明:1.紫草多糖呈剂量依赖性地抑制hCG刺激下黄体细胞P4的生成。2.加大剂量(>3.00g.L-1)紫草多糖亦可抑制基础P4的生成。3.1.50g.L-1紫草多糖组从作用0.5h起,即显著抑制黄体细胞hCG刺激下的P4生成(P<0.01)。4.hCG可明显增加黄体细胞cAMP含量,导致cAMP/cGMP增加。添加1.50g.L-1紫草多糖可增加cAMP、cGMP含量,但cAMP/cGMP比值下降。结论:紫草多糖可直接作用于促性腺激素的靶细胞——黄体细胞,并抑制hCG诱导黄体细胞分泌功能,该抑制作用起效快,并可能通过cGMP介导。     

Quantum Mechanical Study of the Syn and Anti Conformations of Solvated Cyclic GMP

Self-consistent Reaction Field (SCRF) computational methods have been applied to guanosine 3:5-cyclic monophosphate (cGMP) to determine the geometries and energetics of the syn and anti conformations of this cyclic nucleotide in aqueous solution. The syn conformation of cGMP has been predicted to be more stable in the gas phase due to an internal hydrogen bond. The syn conformation is observed in the crystal structure of the sodium tetrahydrate salt, although a bridging water molecule is present in lieu of the internal hydrogen bond. In the gas phase, we find from Hartree–Fock/6-31+G(d) optimizations that the syn conformation is more stable than the anti by about 4 kcal/mol. However, we report here that the anti conformation is more stable in aqueous solution, according to estimates based upon results from both the Onsager model and the Isodensity Polarized Continuum Method (IPCM). Our best estimate from single-point IPCM B3LYP/6-31+G(d) calculations has the anti conformation 19 kcal/mol lower in energy. For comparison purposes, we also present SCRF results for syn and anti adenosine 3:5-cyclic monophosphate (cAMP). For cAMP, we estimate the anti conformation to be more stable than the syn by about 6 kcal/mol. We suggest that the relative stability of the anti conformation of cGMP be considered in studies, such as, enzyme docking.     

ONIOM investigation of nucleotide selectivity in phosphodiesterases 3 and 4

The cyclic nucleotide phosphodiesterases (PDEs) are drug‐targeted enzymes that down regulate cyclic nucleotide concentrations in the cell by catalyzing the hydrolysis of the O3′‐phosphorous bond, yielding the noncyclic nucleotides. Selectivity for cAMP versus cGMP (cyclic 3′,5′‐adenosine/‐guanosine monophosphate) as the favored substrate is primarily attributed to the orientation of a conserved glutamine residue which binds to the adenine/guanine ring. We use ONIOM hybrid quantum methods to accurately describe substrate binding within the catalytic sites of the cAMP‐specific PDE4 and the cGMP‐inhibited, dual‐specific PDE3 in order to understand subtle aspects of substrate selectivity. We estimate PDE4's net preference for cAMP binding to be about 16 kcal/mol; the cause of cAMP's known preference resides both in its fixed glutamine orientation (Gln 369 in PDE4D) and in the differential free energy of solvation, which disfavors the binding of cGMP relative to cAMP by about 15 kcal/mol. Also, we discuss the contributing role played by Asn 321, held in place by a partner Asp 167, in the deselection of cGMP by PDE4. PDE3's conserved glutamine (Gln 988 in PDE3B) is free to take on either a cGMP‐favorable or cAMP‐favorable orientation. We find that enthalpies of binding favor cGMP for PDE3, but only by the same amount as free energies of solvation disfavor cGMP binding. Comparison of the PDE3‐cAMP and ‐cGMP complexes and energetics reveals cAMP to be more susceptible to the attack of the hydroxide nucleophile in PDE3. We identify a key threonine residue (Thr 952) as responsible for PDE3's kinetic relative disfavor of cGMP hydrolysis by causing Gln 988 to tilt out of cGMP's purine plane. Our results are consistent with the PDE3's kinetic specificity for cAMP hydrolysis and the known competitive inhibition of PDE3 by cGMP. © 2008 Wiley Periodicals, Inc. Int J Quantum Chem, 2008     

The measurement of cyclic nucleotide phosphodiesterase 4 activities via the quantification of inorganic phosphate with malachite green

A spectrometric method was investigated to measure the activities of recombinant human cyclic nucleotide phosphodiesterase 4 (PDE4), based on the use of malachite green (MLG) to quantify phosphate released from adenosine-5′-monophosphate (AMP) by the action of calf intestinal alkaline phosphatase (CIAP). Glycerol at 2% stabilized the complex between MLG and phosphomolybdate, whose absorbance at 630 nm was proportional to phosphate concentrations with resistance to common substances in PDE4 reaction mixtures except papaverine. CIAP had the Michaelis-Menten constant (K_m) of (12.0 ± 2.1) μM (n = 3) for AMP at pH 7.4, and was resistant to EDTA below 0.20 mM. By the coupled end-point assay at 30.0 U L⁻¹ CIAP with reaction durations within 30 min, the rates to release phosphate in PDE4 reaction mixtures containing 10.0 mM MgCl₂ and 0.10 mM EDTA linearly responded to the amounts of PDE4 over wide ranges. Meanwhile, K_m of PDE4 was (8.8 ± 0.2) μM (n = 2), zinc ion inhibited PDE4 and rolipram had the inhibition constant about 10 nM. These results supported that by the coupled end-point assay, this method was promising to screen of PDE inhibitors that had no interference with the MLG assay of phosphate.     

Fourier Transform Infrared Spectroscopic Studies on the Effect of Cyclic Adenosine Monophosphate on the Secondary Structure of Human Erythrocyte Membrane Proteins

Abstract

In this paper, the study on the effect of cAMP on erythrocyte membrane proteins by FTIR, deconvolution and curvefitting was reported. It was found that cAMP affects the secondary structure of membrane proteins by changing random and β-turn regions to the α-helix segments. The regulation of cAMP has a best concentration region, during which cAMP has the strongest regulating function. Meanwhile, cGMP and ATP has a negative effect on membrane proteins' secondary structure comparing to cAMP.