Development of a selective plating technique for the recovery of Escherichia coli O157: H7 after heat stress

The use of Sorbitol MacConkey Agar supplemented with 4-methylumbelliferyl β-D-glucuronide (MSMA), which is commonly used in the isolation of Escherichia coli O157: H7, has been shown to perform poorly when stressed cells of the pathogen are present. The incorporation of a resuscitation period (2 h at 25°C) on Trypticase Soy Agar (TSA) before overlay with MSMA was found to significantly ( P 0·01) improve recovery of heat-stressed (52°C/60 min) cells. Maximal recovery was, however, obtained by adding catalase (1000 U) to the TSA before overlaying with MSMA. This recovery protocol was shown not to result in the loss of the major known virulence factors of E. coli O157: H7 (genes encoding eae , VT1 and VT2).     

Effect of ante- and postmortem hide clipping on the microbiological quality and safety and ultimate pH value of beef carcasses in an EC-approved abattoir

Aims:  Effect of ante- and postmortem hide clipping on the microbiological quality of beef carcasses. Methods and Results:  Bovine carcasses (362) were tested for indicator micro-organisms and the presence of pathogens. Prior to slaughter, hide cleanliness of each animal was categorized on a scale of 1–5 (clean to dirty). Lowest mean aerobic colony counts (ACC) (log₁₀ 3·0 CFU cm⁻²) came from carcasses where clipping had been performed in lairage, antemortem. ACC from animals clipped online (log₁₀ 3·2 CFU cm⁻²) were significantly higher (P < 0·05) than those clipped in lairage, but comparable to those carcasses from Category 1 and 2 animals. There were no significant differences in the detection of pathogens from any of the carcass groups. Ultimate pH values for carcasses from Category 3 and 4 animals showed clipping animals in lairage, as opposed to online, resulted in a small, but significant increase (P < 0·05) in pH value (mean pH 5·66 and 5·59, respectively). Conclusions:  Hide clipping does not adversely affect microbiological quality of carcasses, although higher ultimate pH values indicate increases in antemortem stress. Significance and Impact of the Study:  Hide clipping carcasses both ante- and postmortem appears to be an effective intervention to minimize transfer of hide microflora to carcasses during slaughtering operations. Online clipping offers advantages for animal welfare and improves safety for operatives.     

Mitochondrial DNA structure and colony expansion dynamics of New Zealand fur seals (Arctocephalus forsteri) around Banks Peninsula

New Zealand fur seals are one of many pinniped species that survived the commercial sealing of the eighteenth and nineteenth centuries in dangerously low numbers. After the enforcement of a series of protection measures in the early twentieth century, New Zealand fur seals began to recover from the brink of extinction. We examined the New Zealand fur seal populations of Banks Peninsula, South Island, New Zealand using the mitochondrial DNA control region. We identified a panmictic population structure around Banks Peninsula. The most abundant haplotype in the area showed a slight significant aggregated structure. The Horseshoe Bay colony showed the least number of shared haplotypes with other colonies, suggesting a different origin of re-colonisation of this specific colony. The effective population size of the New Zealand fur seal population at Banks Peninsula was estimated at approximately 2500 individuals. The exponential population growth rate parameter for the area was 35, which corresponds to an expanding population. In general, samples from adjacent colonies shared 4.4 haplotypes while samples collected from colonies separated by between five and eight bays shared 1.9 haplotypes. The genetic data support the spill-over dynamics of colony expansion already suggested for this species. Approximate Bayesian computations analysis suggests re-colonisation of the area from two main clades identified across New Zealand with a most likely admixture coefficient of 0.41 to form the Banks Peninsula population. Approximate Bayesian computations analysis estimated a founder population size of approximately 372 breeding individuals for the area, which then rapidly increased in size with successive waves of external recruitment. The population of fur seals in the area is probably in the late phase of maturity in the colony expansion dynamic.     

Exotic grasses and nitrate enrichment alter soil carbon cycling along an urban–rural tropical forest gradient

Urban areas are expanding rapidly in tropical regions, with potential to alter ecosystem dynamics. In particular, exotic grasses and atmospheric nitrogen (N) deposition simultaneously affect tropical urbanized landscapes, with unknown effects on properties like soil carbon (C) storage. We hypothesized that (H1) soil nitrate (NO₃^?) is elevated nearer to the urban core, reflecting N deposition gradients. (H2) Exotic grasslands have elevated soil NO₃^? and decreased soil C relative to secondary forests, with higher N promoting decomposer activity. (H3) Exotic grasslands have greater seasonality in soil NO₃^? vs. secondary forests, due to higher sensitivity of grassland soil moisture to rainfall. We predicted that NO₃^? would be positively related to dissolved organic C (DOC) production via changes in decomposer activity. We measured six paired grassland/secondary forest sites along a tropical urban‐to‐rural gradient during the three dominant seasons (hurricane, dry, and early wet). We found that (1) soil NO₃^? was generally elevated nearer to the urban core, with particularly clear spatial trends for grasslands. (2) Exotic grasslands had lower soil C than secondary forests, which was related to elevated decomposer enzyme activities and soil respiration. Unexpectedly, soil NO₃^? was negatively related to enzyme activities, and was lower in grasslands than forests. (3) Grasslands had greater soil NO₃^? seasonality vs. forests, but this was not strongly linked to shifts in soil moisture or DOC. Our results suggest that exotic grasses in tropical regions are likely to drastically reduce soil C storage, but that N deposition may have an opposite effect via suppression of enzyme activities. However, soil NO₃^? accumulation here was higher in urban forests than grasslands, potentially related to of aboveground N interception. Net urban effects on C storage across tropical landscapes will likely vary depending on the mosaic of grass cover, rates of N deposition, and responses by local decomposer communities.     

Environmental stochasticity and extinction risk in a population of a small songbird, the great tit

Using a long-term demographic data set, we estimated the separate effects of demographic and environmental stochasticity in the growth rate of the great tit population in Wytham Wood, United Kingdom. Assuming logistic density regulation, both the demographic (sigma2d = 0.569) and environmental (sigma2e = 0.0793) variance, with interactions included, were significantly greater than zero. The estimates of the demographic variance seemed to be relatively insensitive to the length of the study period, whereas reliable estimates of the environmental variance required long time series (at least 15 yr of data). The demographic variance decreased significantly with increasing population density. These estimates are used in a quantitative analysis of the demographic factors affecting the risk of extinction of this population. The very long expected time to extinction of this population (approximately 10(19) yr) was related to a relatively large population size (>/=120 pairs during the study period). However, for a given population size, the expected time to extinction was sensitive to both variation in population growth rate and environmental stochasticity. Furthermore, the form of the density regulation strongly affected the expected time to extinction. Time to extinction decreased when the maximum density regulation approached K. This suggests that estimates of viability of small populations should be given both with and without inclusion of density dependence.     

Optimal decision rules for herring gulls

A measure of fitness applicable to herring gull (Larus argentatus) life histories is introduced and related to short-term risks which depend on behaviour. This allows calculations of the relationship between fitness and behaviour if one can measure the risks an animal takes behaving in particular ways in specified situations. This method is used to evaluate the fitness of herring gulls during the incubation period at Walney Island, U.K. Two causes of egg mortality are considered, death by predation and death by exposure, and the latter is shown to be less important than the former. The chances of death by predation depend on the number of adults present on the territory and are estimated to be approximately 0·045 eggs per h if no parents are present on territory, 3·5×10^?4 eggs per h if one parent is present and 6·7×10^?4 eggs per h if two parents are present. Adult death by starvation is assumed to occur when energy reserves are exhausted; however a fitness cost is incurred if an animal maintains excess energy reserves. To restrict the number of behaviour sequences examined to manageable proportions, attention is restricted to the behaviour sequences that result from decision rules in which feeding occurs when energy reserves fall below a set point. Then optimal behaviour is characterized by (1) energy reserves maintained between 500 and 1200 kcal; (2) complementarity of mates' feeding preferences such that at least one of the pair feeds at a refuse tip; (3) parental desertion of offspring if energy reserves fall below 200 kcal; (4) parents spending the minimum possible time together on territory. These results are shown by sensitivity analysis to be insensitive to parameter errors in the model. Treating these characteristics of optimal behaviour as predictions about actual behaviour reveals that predictions 1 and 2 are correct, and prediction 4 is wrong. An experiment was designed to test prediction 3 by estimating the fat reserves of life birds and measuring how long each would continue incubation in the absence of its mate. Fatter birds did continue incubation for longer though the quantitative detail did not match prediction 3 exactly. Thus two aspects of behaviour tally with our calculation as to what is optimal, but one does not. This conclusion is discussed.     

Morphological variation in the horse: defining complex traits of body size and shape

Horses, like many domesticated species, have been selected for broad variation in skeletal size. This variation is not only an interesting model of rapid evolutionary change during domestication, but is also directly applicable to the horse industry. Breeders select for complex traits like body size and skeletal conformation to improve marketability, function, soundness and performance in the show ring. Using a well-defined set of 35 measurements, we have identified and quantified skeletal variation in the horse species. We collected measurements from 1215 horses representing 65 breeds of diverse conformation such as the American Miniature, Shetland Pony, Arabian Horse, Thoroughbred, Shire and Clydesdale. Principal components analysis has identified two key dimensions of skeletal variation in the horse. Principal component 1 is positively correlated with every measurement and quantifies overall body size. Principal component 2 captures a pattern of bone widths vs. lengths and thus quantifies variation in overall bone thickness. By defining these complex skeletal traits, we have created a framework for whole genome association studies to identify quantitative trait loci that contribute to this variation.