The Role of Rigid Residues in Modulating TEM-1 β-Lactamase Function and Thermostability

The relationship between protein motions (i.e., dynamics) and enzymatic function has begun to be explored in β-lactamases as a way to advance our understanding of these proteins. In a recent study, we analyzed the dynamic profiles of TEM-1 (a ubiquitous class A β-lactamase) and several ancestrally reconstructed homologues. A chief finding of this work was that rigid residues that were allosterically coupled to the active site appeared to have profound effects on enzyme function, even when separated from the active site by many angstroms. In the present work, our aim was to further explore the implications of protein dynamics on β-lactamase function by altering the dynamic profile of TEM-1 using computational protein design methods. The Rosetta software suite was used to mutate amino acids surrounding either rigid residues that are highly coupled to the active site or to flexible residues with no apparent communication with the active site. Experimental characterization of ten designed proteins indicated that alteration of residues surrounding rigid, highly coupled residues, substantially affected both enzymatic activity and stability; in contrast, native-like activities and stabilities were maintained when flexible, uncoupled residues, were targeted. Our results provide additional insight into the structure-function relationship present in the TEM family of β-lactamases. Furthermore, the integration of computational protein design methods with analyses of protein dynamics represents a general approach that could be used to extend our understanding of the relationship between dynamics and function in other enzyme classes.     

Self Assembly of Polymer Structures Induced by Electric Field

A method has been developed for fabricating polymer microstructures based on electric field induced self assembly and pattern formation. A dielectric fluid placed in between two conductive plates experience a force in an applied electric field gradient across the plates, which can induce a diffusive surface instability and self construction of the fluid surface. This process is exploited for the fabrication of self assembled polymer microstructures as well as replicated patterns through the use of pre-patterned plates or electrodes. FEM simulation is used to decide the minimum wavelength and electric gradient distribution of polymer structures. A variety of structures in the micron and nanometer scales including bio-fluidic MEMS, polymer optoelectronic devices can be fabricated using this method.     

Investigation of bio-ethanol steam reforming over cobalt-based catalysts

The catalytic performance of cobalt catalysts supported on γ-Al₂O₃, TiO₂, ZrO₂ were studied for bio-ethanol steam reforming (BESR) reaction. The supported catalysts (10 wt%Co) were prepared by impregnation and characterized through Thermogravimetric analysis (TGA), H₂ chemisorption, laser Raman Spectroscopy, Diffuse Reflectance Infrared Fourier Transform Spectroscopy (DRIFTS), and temperature-programmed reaction (TPRxn). The metallic cobalt sites were found to correlate with the BESR reaction activity. The reaction and H₂ chemisorption showed that ZrO₂ supported catalyst showed the best dispersion and best catalytic activity. Over the 10% Co/ZrO₂ catalyst, using a H₂O:EtOH:inert molar ratio of 10:1:75 and a GHSV = 5000 h⁻¹, 100% ethanol conversion and a yield of 5.5 mol H₂/mol EtOH were obtained at 550 °C and atmospheric pressure.     

Investigation of the Reduction/Oxidation Behavior of Cobalt Supported on Nano-ceria

The oxidation and reduction behavior of cobalt catalysts supported on nano-ceria (5–8 nm) was investigated under hydrogen, oxygen and water atmospheres. A novel quantitative isothermal reduction (QIR) technique was introduced to analyze the kinetics and activation barrier of Co reduction. CoO to Co reduction was found to be of first order in the 250–350 °C temperature range. Temperature programmed reduction and oxidation experiments were conducted and the Kissinger method was used to obtain apparent activation energies for reduction and oxidation with O₂. The apparent activation energy for CoO reduction was found to agree with that obtained from the QIR technique. Re-oxidation of Co metal was found to have a slightly lower activation energy barrier than the reduction. The reduction and oxidation behavior was further investigated with in situ XANES where the reaction order for reduction was observed to change at 450 °C. The pre-reduced samples were seen to re-oxidize under a water atmosphere, where the oxidation followed first order kinetics. Re-oxidation by water yielded a higher activation energy when compared to re-oxidation under oxygen.     

Electrokinetic and antibacterial properties of needle like‐TiO2/polyrhodanine core/shell hybrid nanostructures

The aim of this study was to fabricate needle like‐TiO₂/polyrhodanine nanostructures by polymerizing rhodanine monomer on the TiO₂ nanoparticles' surfaces and investigate their antibacterial activities. The structural, thermal, morphological, surface and electrical properties of non‐covalently functionalized nanoparticles were characterized by using FTIR, XPS, elemental analysis, TGA, XRD, SEM‐EDX, TEM, contact angle, and conductivity measurements. Characterization results confirmed the formation of needle like‐TiO₂/polyrhodanine (PRh) core/shell hybrid nanostructures. Alterations on the surface and electrokinetic properties of the materials were characterized by zeta (ζ)‐potential measurements with the presence of various salts and surfactants. The ζ‐potential of needle like‐TiO₂ was observed to increase from ?7.6 mV to +28.4 mV after forming a core/shell needle like‐TiO₂/PRh nanocomposite structure and with the presence of cetyltrimethyl ammonium bromide (CTAB) surfactant. Thereby colloidally more stable dispersions were formed. Antibacterial properties of needle like‐TiO₂/PRh were also tested against Staphylococcus aureus, Klebsiella pneumoniae, and Escherichia coli by various methods and they showed good antibacterial activity. The highest killing efficiency was determined for needle like‐TiO₂/PRh against E. coli by colony‐counting method as 0.95. TEM experiments also showed the immobilizations of the nanoparticles on E. coli and revealed the interactions between E. coli and the nanoparticles. © 2014 Wiley Periodicals, Inc. J. Appl. Polym. Sci. 2015 , 132, 41554.     

Flocculation of coal suspension with mono/dual polymer systems and contribution of Ca(II)/Mg(II) ions

In the experimental study carried out on mono-flocculation, anionic and especially non-ionic polymers strongly flocculated the coal suspension than cationic polymer. The dual-flocculation of the coal suspension with cationic and anionic polymer combination was also studied and the high performances of flocculation were also reached with dual-polymer approach. Furthermore, dual-polymer system required lower concentrations for the successful flocculation of coal particles. On the other hand, the pre-destabilization of the coal suspension with calcium and magnesium ions at particular pH and concentrations highly improved the flocculation of fine coal particles with these polymers.     

Effective electrodeposition of poly(3,4-ethylenedioxythiophene)-based organic coating on metallic food packaging for active corrosion protection

Journal of Applied Electrochemistry - Modern technologies continuously need special materials with specific properties to adopt the desired application. Recently, numerous researches have been...     

Modulus of elasticity of substandard and normal concretes

Modulus of elasticity is an important parameter used for the structural assessment and retrofitting of concrete structures. In this study, an experimental investigation on the modulus of elasticity of concrete was carried out, the results of which is presented. 60 mixtures were prepared, in which the effects of water/cement ratio, maximum size of the aggregate, aggregate type, and fly ash content were investigated. In order to obtain very low quality concrete, the water/cement ratios were increased to as high as 2.2. Modulus of elasticity of the concretes was obtained according to ASTM C469. Compressive strength and ultrasound pulse velocities of the concretes were also recorded. The experimentally obtained modulus of elasticity values were compared with those calculated by using prediction models given in a selection of codes of practice. Dynamic moduli of elasticity of the concretes were also obtained.