On the bogussing of tropical cyclones in numerical models: A comparison of vortex profiles

Summary At the resolutions currently in use, and with the sparse oceanic data coverage, numerical analyses cannot adequately represent tropical cyclone circulations for use in numerical weather prediction models. In many cases there is no circulation present at all. Most numerical weather prediction centers therefore employ a bogussing scheme to force a tropical cyclone vortex into the numerical analysis. The standard procedure is to define a synthetic data distribution based on an analytically prescribed vortex, which is passed to the analysis scheme as a set of high quality observations.In this study, four commonly used bogus vortices are examined by comparing resultant forecast tracks in an environment at rest, and in a background flow that simulates a typical monsoon trough-subtropical ridge structure. There are three main findings, each of which has significance for operational tropical cyclone track prediction. First, great care is needed in the choice of the characteristics of the bogus vortex, such as the radius and magnitude of the maximum wind. Second, the tropical cyclone trajectories can be very sensitive to their initial position in the idealised environment. Third, the bogus vortex can substantially influence the environment, especially over longer time periods and for vortices of larger size.With 9 Figures     

A comparative study of the performance of various vertical discretization schemes

Summary Most finite-difference numerical weather prediction models employ vertical discretizations that are staggered, and are low-order (usually second-order) approximations for the important terms such as the derivation of the geopotential from the hydrostatic equation, and the calculation of the vertically integrated divergence. In a sigma-coordinate model the latter is used for computing both the surface pressure change and the vertical velocity. All of the above-mentioned variables can diminish the accuracy of the forecast if they are not calculated accurately, and can have an impact on related quantities such as precipitation.In this study various discretization schemes in the vertical are compared both in theory and in practice. Four different vertical grids are tested: one unstaggered and three staggered (including the widely-used Lorenz grid). The comparison is carried out by assessing the accuracy of the grids using vertical numerics that range from second-order up to sixth-order.The theoretical part of the study examines how faithfully each vertical grid reproduces the vertical modes of the governing equations linearized with a basic state atmosphere. The performance of the grids is evaluated for 2nd, 4th and 6th-order numerical schemes based on Lagrange polynomials, and for a 6th-ordercompact scheme.Our interpretation of the results of the theoretical study is as follows. The most important result is that the order of accuracy employed in the numerics seems to be more significant than the choice of vertical grid. There are differences between the grids at second-order, but these differences effectively vanish as the order of accuracy increases. The sixth-order schemes all produce very accurate results with the grids performing equally well, and with the compact scheme significantly outperforming the Lagrange scheme. A second major result is that for the number of levels typically used in current operational forecast models, second-order schemes (which are used almost universally) all appear to be relatively poor, for other than the lowest modes.The theoretical claims were confirmed in practice using a large number (100) of forecasts with the Australian Bureau of Meteorology Research Centre's operational model. By comparing test model forecasts using the four grids and the different orders of numerics with very high resolution control model forecasts, the results of the theoretical study seem to be corroborated.With 8 Figures     

The origin and distribution of HAPs elements in relation to maceral composition of the A1 lignite bed (Paleocene, Calvert Bluff Formation, Wilcox Group), Calvert mine area, east-central Texas

The origin and distribution of twelve potentially Hazardous Air Pollutants (HAPs; As, Be, Cd, Cr, Co, Hg, Mn, Ni, Pb, Sb, Se, and U) identified in the 1990 Clean Air Act Amendments were examined in relation to the maceral composition of the A1 bed (Paleocene, Calvert Bluff Formation, Wilcox Group) of the Calvert mine in east-central Texas. The 3.2 m-thick A1 bed was divided into nine incremental channel samples (7 lignite samples and 2 shaley coal samples) on the basis of megascopic characteristics. Results indicate that As, Cd, Cr, Ni, Pb, Sb, and U are strongly correlated with ash yield and are enriched in the shaley coal samples. We infer that these elements are associated with inorganic constituents in the coal bed and may be derived from a penecontemporaneous stream channel located several kilometers southeast of the mining block. Of the HAPs elements studied, Mn and Hg are the most poorly correlated to ash yield. We infer an organic association for Mn; Hg may be associated with pyrite. The rest of the trace elements (Be, Co, and Se) are weakly correlated with ash yield. Further analytical work is necessary to determine the mode of occurrence for these elements. Overall, concentrations of the HAPs elements are generally similar to or less than those reported in previous studies of lignites of the Wilcox Group, east-central region, Texas. Petrographic analysis indicates the following ranges in composition for the seven lignite samples: liptinites (5–8%), huminites (88–95%), and inertinites (trace amounts to 7%). Samples from the middle portion of the A1 bed contain abundant crypto-eugelinite compared to the rest of the samples; this relationship suggests that the degradation of plant material was an important process during the development of the peat mire. With the exception of Hg and Mn, relatively low levels of the HAPs elements studied are found in the samples containing abundant crypto-eugelinite. We infer that the peat-forming environment for this portion of the coal bed was very wet with minimal detrital input. Relatively high concentrations of crypto-humotelinite were found in samples from the top and base of the coal bed. The presence of abundant crypto-humotefinite in this part of the coal bed suggests the accumulation of wood-rich peat under conditions conducive to a high degree of tissue preservation in the peat mire. Although several of the trace elements (Be, Co, Ni, and Sb) exhibit enrichment in these samples, they are not necessarily chemically associated with humotelinite. We infer that these elements, with the exception of Be, are possibly associated with deposition of the roof and floor rock of the coal bed; however, further analytical work would be necessary to confirm this hypothesis. Beryllium may have an organic origin.     

The effect of surface roughness on the transmission of microwave radiation through a planetary surface

To account for surface roughness, the transmission of microwave radiation through a planetary surface to an observer is treated by a Monte Carlo technique. Sizable effects are found near the limb of the planet, and they should be included in analyses of high-resolution observations and high-precision integrated disk observations.     

Characterization of bacterial community structure in vestimentiferan tubeworm Ridgeia piscesae trophosomes

Terminal‐restriction fragment length polymorphisms (T‐RFLPs) were used to address the question whether there are multiple phylotypes of bacteria within the trophosome of the vestimentiferan tubeworm Ridgeia piscesae in addition to the known endosymbiont. Clone libraries were constructed to aid in the identification of the additional bacterial phylotypes. Individual R. piscesae specimens were collected from Juan de Fuca Ridge, Axial Caldera and Explorer Ridge, Magic Mountain. Clone library analyses revealed only one bacterial phylotype (expected R. piscesae endosymbiont) within the Explorer Ridge trophosomes. However, the Axial Caldera clone library revealed five operational taxonomic units (OTUs). Three of the resulting phylotypes detected (designated RAE) were putative thioautotrophic symbionts within the γ‐Proteobacteria which belonged to the anticipated endosymbiont group (RAE OTU 1), the Maorithyas hadalis symbiont II group (RAE OTU 3), and the Halothiobacillus group (RAE OTU 4). The remaining two phylotypes were most likely opportunistically derived. RAE OTU 5 was an α‐Proteobacterium within the Roseobacter group and RAE OTU 2 was within the Cytophaga–Flavobacterium–Bacteroidetes. T‐RFLP analyses revealed that all 15 trophosomes evaluated contained at least RAE OTUs 1 and 4. Five of the 15 trophosomes contained at least RAE OTUs 1, 3, and 4 and two of the trophosomes contained at least five RAE OTUs. Cluster analysis of the T‐RFLP data revealed three distinct clusters. The number of taxa within the trophosome may be an indication of the general health of the tubeworm. This study strongly suggests that we have discovered and identified more than one bacterial phylotype within the trophosome of vestimentiferan R. piscesae.     

Vertical variations of the chlorophyll maximum during a red tide in a shallow lagoon

The results of eight sets of repeated observations on the vertical variations of the chlorophyll maximum layer in a shallow lagoon during a red tide show that these were more frequently hydrologically induced, rather than due to active vertical migrations of the red tide-forming organism. These results are discussed and compared to those existing in the literature, with special regard to the role of light and nitrogen in conditioning vertical migrations in red tide-forming dinoflagellates.     

The effects of vertical shear and stratification on stationary rossby waves

Abstract

The generation of stationary Rossby waves by sources of potential vorticity in a westerly flow is examined here in the context of a two-layer, quasi-geostrophic, β-plane model. The response in each layer consists of a combination of a barotropic Rossby wave disturbance that extends far downstream of the source, and a baroclinic disturbance which is evanescent or wave-like in character, depending on the shear and degree of stratification. Contributions from each of these modes in each layer are strongly dependent on the basic flows in each layer; the degree of stratification; and the depths of the two layers. The lower layer response is dominated by an evanescent baroclinic mode when the upper layer westerlies are much larger than those in the lower layer. In this case, weak stationary Rossby waves of large wavelengths are confined to the upper layer and the disturbance in the lower layer is confined to the source region.

Increasing the upper layer flow (with the lower layer flow fixed) increases the Rossby wavelength and decreases the amplitude. Decreasing the lower layer flow (with the upper layer flow fixed) decreases the wavelength and increases the amplitude. Stratification increases the contribution from the barotropic wave-like mode and causes the response to be confined to the lower layer.

The finite amplitude response to westerly flow over two sources of potential vorticity is also considered. In this case stationary Rossby waves induced by both sources interact to reinforce or diminish the downstream wave pattern depending on the separation distance of the sources relative to the Rossby wavelength. For fixed separation distance, enhancement of the downstreatm Rossby waves will only occur for a narrow range of flow variables and stratification.