Ecologic and taxonomic diversification in the Mesozoic brackish-water bivalve faunas in Japan, with emphasis on infaunalization of heterodonts

Mesozoic brackish-water bivalve faunas in Japan diversified in three steps: at the beginning of the Early Jurassic, Early and Late Cretaceous. The Hettangian Niranohama Fauna in northeastern Honshu represents the establishment of a heterodont-dominated brackish-water fauna that persisted until the early Late Cretaceous. No similar composition is known from the Triassic. The infauna consists mostly of non-siphonate and some short-siphonate heterodonts, while the epifauna is represented by diverse pteriomorphian families. In the Early Cretaceous Tetori Group in central Honshu, the long-siphonate heterodonts Tetoria (Corbiculidae) and the semi-infaunal soft-bottom oyster Crassostrea appeared. The evolutionary diversification of the latter, known as the most important element of modern brackish-water faunas, may thus originate at that time. In the early Late Cretaceous (Cenomanian) of the Goshoura and Mifune Groups in west Kyushu, several euryhaline deep-burrowing heterodont families, such as Veneridae and Tellinidae, further diversified in the brackish and marine environments. The Late Cretaceous is characterized by massive shell biolithic beds in which large Crassostrea species are common, a feature common for Cenozoic brackish-water faunas. The long-term changes in the composition of the brackish-water faunas in Japan represents thus an evolutionary record, irrespective of the severe physiological and environmental conditions imposed on the highly conservative nature of the fauna.     

High-frequency ocean radar derived characteristics of sea surface currents in the Ariake Sea,Japan

Composite analysis was conducted using high-frequency radar data obtained during 2006–2015 in order to gain a better understanding of the current field in the Ariake Sea. The seasonally averaged surface current in the Ariake Sea was directed southward in all seasons, except around river mouths during summer. Heavy rainfall enhanced the outflow along the eastern coast of the Shimabara Peninsula from Isahaya Bay to the southern area 2–5 days after heavy rainfall. Spring–neap differences were clearly seen in the southward current along the Shimabara Peninsula. Interannual variation in the M₂ tidal current amplitude was synchronized with the lunar nodal cycle.     

Application of Atomic Force Microscopy to Observation of Marine Bacteria

The atomic force microscopy (AFM) is a recently developed, bench-top instrument that can image the surface structures of biological specimens at high resolution with simultaneous measurement of their size. This paper describes the application of AFM to marine bacteria. Both natural and cultured bacteria were retained on a filter or placed on glass, washed, air-dried and observed by AFM. The instrumental condition, the choice of suitable filter, effect of fixation and filtration, comparison with epifluorescent microscopic (EFM) count, and the size and shape of bacterial cells were investigated. An Isopore filter was best for concentration and subsequent observation because of its surface flatness. Cross section images showed that both rod and coccoid cells were flattened, the former usually having a two-humped shape. Bacterial cells were differentiated from non-living particles based on their cross section shape and size. Bacterial counts by AFM and EFM showed good agreement. Although size measurement is easily done by the instrument, AFM tends to overestimate the size of microspheres. More work is thus needed on the size measurement of living organisms. Because AFM easily provides images of natural bacterial cells at high magnification, it can be used as a new tool to study the fine structures of marine bacteria. This revised version was published online in July 2006 with corrections to the Cover Date.     

Habitability analyses of aquatic bacteria

Habitability is defined as an ability of an organism to inhabit different environments. Habitability of organisms, however, cannot be inferred from analyses such as a whole genome or community structures. A recently developed database, the MetaMetaDB, gives us information from what kind of environments one particular 16S rRNA sequence data has ever been obtained, and thus enables us to infer the habitability of the bacterium in question. In order to check the applicability of this database to study the habitability of aquatic bacteria, samples collected at two Naka River stations, one estuarine station from Naka River Estuary, two coastal stations at Oarai in Ibaraki Prefecture, Japan and one station in the Kuroshio Current of the western North Pacific were examined. The phylotypes were tracked against the MetaMetaDB and it was reasonably found that the low-salinity stations were dominated by sequences with “freshwater and groundwater”, “human” and “wastewater” habitat identities, while the high-salinity stations were dominated by those with a “marine” identity. The phylotypes of low-salinity stations with a particular habitat identity were absent or rare in the high-salinity stations and vice versa. The MetaMetaDB also showed that sequences of Cyanobacteria or related phylogenetic groups may be present in the human gut, as well as the probable distribution of the relatives (ancestors/descendants/siblings) of some bacteria. These overall findings proved that the MetaMetaDB is useful as a new tool to infer microbial habitability and it gives us new information on the possible origin and ecology of microorganisms in the environments.     

Numerical study of the summer temperature decrease induced by the enhancement of estuarine circulation in Fukuoka Bay

The Princeton Ocean Model with realistic bottom topography has been used to investigate the summer temperature decrease in the past 25 years in Fukuoka Bay. The vertical mixing of the model is expressed by a scheme that effectively includes the influences of interannual variations of tidal currents and wind. The results show that the historical temperature decrease in summer has been caused by tidal currents and wind weakening in the past 25 years in Fukuoka Bay. The weakening of tidal currents and wind gives rise to weakening of the vertical mixing, and to enhancement of the estuarine circulation in the bay. The enhancement of the estuarine circulation activates the inflow of open-ocean water toward Fukuoka Bay. Coastal water in summer has therefore tended to be colder and more saline in the past 25 years. This interannual variation in coastal waters is called “open-oceanization” in this study. On the basis of the numerical model, it is anticipated that the temperature will decrease by 0.2°C in the next 25 years in Fukuoka Bay if the tide and wind weaken persistently as in the present bay.     

Tectonic implications of new age data for the Meratus Complex of south Kalimantan, Indonesia

Cretaceous subduction complexes surround the southeastern margin of Sundaland in Indonesia. They are widely exposed in several localities, such as Bantimala (South Sulawesi), Karangsambung (Central Java) and Meratus (South Kalimantan).
The Meratus Complex of South Kalimantan consists mainly of mélange, chert, siliceous shale, limestone, basalt, ultramafic rocks and schists. The complex is uncomformably covered with Late Cretaceous sedimentary-volcanic formations, such as the Pitap and Haruyan Formations.
Well-preserved radiolarians were extracted from 14 samples of siliceous sedimentary rocks, and K–Ar age dating was performed on muscovite from 6 samples of schist of the Meratus Complex. The radiolarian assemblage from the chert of the complex is assigned to the early Middle Jurassic to early Late Cretaceous. The K–Ar age data from schist range from 110 Ma to 180 Ma. Three samples from the Pitap Formation, which unconformably covers the Meratus Complex, yield Cretaceous radiolarians of Cenomanian or older.
These chronological data as well as field observation and petrology yield the following constraints on the tectonic setting of the Meratus Complex.
(1) The mélange of the Meratus Complex was caused by the subduction of an oceanic plate covered by radiolarian chert ranging in age from early Middle Jurassic to late Early Cretaceous.
(2) The Haruyan Schist of 110–119 Ma was affected by metamorphism of a high pressure–low temperature type caused by oceanic plate subduction. Some of the protoliths were high alluminous continental cover or margin sediments. Intermediate pressure type metamorphic rocks of 165 and 180 Ma were discovered for the first time along the northern margin of the Haruyan Schist.
(3) The Haruyan Formation, a product of submarine volcanism in an immature island arc setting, is locally contemporaneous with the formation of the mélange of the Meratus Complex.     

Mixing of magmatic CO2 into volcano groundwater flow at Aso volcano assessed combining carbon and water stable isotopes

To understand deep groundwater flow systems and their interaction with CO₂ emanated from magma at depth in a volcanic edifice, deep groundwater samples were collected from hot spring wells in the Aso volcanic area for hydrogen, oxygen and carbon isotope analyses and measurements of the stable carbon isotope ratios and concentrations of dissolved inorganic carbon (DIC). Relations between the stable carbon isotope ratio (δ¹³C_DIC) and DIC concentrations of the sampled waters show that magma-derived CO₂ mixed into the deep groundwater. Furthermore, groundwaters of deeper areas, except samples from fumarolic areas, show higher δ¹³C_DIC values. The waters' stable hydrogen and oxygen isotope ratios (δD and δ¹⁸O) reflect the meteoric-water origin of that region's deep groundwater. A negative correlation was found between the altitude of the well bottom and the altitude of groundwater recharge as calculated using the equation of the recharge-water line and δD value. This applies especially in the Aso-dani area, where deeper groundwater correlates with higher recharge. Groundwater recharged at high altitude has higher δ¹³C_DIC of than groundwater recharged at low altitude, strongly suggesting that magmatic CO₂ is present to a much greater degree in deeper groundwater. These results indicate that magmatic CO₂ mixes into deeper groundwater flowing nearer the magma conduit or chamber.     

Jurassic Dextral and Cretaceous Sinistral Movements Along the Hida Marginal Belt

The Hida marginal belt (HMB), which consists of various kinds of fault-bound blocks, is located between the continental massif of the Hida belt and the Mesozoic accretionary complex of the Mino belt in Central Japan. Detailed field investigation reveals that the HMB had grown through the two different movements, i.e., Jurassic dextral and Cretaceous sinistral movements. The Jurassic dextral ductile shear zones run in the southern marginal part of the Hida belt and the northern part of the HMB, whereas the Cretaceous sinistral cataclastic shear zones occur in the southern part of the HMB and the northern marginal part of the Mino belt. Geologic map and field evidence seem to suggest that the Jurassic dextral movement form the fault-bound blocks of the HMB to form the basic structure of the Hida marginal belt, i.e., formation of the ‘proto-HMB.’ Following the dextral movement, the sinistral one restructured the ‘proto-HMB’ to complete the present feature of the Hida marginal belt. The Cretaceous sinistral movement might result in the sinistral collision between the proto-HMB and the Mino belt.     

Experimental study of the alteration process of labradorite in acid hydrothermal solutions

Labradorite was altered artificially by HC1 solution ranging from M = 1 to M = 0.003 at 245 and 230°C. The products of alteration were examined by X-ray diffraction, electron microscopy, electron diffraction, infrared spectroscopy and the electron microprobe and the solution was analyzed chemically.Amorphous silica only was formed in solutions with M_HCl = 1 and M_HCl = 0.3. In a solution with M_HCl = 0.2, amorphous silica was initially formed, later dissolved and replaced by kaolinite. A mixture of microcrystalline boehmite and amorphous aluminosilicate was formed, altering to kaolinite in solutions with M_HCl = 0.1 and 0.3. Small amounts of kaolinite were initially formed but the alteration soon stopped in solution with M_HCl = 0.003. Relationships between the alteration processes and pH of the solutions can be roughly explained by using solubility diagrams assuming the congruent dissolution of labradorite and precipitation of the products in partial equilibrium. However, these assumptions are not valid with strongly acid solutions.The rate of dissolution of labradorite is controlled not only by its surface area, but also by the diffusion of matter through the layer of alteration products.