An extended ab initio QM/MM MD approach to structure and dynamics of Zn(II) in aqueous solution

Structural and dynamical properties of Zn(II) in aqueous solution were investigated, based on an ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics simulation at double-zeta Hartree-Fock quantum mechanical level including the first and second hydration shells into the QM region. The inclusion of the second shell in the QM region resulted in significant changes in the properties of the hydrate. The first shell coordination number was found to be 6, the second shell consists of approximately 14 water molecules. The structural properties were determined in terms of RDF, ADF, tilt and theta angle distributions, while dynamics were characterized by mean ligand residence times, ion-ligand stretching frequencies and the vibrational and librational motions of water ligands.     

Band parameters of α-LiBeN semiconductor from density functional calculations

The structural, elastic, electronic, optical and thermal properties of α phase in LiBeN semiconductor have been studied using pseudo-potential plane wave method based on the density functional theory. The computed lattice parameter agrees well with previous theoretical work. The elastic constants and their pressure dependence are predicted using the static finite strain technique. A set of isotropic elastic parameters and related properties, namely bulk and shear moduli, Young’s modulus, Poisson’s ratio, average sound velocity and Debye temperature are numerically estimated in the frame work of the Voigt–Reuss–Hill approximation for α-LiBeN polycrystalline aggregate. The assignments of the structures in the optical spectra and band structure transitions have been examined and discussed. The thermal effect on heat capacities is investigated by the quasi-harmonic Debye model. To the best of our knowledge, most of the studied properties of the material of interest are reported for the first time.     

Theoretical study of the structural, elastic, electronic and thermal properties of the MAX phase Nb2SiC

Structural, elastic, electronic and thermal properties of the MAX phase Nb₂SiC are studied by means of a pseudo-potential plane-wave method based on the density functional theory. The optimized zero pressure geometrical parameters are in good agreement with the available theoretical data. The effect of high pressure, up to 40 GPa, on the lattice constants shows that the contractions along the c-axis were higher than those along the a-axis. The elastic constants C_ij and elastic wave velocities are calculated for monocrystal Nb₂SiC. Numerical estimations of the bulk modulus, shear modulus, Young’s modulus, Poisson’s ratio, average sound velocity and Debye temperature for ideal polycrystalline Nb₂SiC aggregates are performed in the framework of the Voigt-Reuss-Hill approximation. The band structure shows that Nb₂SiC is an electrical conductor. The analysis of the atomic site projected densities and the charge density distribution shows that the bonding is of covalent-ionic nature with the presence of metallic character. The density of states at Fermi level is dictated by the niobium d states; Si element has a little effect. Thermal effects on some macroscopic properties of Nb₂SiC are predicted using the quasi-harmonic Debye model, in which the lattice vibrations are taken into account. The variations of the primitive cell volume, volume expansion coefficient, bulk modulus, heat capacity and Debye temperature with pressure and temperature in the ranges of 0-40 GPa and 0-2000 K are obtained successfully.     

First-principles study of structural, elastic, electronic and optical properties of SrMO3 (M=Ti and Sn)

We present structural, elastic, electronic and optical properties of the perovskites SrMO₃ (M=Ti, and Sn) for different pressure. The computational method is based on the pseudo-potential plane wave method (PP-PW). The exchange-correlation energy is described in the generalized gradient approximation (GGA). The calculated equilibrium lattice parameters are in reasonable agreement with the available experimental data. This work shows that the perovskites SrTiO₃, and SrSnO₃ are mechanically stable and present an indirect band gaps at the Fermi level. Applied pressure does not change the shape of the total valence electronic charge density and most of the electronic charge density is shifted toward O atom. Furthermore, in order to understand the optical properties of SrMO₃, the dielectric function, absorption coefficient, optical reflectivity, refractive index, extinction coefficient and electron energy-loss are calculated for radiation up to 80 eV. The enhancement of pressure decreases the dielectric function and refractive indices of SrTiO₃ and SrSnO₃.     

Theoretical Study of Structural,Electronic, Optical,and Elastic Properties of KLiX (X: S,Se, and Te) under Hydrostatic Pressure: A Pseudo Potential Plane Wave (PP-PW) Contribution

Crystallography Reports - We have studied structural, electronic, optical, and elastic properties of KLiX under pressure using the Density Functional Theory (DFT) within the Generalized Gradient...     

Exploring structure and dynamics of the diaquotriamminezinc(II) complex by QM/MM MD simulation

The structural and dynamical properties of the cis-(O-Zn-O angle approximately 90 degrees) and trans-(O-Zn-O angle approximately 180 degrees) isomers of the model diaquotriamminezinc(II) complex in aqueous solution have been evaluated using the hybrid quantum mechanical/molecular mechanical molecular dynamics simulation approach at ab initio Hartree-Fock level. In both complexes, the first hydration shell contains five ligands (two water and three ammonia molecules) arranged in a trigonal bipyramidal geometry. In the metastable cis-isomer two different bond lengths of 2.34 and 2.13 A are observed for the Zn-Oax and Zn-Oeq bonds, respectively. The trans-isomer shows the maximum of the Zn-O distance at 2.26 A. The Zn-N bond distances in both cases are approximately 2.12 A. A geometrical transformation of the cis-isomer into the trans-isomer was observed after 11.5 ps of simulation, and the trans-isomer then remained stable throughout the whole simulation time of 30 ps. A comparative study for both isomers has been performed in terms of radial distribution functions, coordination number distributions, angular distribution functions, tilt and theta angle distributions, ligands' mean residence time, ion-ligand stretching frequencies, and the vibrational and librational motions of water ligands. The results are compared with the data for the previously studied zinc-monoamine and -diamine complexes.     

Stability of different zinc(II)-diamine complexes in aqueous solution with respect to structure and dynamics: a QM/MM MD study

In the context of our detailed study of the chemical behavior of aquo- and ammine-Zn(II) complexes, ab initio quantum mechanical/molecular mechanical (QM/MM) molecular dynamics (MD) simulations were performed at the Hartree-Fock (HF) level for the zinc(II)-diamine complexes in aqueous solution. The initial structures of cis and trans isomers of the tetraaquodiamminezinc(II) complex were found to transform into the triaquodiamminezinc(II) complex by releasing one water ligand after approximately 6 and approximately 22 ps of simulation time, respectively. The structural and dynamical properties of these three zinc complexes, i.e., cis-[Zn(NH3)2(H2O)4]2+, trans-[Zn(NH3)2(H2O)4]2+, and [Zn(NH3)2(H2O)3]2+, were analyzed in terms of radial distribution functions (RDF), coordination number distributions (CND), angular distribution functions (ADF), tilt and theta angle distributions, ligands' mean residence times (MRTs), and ion-ligand stretching frequencies. One considerably elongated Zn-O bond of 2.43 A was observed in the case of the cis isomer for one of the water ligands located in the trans position to an ammonia ligand. In the trans isomer the average Zn-O bond length was observed to be 2.23 A, while in the triaquodiamminezinc(II) complex two distinct Zn-O bonds, namely 2.12 A for the ligands in the trigonal plane and 2.26 A for axial water molecules, were observed. As both of the octahedral isomers are transformed into the pentacoordinated structure within the picosecond range, they might be regarded as "metastable species or intermediates", while the triaquodiamminezinc(II) complex is the most stable species of the zinc(II)-diamine complex in aqueous solution.     

Theoretical prediction of the structural,elastic, electronic and thermodynamic properties of V3M (M = Si,Ge and Sn) compounds

Density functional theory (DFT), is used in our calculations to study the V₃M (M = Si, Ge and Sn) compounds, we are found that V₃Sn compound is mechanically unstable because of a negative C₄₄ = −19.41 GPa. For each of these compounds considered, the lowest energy structure is found to have the lowest N(E_f) value. Also there is a strong interaction between V and V, the interaction between M (M = Si, Ge, Sn) and V (M and M) is negative, not including Si [Sn]. In phonon density of states PDOS, the element contributions varies from lighter (high frequency) to heaviest (low frequency).     

Study of the structural,elastic, electronic and optical properties of lead free halide double perovskites Cs2AgBiX6(X = Br,Cl)

The lead free halides double perovskites show a particular interest in the conception of perovskites solar cells. We predicted the lattice constant and the atomic Wycko position of these lead free halide double perovskites Cs₂AgBiX₆ (X?=?Br, Cl) under pressure effect. The alloying ability of crystal, elastic constants and related parameters, electronic and optical properties have been studied using pseudo potential plane wave method based on the density functional theory. The investigated lead free halide double perovskites Cs₂AgBiX₆ (X?=?Br, Cl) show a weaker resistance to compression along the a-axis. This result also proves the existence of a directional bonding between atoms and a weaker resistance to compression along the a-axis The band structure indicates that Cs₂AgBiX(X?=?Br, Cl) are X–L indirect gap semiconductors. Our computed bulk modulus and its pressure derivative of double perovskites Cs₂AgBiX₆ (X?=?Br, Cl) are predictions. The calculated elastic constants of Cs₂AgBiX₆ (X?=?Br, Cl) at equilibrium and under pressure effect are predictions.