Working group report: Neutrino and astroparticle physics

This is the report of neutrino and astroparticle physics working group at WHEPP-7. Discussions and work on CP violation in long baseline neutrino experiments, ultra high energy neutrinos, supernova neutrinos and water Cerenkov detectors are discussed.     

Ab initio study of the electronic structures and conduction properties of some novel low band-gap donor-acceptor polymers

The results of the electronic structures and conduction properties of four novel donor-acceptor polymers based on polysilole, obtained on the basis of ab initio Hartree-Fock crystal orbital method using their optimized geometries, are reported. The repeat unit of these polymers consists of bicyclopentadisilole unit bridged by an electron-accepting group Y(Y=CCH₂ in PSICH, CO in PSICF, CCF₂ and CC(CN)₂ in PSICN). All the polymers on the basis of their geometries and π-bond order values are found to have benzenoid-type electronic structures. Comparison of the important electronic properties such as ionization potential, electron affinity and band-gap of these polymers indicates PSICN to be the best candidate for intrinsic conductivity and reductive (n-) doping while PSICH is predicted to be the best candidate for oxidative (p-) doping. All these polymers are estimated to have band-gap values ranging between 1 and 2 eV. The low band-gap values of these polymers are rationalised on the basis of the patterns of their frontier orbitals.     

Utilization of CS2 as a source of C1 chemistry for the generation of methyldithioformate

Insertion of CS(2) into the Ru-H bond of cis-[(dppe)(2)Ru(H)(2)] takes place to afford the hydride dithioformate complex trans-[(dppe)(2)Ru(H)(SC(S)H)]. The hydride dithioformate complex reacts under very mild conditions with MeX (X = OTf, I) to give the hydride methyldithioformate derivative trans-[(dppe)(2)Ru(H)(SC(SMe)H)][X]. Three different pathways have been found to cleave off the ester moiety from the metal complex. A method to recover the ruthenium starting material upon elimination of the methyldithioformate is presented. This is a novel case of C(1) chemistry using carbon disulfide.     

Evidence for Multiple Binding Modes in the Initial Contact Between SARS-CoV-2 Spike S1 Protein and Cell Surface Glycans**

Infection of host cells by SARS-CoV-2 begins with recognition by the virus S (spike) protein of cell surface heparan sulfate (HS), tethering the virus to the extracellular matrix environment, and causing the subunit S1-RBD to undergo a conformational change into the ‘open’ conformation. These two events promote the binding of S1-RBD to the angiotensin converting enzyme 2 (ACE2) receptor, a preliminary step toward viral-cell membrane fusion. Combining ligand-based NMR spectroscopy with molecular dynamics, oligosaccharide analogues were used to explore the interactions between S1-RBD of SARS CoV-2 and HS, revealing several low-specificity binding modes and previously unidentified potential sites for the binding of extended HS polysaccharide chains. The evidence for multiple binding modes also suggest that highly specific inhibitors will not be optimal against protein S but, rather, diverse HS-based structures, characterized by high affinity and including multi-valent compounds, may be required.     

Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath

The relative importance of individual microbial pathways in nitrous oxide (N(2)O) production is not well known. The intramolecular distribution of (15)N in N(2)O provides a basis for distinguishing biological pathways. Concentrated cell suspensions of Methylococcus capsulatus Bath and Nitrosomonas europaea were used to investigate the site preference of N(2)O by microbial processes during nitrification. The average site preference of N(2)O formed during hydroxylamine oxidation by M. capsulatus Bath (5.5 +/- 3.5 per thousand) and N. europaea (-2.3 +/- 1.9 per thousand) and nitrite reduction by N. europaea (-8.3 +/- 3.6 per thousand) differed significantly (ANOVA, f((2,35)) = 247.9, p = 0). These results demonstrate that the mechanisms for hydroxylamine oxidation are distinct in M. capsulatus Bath and N. europaea. The average delta(18)O-N(2)O values of N(2)O formed during hydroxylamine oxidation for M. capsulatus Bath (53.1 +/- 2.9 per thousand) and N. europaea (-23.4 +/- 7.2 per thousand) and nitrite reduction by N. europaea (4.6 +/- 1.4 per thousand) were significantly different (ANOVA, f((2,35)) = 279.98, p = 0). Although the nitrogen isotope value of the substrate, hydroxylamine, was similar in both cultures, the observed fractionation (delta(15)N) associated with N(2)O production via hydroxylamine oxidation by M. capsulatus Bath and N. europaea (-2.3 and 26.0 per thousand, respectively) provided evidence that differences in isotopic fractionation were associated with these two organisms. The site preferences in this study are the first measured values for isolated microbial processes. The differences in site preference are significant and indicate that isotopomers provide a basis for apportioning biological processes producing N(2)O.     

Novel double insertion of carbon disulfide into two Ru-H bonds of [(dppm)(2)Ru(H)(2)] (dppm = Ph(2)PCH(2)PPh(2)): synthesis and crystal structure of a methanedithiolate complex

Addition of excess carbon disulfide to cis/trans-[(dppm)(2)Ru(H)(2)] results in the methanedithiolate complex [(dppm)(2)Ru(eta(2)-S(2)CH(2))] 4 via the intermediacy of cis-[(dppm)(2)Ru(H)(SC(S)H)] 2. The X-ray crystal structure of this species has been determined.     

Provably stable and time‐accurate extensions of Runge–Kutta schemes for CFD computations on moving grids

Extending fixed‐grid time integration schemes for unsteady CFD applications to moving grids, while formally preserving their numerical stability and time accuracy properties, is a nontrivial task. A general computational framework for constructing stability‐preserving ALE extensions of Eulerian multistep time integration schemes can be found in the literature. A complementary framework for designing accuracy‐preserving ALE extensions of such schemes is also available. However, the application of neither of these two computational frameworks to a multistage method such as a Runge–Kutta (RK) scheme is straightforward. Yet, the RK methods are an important family of explicit and implicit schemes for the approximation of solutions of ordinary differential equations in general and a popular one in CFD applications. This paper presents a methodology for filling this gap. It also applies it to the design of ALE extensions of fixed‐grid explicit and implicit second‐order time‐accurate RK (RK2) methods. To this end, it presents the discrete geometric conservation law associated with ALE RK2 schemes and a method for enforcing it. It also proves, in the context of the nonlinear scalar conservation law, that satisfying this discrete geometric conservation law is a necessary and sufficient condition for a proposed ALE extension of an RK2 scheme to preserve on moving grids the nonlinear stability properties of its fixed‐grid counterpart. All theoretical findings reported in this paper are illustrated with the ALE solution of inviscid and viscous unsteady, nonlinear flow problems associated with vibrations of the AGARD Wing 445.6. Copyright © 2011 John Wiley & Sons, Ltd.     

Acrylonitrile Copolymers Using Cobalt Acetylacetonate Triethylaluminum Initiator System. IV. Copolymerization with Styrene

The copolymerization of acrylonitrile with styrene was studied using homogeneous Ziegler-Natta initiator containing cobalt acetylacetonate and triethylaluminum in benzene at 50°C. The overall rate of polymerization shows an interesting dependence on triethylaluminum, monomer, and initiator concentrations. The overall activation energy for the polymerization was found to be 10 kcal/mol. The polymerization was susceptible to inhibition by added hydroquinone. These observations are explained based on a mechanism wherein acrylonitrile competes for complexation with both the catalyst sites and the Lewis acid. The catalyst sites appear to possess both coordinate anionic and free radical characteristics.