An immuno-chemo-proteomics method for drug target deconvolution

Chemical proteomics is an emerging technique for drug target deconvolution and profiling the toxicity of known drugs. With the use of this technique, the specificity of a small molecule inhibitor toward its potential targets can be characterized and information thus obtained can be used in optimizing lead compounds. Most commonly, small molecules are immobilized on solid supports and used as affinity chromatography resins to bind targets. However, it is difficult to evaluate the effect of immobilization on the affinity of the compounds to their targets. Here, we describe the development and application of a soluble probe where a small molecule was coupled with a peptide epitope which was used to affinity isolate binding proteins from cell lysate. The soluble probe allowed direct verification that the compound after coupling with peptide epitope retained its binding characteristics. The PKC-alpha inhibitor Bisindolylmaleimide-III was coupled with a peptide containing the FLAG epitope. Following incubation with cellular lysates, the compound and associated proteins were affinity isolated using anti-FLAG antibody beads. Using this approach, we identified the known Bisindolylmaleimide-III targets, PKC-alpha, GSK3-beta, CaMKII, adenosine kinase, CDK2, and quinine reductase type 2, as well as previously unidentified targets PKAC-alpha, prohibitin, VDAC and heme binding proteins. This method was directly compared to the solid-phase method (small molecule was immobilized to a solid support) providing an orthogonal strategy to aid in target deconvolution and help to eliminate false positives originating from nonspecific binding of the proteins to the matrix.     

藤稔葡萄花发育相关基因启动子的克隆及功能分析

采用基于热不对称交错式PCR的基因组步移法,从藤稔葡萄(Vitis vinifera×V.labrusca‘Fujiminori’)的基因组总DNA中扩增花发育相关基因FT、FLC、AP3和AG的启动子上游序列片段,并通过序列分析及PlantCARE在线预测对FT、FLC和AP3启动子片段的序列及顺式调控作用元件和功能进行了分析.扩增结果表明:AG的第1轮扩增产物无明显条带,第2轮扩增产物条带弥散,不能用于序列分析及顺式调控作用元件和功能分析;FT、FLC和AP3基因2轮扩增产物均有特异条带,FT、FLC和AP3启动子序列的实际长度分别为1 470、1 698和1 061 bp,GenBank登录号分别为HM192806、HM192805和HM192804.PlantCARE在线预测结果表明:FT、FLC和AP3启动子片段中均含有TATA-box、CAAT-box等启动子的特异表达元件及光响应元件、真菌刺激响应元件、MYB结合位点等多个顺式调控作用元件,共同受真菌刺激、MYB和光等因素的调控;FT、FLC和AP3均可能在花的分生组织中表达,且FT和AP3还可能在胚乳中表达.根据研究结果推测:FT、FLC和AP3基因的启动子序列片段中均存在多种诱导响应元件,可能均为诱导型启动子.     

六种重金属离子胁迫诱导鱼类细胞凋亡的研究

以草鱼（Ctenopharyngodon idellus）ZC7901细胞为研究模型,选用六种重金属离子进行胁迫诱导鱼类细胞凋亡试验.结果显示,在Cd²⁺、Cr⁶⁺、Hg²⁺、Cu²⁺、As⁵⁺、Pb²⁺的胁迫作用下,ZC7901细胞均出现了明显的染色质凝集、趋边化、形成凋亡小体等凋亡形态特征,核酸电泳显示DNA发生特异降解而呈现电泳阶梯,用末端脱氧核糖核酸转移酶介导的dUTP切口末端标记（TUNEL）法,检测到DNA的3′-OH断端均被原位特异标记,表明六种重金属离子均能诱导鱼类细胞发生典型的凋亡.     

Cyclic heptapeptides from the soil-derived fungus Clonostachys rosea

Three new cyclic heptapeptides (1–3) together with three known compounds (4–6) were isolated from a solid rice culture of the soil-derived fungus Clonostachys rosea. Fermentation of the fungus on white beans instead of rice afforded a new γ-lactam (7) and a known γ-lactone (8) that were not detected in the former extracts. The structures of the new compounds were elucidated on the basis of 1D and 2D NMR spectra as well as by HRESIMS data. Compounds 1 and 4 exhibited significant cytotoxicity against the L5178Y mouse lymphoma cell line with IC₅₀ values of 4.1 and 0.1 µM, respectively. Compound 4 also displayed cytotoxicity against the A2780 human ovarian cancer cell line with an IC₅₀ value of 3.5 µM. The preliminary structure-activity relationships are discussed.     

核酸药物及其给药系统用于炎症性肠病治疗的研究进展

炎症性肠病是一种常见的免疫功能紊乱所致慢性顽固性胃肠道炎性疾病,现有的治疗手段难以根治。随着炎症性肠病分子机制研究的不断深入,在基因水平上应用核酸药物及其给药系统,对炎症性肠病发挥的独特治疗作用,已受到越来越多的关注, 并取得一定进展。本文简介炎症性肠病的发病机制,综述近年来核酸药物及其给药系统用于炎症性肠病治疗的研究进展。     

重组胸腺素α1的纯化及活性

将胸腺素α1基因4串体克隆于pThioHisA融合表达载体(pThioHisA-Tα1④),转化大肠杆菌TOP10。在IPTG诱导下,融合蛋白得到了高效表达。SDS-PAGE分析确定诱导表达的融合蛋白占菌体总蛋白的40%,且表达的融合蛋白主要以可溶形式存在。把用离子交换层析纯化出的目的蛋白进行CNBr化学裂解,经简单的离子交换层析可纯化出胸腺素α1单体,HPLC鉴定胸腺素α1的纯度达98%。利用3H-TdR进行生物活性测定,证实融合蛋白和胸腺素α1单体均具有在致有丝分裂原ConA存在的条件下,刺激小鼠脾淋巴细胞分裂增殖的能力,与化学合成的胸腺素α1相比具有相似的生物活性。     

有丝分裂激酶Aurora B的研究进展

真核生物细胞通过有丝分裂将遗传物质均等地分配到两个子细胞中,从而维持基因组的稳定性。有丝分裂的每一环节都需要精准而细致的调控,这依赖于一系列调节机制,尤其需要多个相关激酶的共同协调。Aurora B是一个关键的有丝分裂调控激酶,伴随有丝分裂的进行,其先后在染色体臂、内着丝粒、中央纺锤体、中体上动态分布。与其高度时空动态性相一致的是,Aurora B在有丝分裂的多个环节,如姐妹染色体粘连、动粒微管连接、纺锤体检验点和胞质分裂过程中都发挥着一系列重要功能。本文将概述近年来Aurora B激酶功能与调控方面的研究进展。     

水稻对褐飞虱抗性相关蛋白的双向电泳分析

以药用野生稻 (Oryzaofficinalis)的转育后代B5 (高抗褐飞虱 (NilaparvatalugensSt l) )与感虫品种明恢 6 3(OryzasativaL .)为亲本 ,构建了一个重组自交系群体。通过抗褐飞虱鉴定 ,筛选出极端抗虫株系和极端感虫株系 ,运用分群分析法 (bulkedsegregantanalysis ,BSA)分别建成了极端抗虫集团 (resistantbulk)和极端感虫集团 (susceptiblebulk)的蛋白质池。利用双向电泳技术 ,分别分析了极端抗虫集团和极端感虫集团受虫害与未受虫害的秧苗蛋白质的变化。结果发现 ,虫害 48h后 ,感虫集团的一个分子量为 40kD的蛋白质P40 (pI=6 .3)的表达明显减弱甚至消失 ,而在抗虫集团中 ,P40的表达未受影响。与褐飞虱为害后抗虫株系和感虫株系不同的生理反应相联系 ,推测P40与水稻受褐飞虱虫害后引起的应答反应相关     

一个新型耐热普鲁兰酶的结构与功能

新型普鲁兰酶的研究对于普鲁兰酶制剂的国产化、打破国外垄断具有非常重要的意义。从我国云南腾冲地区轮马热泉的淤泥中分离获得了一株耐热普鲁兰酶产生菌LM 18-11,经16S rDNA序列系统进化树分析,确定该菌为厌氧芽胞杆菌Anoxybacillus属种,并从中克隆获得了耐热普鲁兰酶的编码基因,该酶在55℃-60℃、pH 5.6-6.4的范围内具有最大的反应活性。此外,该酶具有较好的热稳定性,在60℃下处理48 h,仍可保持50%以上的活力;动力学分析该酶的Vmax和Km分别为750 U/mg和1.47 mg/mL,是目前文献报道中比活力最高的耐热普鲁兰酶。同时还对该酶进行了晶体结构分析,结果显示该酶具有?-淀粉酶家族中典型的结构,在N端具有一个特殊的底物结合域,该结构域的缺失导致比活力和底物结合力都有相应降低,Vmax和Km分别为324 U/mg和1.95 mg/mL。同时,将该普鲁兰酶编码基因导入枯草芽胞杆菌中,在P43启动子的控制下,普鲁兰酶基因获得了高效表达,胞外酶活可达42 U/mL,相比初始菌种,表达活力提高40倍以上。研究表明该普鲁兰酶具有很好的应用前景。     

6—DMAP和胚胎干细胞代数对异种重构卵体外发育的影响（简报）

The development of reconstructed oocytes and the survival rate of cloned animal were affected by many factors during nuclear transfer. The genetic constitution and the genetic state of donor nucleus were proposed to be primary factors, which affected the survival rate of cloned animal. In addition, the survival rate of cloned animal might be influenced by nuclear transfer technique itself and passages of donor cells as well as the activation methods of oocytes. We reconstructed oocytes with outbreeding Kunming albino mouse ES cells and enucleated rabbit oocytes, and analyzed the effects of the passages of ES cells and 6-DMAP on the development of interspecific reconstructed oocytes. The interspecific reconstructed ES-rabbit oocytes were activated either by combined two set electric pulses and 6-DMAP or by two set electric pulses alone. The rate of cleavage was significantly higher for the group (86.2%) treated with 6-DMAP than the group (64.2%, P < 0.05) treated with electric pulses only, and the rate of blastocysts was 17.0% and 13.4% respectively, which were not significantly different between two groups. When ES cells that had been passed for 24 and 14 generations were used as donors, the cleavage rates of the reconstructed oocytes were 88.5% and 82.1%, respectively (P > 0.05), and the rates of blastolation were 16.7% and 15.4%, respectively (P > 0.05). The results show that 6-DMAP increases the cleavage rate of reconstructed oocytes derived from ES cells, and affects slightly the developmental rate of blastocysts. There are no differences when high passage and low passage ES cells are used as nuclear donors.