Effect of Nitrogen Supply on the Kinetics and Regulation of Nitrate Assimilation in Chlamydomonas reinhardtii Dangeard

Concentration-dependent NO     

The complex nature of progenetic species — examples from Mesozoic ammonites

Several examples of progenetic species among Mesozoic ammonites are investigated. The ammonites are Middle Jurassic kosmoceratids, Upper Jurassic oppeliids, and Upper Cretaceous scaphites. As assessed through outgroup comparison, the progenetic species in each of these examples is characterized by small size at maturity and the presence of morphological features typical of those of the juveniles of more primitive species. However, in none of these examples is the progenetic species a duplicate form of the juvenile stage of more primitive species. There are at least three kinds of features of progenetic species that differ from those of the juveniles of more primitive species: (1) symplesiomorphous features associated with maturation, (2) unique features whose presence is not clearly related to progenetic processes, and (3) unique features that may represent epigenetic outgrowths of juvenile morphology. This novel combination of juvenile. adult. and unique features may endow progenetic species with the evolutionary potential to play a role in the origin of higher taxa. □ Progenesis, heterochrony, Ammon-oidea. Jurassic, Cretaceous.     

Truncation of class IV chitinases from Arabidopsis by secreted fungal proteases

Plant class IV chitinases have a small amino‐terminal chitin‐binding domain and a larger chitinase domain, and are involved in plant defence against fungal infection. Our previous work on the chitinases ChitA and ChitB from the model monocotyledon Zea mays showed that the chitin‐binding domain is removed by secreted fungal proteases called fungalysins. In this article, we extend this work to dicotyledons. The effects of fungalysin‐like proteases on four class IV chitinases from the model dicotyledon Arabidopsis thaliana were analysed. Four Arabidopsis chitinases were heterologously expressed in Pichia pastoris, purified and shown to have chitinase activity against a chitohexaose (dp6) substrate. The incubation of these four chitinases with Fv‐cmp, a fungalysin protease secreted by Fusarium verticillioides, resulted in the truncation of AtchitIV3 and AtchitIV5. Moreover, incubation with secreted proteins from Alternaria brassicae, a pathogen of A. thaliana and brassica crops, also led to a similar truncation of AtchitIV3 and AtchitIV4. Our finding that class IV chitinases from both dicotyledons (A. thaliana) and monocotyledons (Z. mays) are truncated by proteases secreted by specialized pathogens of each plant suggests that this may be a general mechanism of plant–fungal pathogenicity.     

Non-lethal effects of predation in birds

Predators can affect individual fitness and population and community processes through lethal effects (direct consumption or ‘density’ effects), where prey is consumed, or through non‐lethal effects (trait‐mediated effects or interactions), where behavioural compensation to predation risk occurs, such as animals avoiding areas of high predation risk. Studies of invertebrates, fish and amphibians have shown that non‐lethal effects may be larger than lethal effects in determining the behaviour, condition, density and distribution of animals over a range of trophic levels. Although non‐lethal effects have been well described in the behavioural ecology of birds (and also mammals) within the context of anti‐predation behaviour, their role relative to lethal effects is probably underestimated. Birds show many behavioural and physiological changes to reduce direct mortality from predation and these are likely to have negative effects on other aspects of their fitness and population dynamics, as well as affecting the ecology of their own prey and their predators. As a consequence, the effects of predation in birds are best measured by trade‐offs between maximizing instantaneous survival in the presence of predators and acquiring or maintaining resources for long‐term survival or reproduction. Because avoiding predation imposes foraging costs, and foraging behaviour is relatively easy to measure in birds, the foraging–predation risk trade‐off is probably an effective framework for understanding the importance of non‐lethal effects, and so the population and community effects of predation risk in birds and other animals. Using a trade‐off approach allows us to predict better how changes in predator density will impact on population and community dynamics, and how animals perceive and respond to predation risk, when non‐lethal effects decouple the relationship between predator density and direct mortality rate. The trade‐off approach also allows us to identify where predation risk is structuring communities because of avoidance of predators, even when this results in no observable direct mortality rate.     

Revealing the hidden complexities of mtDNA inheritance

Mitochondrial DNA (mtDNA) is a pivotal tool in molecular ecology, evolutionary and population genetics. The power of mtDNA analyses derives from a relatively high mutation rate and the apparent simplicity of mitochondrial inheritance (maternal, without recombination), which has simplified modelling population history compared to the analysis of nuclear DNA. However, in biology things are seldom simple, and advances in DNA sequencing and polymorphism detection technology have documented a growing list of exceptions to the central tenets of mitochondrial inheritance, with paternal leakage, heteroplasmy and recombination now all documented in multiple systems. The presence of paternal leakage, recombination and heteroplasmy can have substantial impact on analyses based on mtDNA, affecting phylogenetic and population genetic analyses, estimates of the coalescent and the myriad of other parameters that are dependent on such estimates. Here, we review our understanding of mtDNA inheritance, discuss how recent findings mean that established ideas may need to be re‐evaluated, and we assess the implications of these new‐found complications for molecular ecologists who have relied for decades on the assumption of a simpler mode of inheritance. We show how it is possible to account for recombination and heteroplasmy in evolutionary and population analyses, but that accurate estimates of the frequencies of biparental inheritance and recombination are needed. We also suggest how nonclonal inheritance of mtDNA could be exploited, to increase the ways in which mtDNA can be used in analyses.     

Keratinocytes Suppress TRP‐1 Expression and Reduce Cell Number of Co‐cultured Melanocytes – Implications For Grafting of Patients with Vitiligo

A pilot study for grafting of patients with vitiligo using cultured epithelial autografts containing melanocytes gave disappointing clinical results, with pigmentation achieved in only one out of five patients. Irrespective of the fate of melanocytes grafted back onto the patients, we experienced problems in identifying melanocytes within these well‐integrated keratinocyte sheets. This led us to explore the fate of these cells within these sheets in vitro and to seek to improve their number and function within the sheets. We report that the introduction of a fibroblast feeder layer can improve melanocyte number within melanocyte/keratinocyte co‐cultures initially, but at very high keratinocyte density, there is a marked loss of melanocytes (as detected by staining for S100). Additionally, we found that keratinocytes not only down‐regulate melanocyte number, but also pigmentary function; thus, it was possible to identify melanocytes that were S100 positive but tyrosinase‐related protein‐1 (TRP‐1) negative in confluent well‐integrated keratinocyte sheets. In summary, our data suggest that keratinocytes at high density initially suppress melanocyte pigmentation (as evidenced by a lack of TRP‐1 expression) and then cause a physical loss of melanocytes. The introduction of a fibroblast feeder layer can help maintain melanocyte number while keratinocytes are subconfluent, but fails to oppose the inhibitory influence of the keratinocytes on melanocyte TRP‐1 expression.     

A demographic approach to evaluating the impact of stressors on bumble bee colonies

1. Natural and anthropogenic stressors threaten the sustainability of bumble bees and evaluating their impact is essential to the stewardship of these valuable pollinators. Demographic modelling provides a framework for testing hypotheses about the impacts of stressors, but it has not previously been applied to bumble bees. 2. I therefore formulated a demographic model for a bumble bee colony and then quantified the impact of two stressors, pesticide exposure and spider predation, by perturbing it with their known effects. 3. By simulating a laboratory exposure of Bombus terrestris L. to dietary imidacloprid (a neonicotinoid insecticide), I tested whether the observed colony decline was explained solely by a toxic effect on the fecundity of the foundress queen. By simulating field observations of B. terricola Kirby, I tested whether predation by crab spiders reduced colony fitness sufficiently to provide an adaptive explanation for avoidance behaviours seen when bumble bees encounter spiders. 4. In B. terrestris, a dose‐appropriate decrease in fecundity predicted the observed colony decline, which implicates this as a principal mechanism of toxicity. In B. terricola, doubling the rate of spider predation reduced a colony's production of new queens by 11%, which implies that spider avoidance is highly adaptive. 5. These analyses illustrate the utility of demographic modelling for quantifying the impacts of stressors on bumble bees. In the future, models of this type could be used to investigate a wider range of stressors and to produce thereby knowledge and tools useful for safeguarding bumble bees and the pollination services that they provide.     

A wheat canopy model for use in disease management decision support systems

A model is described which predicts those aspects of wheat canopy development and growth which are influential in determining the development of epidemics of foliar pathogens, the efficacy of foliar applied fungicides and the impact of disease on yield; specifically the emergence, expansion and senescence of upper culm leaves in relation to anthesis date. This focus on upper leaves allowed prediction of leaf emergence dates by reference to anthesis, rather than sowing. This avoided the step changes in flag leaf emergence date with temperature, reported with earlier models, without the additional complexity of a stochastic approach. The model is designed to be coupled to models of foliar disease, where the primary effect on yield is via reduction in green canopy area and hence interception of photosynthetically active radiation. Mechanisms were incorporated to allow observations of crop development during the growing season to update state variables and adjust parameters affecting future predictions. The model was calibrated using experimental data, and validated against independent observations of crop development on four wheat cultivars across seven contrasting sites in the UK. Anthesis date and upper culm leaf emergence were always predicted within one week of their observed dates.     

Microstructure and mineralogy of the outer calcareous layer in the lower jaws of Cretaceous Tetragonitoidea and Desmoceratoidea (Ammonoidea)

Tanabe, K., Landman, N.H. & Kruta, I. 2011: Microstructure and mineralogy of the outer calcareous layer in the lower jaws of Cretaceous Tetragonitoidea and Desmoceratoidea (Ammonoidea). Lethaia, Vol. 45, pp. 191–199. Based on the differences in their relative size, overall shape, structure and the degree of development of an outer calcified covering, lower jaws of the Ammonoidea have been classified into four morphotypes: normal, anaptychus, aptychus and rhynchaptychus types. However, detailed microstructural and mineralogical comparison of these morphotypes has not yet been addressed. This article documents the results of SEM and XRD observations of the lower jaws of three Late Cretaceous ammonoid species belonging to the Tetragonitoidea (Anagaudryceras limatum) and Desmoceratoidea (Pachydiscus kamishakensis and Damesites aff. sugata), based on excellent material preserved in situ within the body chamber, and retaining an aragonitic shell wall. The lower jaws of the three species are assigned to an intermediate form between anaptychus and aptychus types for the first two species and the rhynchaptychus type for the third species. Their black, presumably originally chitinous outer lamella is wholly covered with a calcareous layer. The calcareous layer is composed of aragonite in D. aff. sugata and A. limatum, and calcite in P. kamishakensis. The microstructure of the outer calcareous layer differs among the three species, i.e. granular in A. limatum, spherulitic prismatic in D. sugata, and prismatic in P. kamishakensis, all of which can be distinguished from the lamellar and spongy structure of the outer‐paired calcitic plates of the typical aptychus‐type lower jaws in some Jurassic and Cretaceous Ammonitina and Ancyloceratina. Our study suggests that most Jurassic and Cretaceous ammonoids possessed an outer calcareous layer in their lower jaws, although its mineralogy, microstructure and relative thickness vary among different taxa. □Ammonoidea, Cretaceous, Desmoceratoidea, lower jaw, microstructure, Tetragonitoidea.     

A Neuroethological Study of Display Behavior in the Lizard Anolis Carolinensis (Reptilia, Lacertilia, Iguanidae)

A behavior inventory and ethogram for display behavior, an atlasof the principal forebrain nuclei and fiber tracts, and microtechniquesfor stereotaxic surgery were developed in conjunction with astudy of forebrain involvement in the display behavior of Anoliscarolinensis In a behavior inventory of 100 units consistingof states and events, forty-seven were observed exclusivelyor frequently in social situations. An analysis of the effectsof forebrain lesions on two stereotyped displays indicated involvementof the striatal area of the basal forebrain in species-typical"challenge" displays that are characteristic of territorialencounters between adult conspecifics. "Assertive" displaysassociated with elevated behavioral arousal were not significantlyaffected Lesions confined to the dorsal ventricular ridge resultedin no significant deficits in either display type.