An atomic model of the outer layer of the bluetongue virus core derived from X-ray crystallography and electron cryomicroscopy

BACKGROUND: Bluetongue virus (BTV), which belongs to the Reoviridae family and orbivirus genus, is a non-enveloped, icosahedral, double-stranded RNA virus. Several protein layers enclose its genome; upon cell entry the outer layer is stripped away leaving a core, the surface of which is composed of VP7. The structure of the trimeric VP7 molecule has previously been determined using X-ray crystallography. The articulated VP7 subunit consists of two domains, one which is largely alpha-helical and the other, smaller domain, is a beta barrel with jelly-roll topology. The relative orientations of these two domains vary in different crystal forms. The structure of VP7 and the organizations of 780 subunits of this molecule in the core of virus is central to the assembly and function of BTV. RESULTS: A 23 A resolution map of the core, determined using electron cryomicroscopy (cryoEM) data, reveals that the 260 trimers of VP7 are organized on a rather precise T = 13 laevo icosahedral lattice, in accordance with the theory of quasi-equivalence. The VP7 layer occupies a shell that is between 260 A and 345 A from the centre of the core. Below this radius (230-260 A) lies the T = 1 layer of 120 molecules of VP3. By fitting the X-ray structure of an individual VP7 trimer onto the cryoEM BTV core structure, we have generated an atomic model of the VP7 layer of BTV. This demonstrates that one of the molecular structures seen in crystals of the isolated VP7 corresponds to the in vivo conformation of the molecule in the core. CONCLUSIONS: The beta-barrel domains of VP7 are external to the core and interact with protein in the outer layer of the mature virion. The lower, alpha-helical domains of VP7 interact with VP3 molecules which form the inner layer of the BTV core. Adjacent VP7 trimer-trimer interactions in the T = 13 layer are mediated principally through well-defined regions in the broader lower domains, to form a structure that conforms well with that expected from the theory of quasi-equivalence with no significant conformational changes within the individual trimers. The VP3 layer determines the particle size and forms a rather smooth surface upon which the two-dimensional lattice of VP7 trimers is laid down.     

Head injury mechanisms and the concept of preventive management: a review and critical synthesis

Recent advances in head injury research have produced a plethora of useful data coupled with a paucity of conceptual integration across the four ways in which this research is pursued. These research orientations are the epidemiological, biomechanical, basic neuroscientific, and clinicopathologic/therapeutic (including rehabilitation). This overview of the history and current state of the art assumes that biomechanics is the basic science of causation in head injury research and when fully integrated with its counterparts, physiology and pathology, it can serve to overcome our conceptual handicaps. A paradigm integrating biomechanics; into the sequence of preventive, protective, acute therapeutic, and rehabilitative interventions will be described as the concept of preventive management. From this we derive the hypothesized claim that the exact biomechanics and the physiopathologic response at the time of injury (at the macroscopic and microscopic levels) determine the sequence of so-called secondary effects that are conceived as the inexorable delayed manifestations of the primary events and concomitant boundary conditions. Knowledge of these events will enable accurate predictions of the natural history and outcome of head injuries from observations carried out in the early acute phase. Examples to test this claim will be given with particular reference to the two types of traumatic brain injury (TBI) phenomenologically associated with disturbances of consciousness, the onset of which can be either immediate or delayed. The current economics and availability of computational power provide a significant opportunity for the development of selected experimental, physical, and simulated models of head injury on the basis of which the complex neurovascular and nonneural cellular and fluid elements of the nervous system may be accurately modeled. This approach will significantly improve the efficiency and quality of the essential biological and clinical observations and model experiments required to validate the theoretical methods and their predictions.     

Thermal studies of Cr2O3 doped CaCO3-SiO2 (2∶1) system

Mixtures of CaCO₃SiO₂ in 21 molar ratio were subjected separated to thermal analysis with varying concentration of Cr₂O₃ (0.1 to 5%) as dopant. The activation energy (E _a) and enthalpy (H) shows a decreasing trend with 0.1 to 1% Cr₂O₃ and attains a minimum value with 1% dopant. 0.1 to 0.5% Cr₂O₃ helps in the formation of and C₂S, (Cement Chemistry notations, C = CaO, S = SiO₂) phases at 1400° C and above but 1% Cr₂O₃ stabilizes -C₂S phase along with a little free lime and CaCrO₄. A small quantity of CaCrO₄, Cr₂SiO₂ and -C₂S are also formed along with the major phases with 5% Cr₂O₃ indicating that Cr³⁺ can substitute both Ca²⁺ and Si⁴⁺ ions in the C₂S lattice.     

Quantification of response time in poly(vinyl alcohol)–metal complex thermochromic polymeric systems

Thermochromic poly(vinyl alcohol) (PVA)‐based material was synthesized and an extensive study of its thermochromic behavior with respect to response time was carried out. It was observed that it is possible to manipulate the response time by keeping control over chemical and physical parameters. The response time, which is the most important property of a smart material, has in this case been found to be very much influenced by rate of heat transfer into the material. Different compositions of the thermochromic material and their corresponding response time with respect to rate of heat transfer were studied and correlated. First, a theoretical equation was derived and later on it was experimentally verified to quantify the response time in PVA–metal complex‐based thermochromic systems. © 2006 Wiley Periodicals, Inc. J Appl Polym Sci 100: 4832–4834, 2006     

Epoxy‐montmorillonite clay nanocomposites: Synthesis and characterization

Nanocomposites of epoxy resin with montmorillonite clay were synthesized by swelling of different proportions of the clay in a diglycidyl ether of bisphenol‐A followed by in situ polymerization with aromatic diamine as a curing agent. The montmorillonite was modified with octadecylamine and made organophilic. The organoclay was found to be intercalated easily by incorporation of the epoxy precursor and the clay galleries were simultaneously expanded. However, Na‐montmorillonite clay could not be intercalated during the mixing or through the curing process. Curing temperature was found to provide a balance between the reaction rate of the epoxy precursor and the diffusion rate of the curing agent into the clay galleries. The cure kinetics were studied by differential scanning calorimetry. The exfoliation behavior of the organoclay system was investigated by X‐ray diffraction. Thermogravimetric analysis was used to determine the thermal stability, which was correlated with the ionic exchange between the organic species and the silicate layers. The morphology of the nanocomposites was evaluated by scanning electron microscopy. © 2004 Wiley Periodicals, Inc. J Appl Polym Sci 93: 2201–2210, 2004     

A selective reaction of polyhydroxy fullerene with cycloaliphatic epoxy resin in designing ether connected epoxy star utilizing fullerene as a molecular core

A novel ether connected epoxy star like polymer was synthesized by selective reaction of water soluble polyhydroxy fullerene (fullerenol) with a commercial grade cycloaliphatic epoxy resin (CY-230, Ciba Geigy) in heterogeneous medium at ambient alkaline condition using tetrabutylammonium hydroxide as phase transfer catalyst. The reaction went well in such conditions and the hydroxy groups of fullerenol underwent selective nucleophilic addition reaction with polar carbonyl groups of the epoxy resin with the formation of a hemiketal. The progress of the reaction was monitored by FTIR analysis of the product formed. The disappearance of characteristic FTIR bands of fullerenol (at 1593.2, 1381.2, and 1068 cm⁻¹) and the typical carbonyl peak (at 1725 cm⁻¹) of parent epoxy resin and also changes of broad hydroxy peak (at 3431 cm⁻¹) of fullerenol into a sharp peak (at 3396.6 cm⁻¹, indicating reduced hydrophilicity) in the reaction product clearly demonstrated the chemical attachment of the epoxy units to the fullerene core. Multiple epoxy units (about 8-10) were attached to fullerene core. Non-reactivity of fullerenol towards DGEBA epoxy resin (LY 556 Ciba Geigy) in similar conditions further supports our result. The thermal properties of the product were influenced by the presence of fullerenol and exhibits higher thermal stability compared to parent epoxy. A probable reaction mechanism for the reaction has also been discussed.     

Crystallization kinetics of bulk amorphous Se80−xSbxTe20

Crystallization kinetics of the Se_80–x Sb _x Te₂₀ (0x9) alloys have been studied using differential scanning calorimetry. The activation energies for the glass transition and that for crystallization have been determined from the heating rate dependence of the glass transition temperature and the peak crystallization temperature. The results have been analysed using the modified Kissinger's and Matusita's equations for the non-isothermal crystallization of materials. The variation of glass transition temperature with composition suggests that a small amount of Sb ( 4 at %) leads to an increase in the chain length of Se-Te, whereas further increase in Sb atomic per cent increases the number of Se-Te chains in the alloys.