The HaLoop approach to large-scale iterative data analysis

The growing demand for large-scale data mining and data analysis applications has led both industry and academia to design new types of highly scalable data-intensive computing platforms. MapReduce has enjoyed particular success. However, MapReduce lacks built-in support for iterative programs, which arise naturally in many applications including data mining, web ranking, graph analysis, and model fitting. This paper (This is an extended version of the VLDB 2010 paper “HaLoop: Efficient Iterative Data Processing on Large Clusters” PVLDB 3(1):285–296, 2010.) presents HaLoop, a modified version of the Hadoop MapReduce framework, that is designed to serve these applications. HaLoop allows iterative applications to be assembled from existing Hadoop programs without modification, and significantly improves their efficiency by providing inter-iteration caching mechanisms and a loop-aware scheduler to exploit these caches. HaLoop retains the fault-tolerance properties of MapReduce through automatic cache recovery and task re-execution. We evaluated HaLoop on a variety of real applications and real datasets. Compared with Hadoop, on average, HaLoop improved runtimes by a factor of 1.85 and shuffled only 4 % as much data between mappers and reducers in the applications that we tested.     

The Swedish approach to research and development in fire protection

Current Research Activities

The Swedish approach to research and development in fire protection     

(S)-Reutericyclin: Susceptibility Testing and In Vivo Effect on Murine Fecal Microbiome and Volatile Organic Compounds

We aimed to assess the in vitro antimicrobial activity and the in vivo effect on the murine fecal microbiome and volatile organic compound (VOC) profile of (S)-reutericyclin. The antimicrobial activity of (S)-reutericyclin was tested against Clostridium difficile, Listeria monocytogenes, Escherichia coli, Enterococcus faecium, Staphylococcus aureus, Staphylococcus (S.) epidermidis, Streptococcus agalactiae, Pseudomonas aeruginosa and Propionibacterium acnes. Reutericyclin or water were gavage fed to male BALBc mice for 7 weeks. Thereafter stool samples underwent 16S based microbiome analysis and VOC analysis by gas chromatography mass spectrometry (GC-MS). (S)-reutericyclin inhibited growth of S. epidermidis only. Oral (S)-reutericyclin treatment caused a trend towards reduced alpha diversity. Beta diversity was significantly influenced by reutericyclin. Linear discriminant analysis Effect Size (LEfSe) analysis showed an increase of Streptococcus and Muribaculum as well as a decrease of butyrate producing Ruminoclostridium, Roseburia and Eubacterium in the reutericyclin group. VOC analysis revealed significant increases of pentane and heptane and decreases of 2,3-butanedione and 2-heptanone in reutericyclin animals. The antimicrobial activity of (S)-reutericyclin differs from reports of (R)-reutericyclin with inhibitory effects on a multitude of Gram-positive bacteria reported in the literature. In vivo (S)-reutericyclin treatment led to a microbiome shift towards dysbiosis and distinct alterations of the fecal VOC profile.     

Analytical studies on the temperature distribution in spiral plate heat exchangers: Straightforward design formulae for efficiency and mean temperature difference

The temperature distribution in spiral plate heat exchangers has been calculated numerically to obtain the efficiency and the logarithmic mean temperature difference (LMTD) correction factors F as a function of the number of transfer units N, the number of turns n, and the heat capacity rate ratio C. It has been found that the LMTD correction factors, when plotted against the number of transfer units per turn N/n, fall approximately on a single curve. That curve for balanced countercurrent operation (C = −1) can be very closely represented by the simple formula F = (n/N)tanh(N/n). From that simple analytic representation of our numerical results it was concluded that a simpler physical model might exist to represent the overall behaviour of a spiral plate heat exchanger equally well. In fact, a countercurrent cascade of n cocurrent heat exchangers does result exactly in the above-mentioned formula for the LMTD correction factor. From that model the F-factors for other heat capacity rate ratios C (−1 < C 0) can also be calculated and they are in sufficient agreement with the numerical results.     

Gezielte Nutzung biologischer Systeme

Directed exploitation of biological systems . During the past few decades, our knowledge of molecular process responsible for genetics has increased dramatically. Discovery of the giant molecule deoxyribonucleic acid – abbreviated as DNA – as the carrier of genetic information heralded in a development which nowadays permits us to effect directed changes in the genetic material of an organism. Thus we can provide easily cultured microorganisms with genes which were previously located in a completely different genetic environment. This helps us to obtain high yields of proteins or other substances which were formerly very difficult to obtain. Higher organisms such as animals and plants can also undergo modification of their genetic equipment. This adds a new dimension to the breeding of such species. Above all, genetic engineering provides new insights into the enormously complex interplay of molecules which go to make up a living cell. The resulting understanding of life processes on a molecular level permits recognition of malfunction and therapy of the ensuring disease by new drugs. In addition to these positive aspects, genetic engineering provides scope for conducting experiments whose ethical implications demand very earnest consideration.     

Energieinformatik

Due to the increasing importance of producing and consuming energy more sustainably, Energy Informatics (EI) has evolved into a thriving research area within the CS/IS community. The article attempts to characterize this young and highly dynamic field of research by describing current EI research topics and methods and provides an outlook of how the field might evolve in the future. It is shown that two general research questions have received the most attention so far and are likely to dominate the EI research agenda in the coming years: How to leverage information and communication technology (ICT) to (1) improve energy efficiency, and (2) to integrate decentralized renewable energy sources into the power grid. Selected EI streams are reviewed, highlighting how the respective research questions are broken down into specific research projects and how EI researchers have made contributions based on their individual academic background.     

Infrared heated μ-blistering,a new fabrication technology for HARMST

Polymeric replication technologies such as injection moulding or hot-embossing have gained wide acceptance in the microtechnological community, microthermoforming of thin polymer foils, also called μ-blistering, still remains relatively unknown. Although the general potentials of the µ-blistering have already been pointed out, little work has been carried out addressing its capability for high aspect ratio microstructuring. In the scope of this work we therefore demonstrate the feasibility of μ-blistering to obtain aspect ratios for free standing structures of up to 7 within a process cycle time of <4 min. The presented processing technology uniquely combines manufacturing of macro-, micro- and even nanoscopic feature sizes in a single process.     

COMPUTER SIMULATION OF HYDRODEMETALLATION IN FIXED-BED REACTORS

An isothermal model for hydrodemetallation (HDM) of crude oils in catalytic fixed-bed reactors is proposed. This model involves a consecutive reaction mechanism, which is capable of accounting for particle deposit profiles with interior maxima. Consistent with the fact that HDM catalysts are conglomerates formed by precipitation, the porous catalyst itself is modeled as randomly overlapping spheres of equal size. The metal is deposited as growing metal sulfide crystallites on the inner surface of the catalyst. These crystallites originate from a certain number of randomly scattered nuclei and increase in size as the deposition proceeds. The random sphere model for the catalyst and the deposit provides the changes in the catalyst pore structure—local porosity and surface area.

The mass transport within the domain of the particle is due to restricted liquid diffusion, since the diameter of the metal bearing compound (porphyrin) and the intermediate are comparable to the pore size. The diffusion restrictions taken into account are the enhanced drag imposed on a molecule by adjacent pore walls and steric partitioning.

Since the deposition process is much slower than diffusion and reaction, the pseudo-steady-state assumption can be justified. The equations of conservation for mass are solved by orthogonal collocation on finite elements. Based on this solution technique a computer simulation program of HDM is designed that allows two modes of operation: constant temperature and constant conversion. The simulation program “SIMULA” is highly flexible with regard to reaction kinetics, catalyst structure, reactor design, and operating conditions. In comparison to a base case with uniform activity, the effect of intraparticle (radial) and bed (axial) activity profiles on the conversion rate is discussed. For the case investigated, a radial distribution of activity higher at the center of the particle than at the edge can increase catalyst life by 25%, but axial distribution was less successful.