High throughput drug screening by direct RNA profiling on DNA sensors

The feasibility of DNA microarray sensor technology as a routine technique of molecular pharmacology to perform high throughput drug screening and the advantages of directly labeled RNA for a high throughput experiment are presented in this paper. A novel, single-step direct chemical labeling method for DNA microarray target samples has been developed to reduce the sample amount, cost, time and error of the experiment by eliminating the need for enzyme mediated labeling. Reproducibility of the data for high throughput drug screening is demonstrated by monitoring differential gene expression of a set of 45 gene targets involved in the genotoxic stress response pathways.     

Lower rim 1,3-di{4-antipyrine}amide conjugate of calix[4]arene: synthesis, characterization, and selective recognition of Hg2+ and its sensitivity toward pyrimidine bases

The structurally characterized lower rim 1,3-di{4-antipyrine}amide conjugate of calix[4]arene (L) exhibits high selectivity toward Hg(2+) among other biologically important metal ions, viz., Na(+), K(+), Ca(2+), Mg(2+), Mn(2+), Fe(2+), Co(2+), Ni(2+), Cu(2+), Zn(2+), Cd(2+), Hg(2+), Pb(2+), and Ag(+) as studied by fluorescence, absorption, and ESI MS. L acts as a sensor for Hg(2+) by switch-off fluorescence and exhibits a lowest detectable concentration of 1.87 ± 0.1 ppm. The complex formed between L and Hg(2+) is found to be 1:1 on the basis of absorption and fluorescence titrations and was confirmed by ESI MS. The coordination features of the mercury complex of L were derived on the basis of DFT computations and found that the Hg(2+) is bound through an N(2)O(2) extending from both the arms to result in a distorted octahedral geometry with two vacant sites. The nanostructural features such as shape and size obtained using AFM and TEM distinguishes L from its Hg(2+) complex and were different from those of the simple mercuric perchlorate. L is also suited to sense pyrimidine bases by fluorescence quenching with a minimum detection limit of 1.15 ± 0.1 ppm in the case of cytosine. The nature of interaction of pyrimidine bases with L has been further studied by DFT computational calculations and found to have interactions through a hydrogen bonding and NH-π interaction between the host and the guest.     

On further application of r as a metric for validation of QSAR models

Validation is a crucial aspect for quantitative structure–activity relationship (QSAR) model development. External validation is considered, in general, as the most conclusive proof of predictive capacity of a QSAR model. In the absence of truly external data set, external validation is usually performed on test set compounds, which are members of the original data set but not used in model development exercise. In the case of small data sets, QSAR researchers experience problem in model development due to the fact that the developed models may be less reliable on account of the small number of training set compounds and such models may also show poor external predictability because the models may not have captured all necessary features required for the particular structure–activity relationships. The present paper attempts to show that ‘true r_(LOO)’ statistic calculated based on the model derived from the undivided data set with application of variable selection strategy at each cycle of leave‐one‐out (LOO) validation may reflect external validation characteristics of the developed model thus obviating the requirement of splitting of the data set into training and test sets. This approach may be helpful in the case of small data sets as it uses all available data for model development and validation thus making the resulting model more reliable. Copyright © 2009 John Wiley & Sons, Ltd.     

Halogen-containing tetrametallic aluminium alkoxides

New halogen-containing tetrametallic aluminium alkoxides of formula [Al{(mu-OEt)2AlMeCl}3] ( 2-cis; 2-trans), and [Al{(mu-OEt)2AlBr2}3] ( 4), have been synthesized by combining Al(OEt)3 and Me2AlCl (for 2) or EtAlBr2 (for 4). They were fully characterized by (1H, 27Al) NMR, IR, mp, elemental analysis, and single-crystal X-ray diffractometry. The chloride analogue of 4, [Al{(mu-OEt)2AlCl2}3] ( 3), prepared previously using a different route, was also prepared here by combining Al(OEt)3 and EtAlCl2.     

Temperature-dependent solvation dynamics of water in sodium bis(2-ethylhexyl)sulfosuccinate/isooctane reverse micelles

In this paper, for the first time, we report a detailed study of the temperature-dependent solvation dynamics of a probe fluorophore, coumarin-500, in AOT/isooctane reverse micelles (RMs) with varying degrees of hydration (w0) of 5, 10, and 20 at four different temperatures, 293, 313, 328, and 343 K. The average solvation time constant becomes faster with the increase in w0 values at a particular temperature. The solvation dynamics of a RM with a fixed w0 value also becomes faster with the increase in temperature. The observed temperature-induced faster solvation dynamics is associated with a transition of bound- to free-type water molecules, and the corresponding activation energy value for the w0 = 5 system has been found to be 3.4 kcal mol-1, whereas for the latter two systems, it is approximately 5 kcal mol-1. Dynamic light scattering measurements indicate an insignificant change in size with temperature for RMs with w0 = 5 and 10, whereas for a w0 = 20 system, the hydrodynamic diameter increases with temperature. Time-resolved fluorescence anisotropy studies reveal a decrease in the rotational restriction on the probe with increasing temperature for all systems. Wobbling-in-cone analysis of the anisotropy data also supports this finding.     

Enhanced magnetic anisotropy of nickel nanosheet prepared in Na-4 mica

Nanosheets of nickel with thickness equal to 0.6 nm have been grown within the interlayer spaces of Na-4 mica. The sheets are made up of percolative clusters of nanodisks. Magnetization characteristics indicate a superparamagnetic behavior with a blocking temperature of 428 K. The magnetic anisotropy constant as extracted from the coercivity data has been found to be higher than that of bulk nickel by two orders of magnitude. This is ascribed to a large aspect ratio of the nickel nanophase. The Bloch exponent is also found to be considerably different from that of bulk nickel because of a size effect. The Bloch equation is still found to be valid for the two dimensional structures.     

Chromium Trioxide Supported onto Wet Silica Gel: Rapid Oxidation of Alcohols to Carbonyl Compounds Under Microwave Irradiation in Solventless System

In an environmentally benign system, alcohols are rapidly oxidized to carbonyl compounds using CrO 3 supported onto wet silica gel as an oxidant under microwave irradiation.     

Microwave Thermolysis: A Rapid and Selective Method for the Cleavage of THP Ethers Using CrO 3 Supported onto Zeolite in Solventless System

Oxidative deprotection of tetrahydropyranyl ethers (THP ethers) using chromium trioxide supported onto zeolite under microwave irradiation in solvent free condition is described.     

Synthesis of Bicyclic Compounds Derived from 1,2,4-Benzotriazines

The synthesis of bicyclic compounds derived from benzo[1,2,4]triazines is described.     

Effect of Fe addition on the crystallization behaviour and Curie temperature of CoCrSiB-based amorphous alloys

The crystallization behaviour and Curie temperature of melt-spun Co_{71? x} Fe _x Cr₇Si₈B₁₄ (x?=?0, 2, 3.2, 4, 6, 8 and 12?at.%) amorphous alloys have been studied. Differential scanning calorimetry (DSC) showed two stages of crystallization. The first stage of crystallization (T _X1) in the alloy with 6?at.%?Fe was the highest and it had the highest activation energy. X-ray diffraction studies revealed that the primary crystalline phase is hcp-(CoCr)₂Si for Fe-free alloy, whereas (CoFeCr)₂Si and (CoFeCr)₃Si phases were formed with the addition of Fe. hcp-Co was also formed along with these phases. The secondary crystalline phases were fcc-Co and various boron-rich phases. The Curie temperature of the alloys also changed with the addition of Fe to the system. Like the primary crystallization temperature, the Curie temperature of the alloys did not vary systematically with the Fe content. The addition of Fe to the Co-based system changes the nearest-neighbour interaction. This changes the exchange interaction between the transition metal elements. Due to the asymmetry in the Bethe–Slater curve, a systematic variation with Fe addition was not observed in the Curie temperature measurement.