DNA-templated three-branched nanostructures for nanoelectronic devices

Three-branched DNA molecules have been designed and assembled from oligonucleotide components. These nucleic acid constructs contain double- and single-stranded regions that control the hybridization behavior of the assembly. Specific localization of a single streptavidin molecule at the center of the DNA complex has been investigated as a model system for the directed placement of nanostructures. Highly selective silver and copper metallization of the DNA template has also been characterized. Specific hybridization of these DNA complexes to oligonucleotide-coupled nanostructures followed by metallization should provide a bottom-up self-assembly route for the fabrication and characterization of discrete three-terminal nanodevices.     

Preparative uv-laser photochemistry of the azoalkane spiro(2,3-diazabicyclo [2.2.1]hept-2-ene-7′,1-cyclopropane): Trapping of the 1,4-Diradical 2-(3-Cyclopentenyl) ethyl by Molecular Oxygen

Photo-extrusion of nitrogen from the azoalkane 1 in the presence of molecular oxygen gave besides the hydrocarbons 3 and 5, the endoperoxide 10 and hydroperoxide 11, the former via trapping of the 1,4-diradical 4 by triplet oxygen, the latter by ene-reaction-6f hydrocarbon 5 with singlet oxygen.     

Gamma radiation from the209Bi(3He, 3nγ)209at reaction

Gamma-radiation from the reactions of 28 MeV and 26 MeV³He-ions on the²⁰⁹Bi target has been studied by means of Ge(Li) detectors. Individual observed prompt -ray transitions have been assigned to the corresponding reactions. The results of previous studies of the²⁰⁹At nucleus have been verified and completed. Two new levels at energies of 640 keV and 1270·5 keV have been introduced. Additionally, 15 new transitions have been observed which could belong to²⁰⁹At. The²⁰⁹At level structure is discussed in terms of nuclear models.     

Field gradient electrophoresis

The class of equilibrium gradient methods utilizes the opposition of two forces, at least one of which changes in magnitude with position, to separate and concentrate analytes. The drawback of many methods of this type is that the production of two opposing forces requires in comparison to standard methods, such as capillary electrophoresis, a relatively complex apparatus. In addition, for techniques such as electric field gradient focusing, hydrodynamic flow leads to Taylor dispersion, which limits the attainable concentration factor. We propose a new method, gradient field electrophoresis, which achieves analyte separation and focusing with only one spatially varying force, an electric field gradient. A model for the method is developed and used to analyze peak capacity. Experimental results for a protein (R-phycoerythrin) are given and compared to the model.     

Singlet oxygenation of cis,cis-1,5-cyclooctadiene: a convenient synthetic entry into 5,8-difunctionalized oxygen derivatives of 1,3-cyclooctadiene

The 6-hydroperoxy-1,4-cyclooctadiene ($\text{2}$), which is formed in the photosensitized oxygenation of 1,5-cyclooctadiene ($\text{1}$), affords on further singlet oxygenation 5,8-dihydroperoxy-1,3-cyclooctadiene ($\text{3}$), which via triphenylphosphine reduction leads to $\text{cis}$-5,8-dihydroxy-1,3-cyclooctadiene ($\text{4}$) and subsequent pyridinium chlorochromate oxidation to 1,3-cyclooctadien-5,8-dione ($\text{8}$).     

Relative reactivity of peracids versus dioxiranes (DMDO and TFDO) in the epoxidation of alkenes. A combined experimental and theoretical analysis

Comparative analysis of the calculated gas-phase activation barriers (DeltaE++) for the epoxidation of ethylene with dimethyldioxirane (DMDO) and peroxyformic acid (PFA) [15.2 and 16.4 kcal/mol at QCISD(T)// QCISD/6-31+G(d,p)] and E-2-butene [14.3 and 13.2 kcal/mol at QCISD(T)/6-31G(d)//B3LYP/6-311+G(3df,2p)] suggests similar oxygen atom donor capacities for both oxidants. Competition experiments in CH(2)Cl(2) solvent reveal that DMDO reacts with cyclohexene much faster than peracetic acid/acetic acid under scrupulously dried conditions. The rate of DMDO epoxidation is catalyzed by acetic acid with a reduction in the classical activation barrier of 8 kcal/mol. In many cases, the observed increase in the rate for DMDO epoxidation in solution may be attributed to well-established solvent and hydrogen-bonding effects. This predicted epoxidative reactivity for DMDO is not consistent with what has generally been presumed for a highly strained cyclic peroxide. The strain energy (SE) of DMDO has been reassessed and its moderated value (about 11 kcal/mol) is now more consistent with its inherent gas-phase reactivity toward alkenes in the epoxidation reaction. The unusual thermodynamic stability of DMDO is largely a consequence of the combined geminal dimethyl- and dioxa-substitution effects and unusually strong C-H and C-CH(3) bonds. Methyl(trifluoromethyl)dioxirane (TFDO) exhibits much lower calculated activation barriers than DMDO in the epoxidation reaction (the average DeltaDeltaE++ values are about 7.5 kcal/mol). The rate increase relative to DMDO of approximately 10(5), while consistent with the higher strain energy for TFDO (SE approximately 19 kcal/mol) is attributed largely to the inductive effect of the CF(3) group. We have also examined the effect of alkene strain on the rate of epoxidation with PFA. The epoxidation barriers are only slightly higher for the strained alkenes cyclopropene (DeltaE++ = 14.5 kcal/mol) and cyclobutene (DeltaE++ = 13.7 kcal/mol) than for cyclopentene (DeltaE++ = 12.1 kcal/mol), reflecting the fact there is little relief of strain in the transition state. Alkenes strained by twist or pi-bond torsion do exhibit much lower activation barriers.     

Chemoproteomic profiling of kinases in live cells using electrophilic sulfonyl triazole probes

Sulfonyl-triazoles are a new class of electrophiles that mediate covalent reaction with tyrosine residues on proteins through sulfur-triazole exchange (SuTEx) chemistry. Recent studies demonstrate the broad utility and tunability of SuTEx chemistry for chemical proteomics and protein ligand discovery. Here, we present a strategy for mapping protein interaction networks of structurally complex binding elements using functionalized SuTEx probes. We show that the triazole leaving group (LG) can serve as a releasable linker for embedding hydrophobic fragments to direct molecular recognition while permitting efficient proteome-wide identification of binding sites in live cells. We synthesized a series of SuTEx probes functionalized with a lipid kinase fragment binder for discovery of ligandable tyrosines residing in catalytic and regulatory domains of protein and metabolic kinases in live cells. We performed competition studies with kinase inhibitors and substrates to demonstrate that probe binding is occurring in an activity-dependent manner. Our functional studies led to discovery of probe-modified sites within the C2 domain that were important for downregulation of protein kinase C-alpha in response to phorbol ester activation. Our proof of concept studies highlight the triazole LG of SuTEx probes as a traceless linker for locating protein binding sites targeted by complex recognition elements in live cells.

Sulfonyl-triazole probes modified with a kinase recognition element are developed for live cell activity-based profiling to identify tyrosine sites located in catalytic and regulatory domains that are important for kinase function.     

Mutual Solubilities of Water and Alkanes

Summary.  The evaluation of mutual solubility data for systems water with n-alkanes, isoalkanes, and cycloalkanes along the three phase line is reported and a formula for the prediction of solubility of alkanes in water is developed. Then a cubic equation of state with an added term, which accounts for hydrogen bonding is used for correlation of liquid–liquid equilibrium data and for prediction of solubility of water in hydrocarbons using alkane in water solubility data. Comparison of the predicted and experimental solubilities is performed using all accessible experimental data. With this approach it is possible to predict the solubilities of water in alkanes with good accuracy over the temperature range up to about 20 K below critical temperature. Solubility of alkanes in water can also be calculated using experimental data for solubility of water in alkanes but results of these calculations are more sensitive to experimental errors of the data. Corresponding author: E-mail: macz@ichf.edu.pl Received August 5, 2002; accepted (revised) September 13, 2002 Published online March 13, 2003 RID="a" ID="a" Dedicated to Prof. Dr. H. Gamsj?ger on the occasion of his 70^th birthday anniversary     

Analytical use of the selective extraction of copper as its phenylacetate

Chloroform solution of phenylacetic add has been found very suitable for extraction and colorimetric determination of copper. Iron and uranium are the main interferences, which can be overcome by masking with ammonium fluoridc. Under these conditions, only gold(III), platinum(IV) and palladium(II) are co-extracted, but their colour does not interfere with measurement of the green copper extract at 700 nm. The method has been applied to the determination of copper in iron, steels, uranium, lead concentrates and alloys containing nickel, cobalt, etc. The extraction procedure can also be used to remove interference of iron, copper and uranium in the determination of manganese with formaldoxime.     

Electron impact mass spectrometry of some 6-substituted tetrazolo[1,5-c]pyrimidin-5(6H)-ones

The electron impact mass spectra of 6-methyltetrazolo[1,5-c]pyrimidin-5(6H)-one, its 7- and 8-methyl derivatives, three 8-halo derivatives and two related nucleosides are reported. On the basis of the high-resolution data and detected metastable ions, the fragmentation routes of their molecular ions are proposed. Coexistence of the tautomeric forms of the title compounds of cyclic (tetrazole) or linear (azide) structure can be suggested owing to the fragmentation pathways identified for the bases. Decomposition of the related nucleosides lies in the breaking of nucleoside bonds to produce the appropriate base and sugar fragments.