A robust set of black walnut microsatellites for parentage and clonal identification

We describe the development of a robust and powerful suite of 12 microsatellite marker loci for use in genetic investigations of black walnut and related species. These 12 loci were chosen from a set of 17 candidate loci used to genotype 222 trees sampled from a 38-year-old black walnut progeny test. The 222 genotypes represent a sampling from the broad geographic distribution of the species. Analysis of the samples using the 12 loci revealed an average expected heterozygosity of 0.83, a combined probability of identity of 3×10⁻¹⁹, and a combined probability of exclusion for paternity analysis of >0.999. The 222 genotyped trees from the progeny test comprised 39 open-pollinated families, 29 of which (having at least five sampled progeny) were used to estimate the outcrossing rate for the progeny trial. The same 29 families were used to construct a Neighbor-Joining dendrogram based upon allele sharing between individuals. The multilocus estimate of the outcrossing rate was 100% (standard error of zero), higher than the 90% level found in previous studies at the embryo stage, suggesting that both artificial and natural selection against selfs may have occurred over the 38-year lifespan of the progeny trial. In the Neighbor-Joining dendrogram, the majority of the putative siblings grouped together in 21 out of the 29 families, showing that the microsatellites were able to discern most of the family structure in the dataset. Our results indicate that errors were sometimes committed during the establishment of the progeny test. This set of microsatellite loci clearly provides a powerful tool for future applications in black walnut.     

Biodiversity management approaches for stream–riparian areas: Perspectives for Pacific Northwest headwater forests,microclimates, and amphibians

Stream–riparian areas represent a nexus of biodiversity, with disproportionate numbers of species tied to and interacting within this key habitat. New research in Pacific Northwest headwater forests, especially the characterization of microclimates and amphibian distributions, is expanding our perspective of riparian zones, and suggests the need for alternative designs to manage stream–riparian zones and their adjacent uplands. High biodiversity in riparian areas can be attributed to cool moist conditions, high productivity and complex habitat. All 47 northwestern amphibian species have stream–riparian associations, with a third being obligate forms to general stream–riparian areas, and a quarter with life histories reliant on headwater landscapes in particular. Recent recognition that stream-breeding amphibians can disperse hundreds of meters into uplands implies that connectivity among neighboring drainages may be important to their population structures and dynamics. Microclimate studies substantiate a “stream effect” of cool moist conditions permeating upslope into warmer, drier forests. We review forest management approaches relative to headwater riparian areas in the U.S. Pacific Northwest, and we propose scenarios designed to retain all habitats used by amphibians with complex life histories. These include a mix of riparian and upslope management approaches to address the breeding, foraging, overwintering, and dispersal functions of these animals. We speculate that the stream microclimate effect can partly counterbalance edge effects imposed by upslope forest disturbances, hence appropriately sized and managed riparian buffers can protect suitable microclimates at streams and within riparian forests. We propose one approach that focuses habitat conservation in headwater areas – where present management allows extensive logging – on sensitive target species, such as tailed frogs and torrent salamanders that often occur patchily. Assuming both high patchiness and some concordance among the distribution of sensitive species, protecting areas with higher abundances of these animals could justify less protection of currently unoccupied or low-density habitats, where more intensive forest management for timber production could occur. Also, we outline an approach that protects juxtaposed headwater patches, retaining connectivity among sub-drainages using a 6th-field watershed spatial scale for assuring well-distributed protected areas across forested landscapes. However, research is needed to test this approach and to determine whether it is sufficient to buffer downstream water quality and habitat from impacts of headwater management. Offering too-sparse protection everywhere is likely insufficient to conserve headwater habitats and biodiversity, while our alternative targeted protection of selected headwaters does not bind the entire forest landscape into a biodiversity reserve.     

SEM and shrinkage analyses of Southern Pine wood following pyrolysis

Summary Samples of Southern Pine (Pinus spp.) charred to 250°, 300°, 350°, 400° or 600°C in a flowing nitrogen atmosphere at rates of 1°, 10° and 50°C/min were examined using the scanning electron microscope to quantify changes in cross-sectional tracheid dimensions. The disappearance of discrete cell wall layers was time-dependent as opposed to strictly temperature-dependent. Tracheid diameters decreased in response to temperature and charring rate. Double cell wall thickness values also decreased in response to charring. This shrinkage was nearly isotropic. Below 300°C, latewood cells were more stable than earlywood cells. Above 300°C, the reverse was true. This was attributed to the probable circumferential arrangement of cellulose, hemicellulose, and lignin within the cell wall. The highest rate of thermal degradation was between 300° and 350°C.The sample material was prepared by F. C. Beall and D. H. Slocum at the University of TorontoThe authors are Assistant Professor of Forestry, Professor of Biological Sciences and Professor of Forestry, respectively, at the University of Missouri-Columbia, Columbia     

An artificial diet for shrews (Soricidae)

The common shrew (Sorex araneus L.) and the pygmy shrew (S. minutus L.) could be raised for several months in captivity using the tupaii food Altromin 8010^®. The artificial diet was well accepted and the animals increased in weight.     

Long- and short-term flooding effects on survival and sink-source relationships of swamp-adapted tree species

About 95% of swamp tupelo (Nyssa sylvatica var. biflora (Walt.) Sarg.) and sweetgum (Liquidambar styraciflua L.) seedlings survived continuous root flooding for more than two years, whereas none of the swamp chestnut oak (Quercus michauxii Nutt.) and cherrybark oak (Q. falcata var. pagodifolia Ell.) seedlings survived one year of flooding. Death of oak seedlings occurred in phases associated with periods of major vegetative growth, e.g., after bud burst in spring, after summer stem elongation, and during the winter deciduous stage, suggesting that stored reserves and sources were inadequate to maintain the seedlings when vegetative sinks were forming. Additional evidence that flooding induced a source deficiency in oak was that leaves of flooded oak were 65 to 75% smaller than leaves of nonflooded oak. Flooded swamp tupelo seedlings had a normal leaf size and patchy stomatal opening compared with nonflooded seedlings. Flooding caused increases in alcohol dehydrogenase (ADH) specific activity in taproot cambial tissues and increases in starch concentrations of swamp tupelo seedlings that were reversed when seedlings were removed from flooding. Flooding had little effect on soluble sugar concentrations in swamp tupelo or sweetgum. In the long-term flood-dry-flood treatment, in which all species had survivors, upper canopy leaf photosynthetic rates were higher in all species during the dry period than in nonflooded controls, whereas their starch and soluble sugars concentrations were similar to those of nonflooded controls. Based on seedling survival and the sink-source relationships, the order of flood tolerance was: swamp tupelo > sweetgum > swamp chestnut oak > cherrybark oak.     

Effects of white-tailed deer on vegetation structure and woody seedling composition in three forest types on the Piedmont Plateau

White-tailed deer (Ododcoileus virginiana) can substantially affect the structure and species composition of a forest. The tolerance of a forest community to browsing may vary by type as a result of varying biotic and abiotic factors of the environment. To date, no studies have compared the effects of browsing among forest communities within a physiographic region. We investigated the effects of browsing on vegetation structure and woody seedling composition in three forest types (oak–hickory, Virginia pine–eastern red cedar, bottomland hardwood) in Manassas National Battlefield Park (MNBP), Virginia, USA. We compared forb cover, vertical plant cover (0–1.5 m tall), and survival of tagged seedlings in 10 exclosed (2 m × 6 m) and 10 unexclosed plots in each forest type during a 5-year period. No differential effects of browsing were found among forest types. In all forest types, deer (67 deer/km²) suppressed forb and vertical plant cover to levels less than would be expected in the absence of deer. Seedling survival rates of most species were significantly reduced by browsing. By the 4th year of the study, box elder (Acer negundo), hickory (Carya spp.), and red maple (Acer rubrum) had been eliminated from unexclosed plots, and red and white oaks (Quercus spp.) dramatically reduced. Ash (Fraxinus spp.), black cherry (Prunus serotina), and hackberry (Celtis occidentalis), although significantly impacted, remained the most abundant species throughout the study. These findings suggest that white-tailed deer may be modifying the structure of the forest interior to the extent that it adversely affects wildlife species dependent on a dense understory to thrive. We predict that the future composition of forests in MNBP will shift towards stands with fewer species and a greater dominance of ash, black cherry, and hackberry, particularly in the oak–hickory and bottomland hardwood forests, where the majority of current dominants are most affected.     

Methane emissions and δ13C composition from beef steers consuming increasing proportions of sericea lespedeza hay on bermudagrass hay diets

An experiment was conducted to evaluate the effects of different proportions of ‘Au Grazer’ sericea lespedeza [SL, Lespedeza cuneata (Dum. Cours.) G. Don], a legume rich in condensed tannins (CT), on nutrient intake and digestibility, and to estimate methane (CH₄) emissions and ¹³C isotopic composition (δ¹³C_CH4) from beef steers consuming a forage-based diet. Twenty-five Angus-crossbred steers were distributed in a randomized complete block design (344 ± 48 kg initial BW), and randomly assigned to one of five treatments: 0SL, 25SL, 50SL, 75SL, and 100SL, diets containing 0%, 25%, 50%, 75%, and 100% of SL hay, respectively, mixed with ‘Tifton-85’ bermudagrass hay (Cynodon spp.). The study was carried out for two experimental periods of 21-d each. The statistical model included the fixed effect of treatment and random effects of block, experimental period, and their interaction. Apparent total tract digestibility of crude protein, neutral detergent fiber, and acid detergent fiber was linearly decreased (P < 0.001) by the inclusion of SL. No effects were observed for total CH₄ emissions per day, nor for CH₄ relative to organic matter intake or digestible organic matter with the inclusion of SL. However, emission of CH₄ in relation to intake of CT was affected by treatment (P < 0.001). A linear (P < 0.001) decrease and a quadratic effect (P < 0.001) were observed for δ¹³C of diets and gas, respectively, in which diets and enteric CH₄ with greater inclusion of SL were more depleted in ¹³C. Moreover, the difference in δ¹³C between diets and gas (Δδ¹³C) had a linear decrease (P = 0.001) with the inclusion of SL. The model developed to predict the C₃ proportions in the enteric CH₄ fitted to predicted values (P < 0.0001). Therefore, greater proportions of SL resulted in lesser CH₄ emission when CT intake was considered and the isotopic composition from enteric CH₄ was able to predict the contribution of SL in the emissions.     

Marine shrimp aquaculture: a novel waste treatment system

Ecuadorian Penaeus vannamei were cultured in dirt ponds (each of approximately 163 m²) at four different stocking densities, i.e. 5 shrimp m⁻², 10 shrimp m⁻², 15 shrimp m⁻² and 20 shrimp m⁻². Experiments were carried out over three different periods during the year. Each experiment lasted for 11–14 weeks. No commercial feed was given to the shrimp. The only input to the ponds was about 30 kg of cattle manure per pond per week. Chemical composition of the cattle manure was analyzed. Water quality parameters such as temperature, pH, DO and turbidity were recorded twice daily for each experiment; nutrients (nitrite, nitrate, ammonium and phosphate), water ATP, sediment ATP, H₂S and chlorophyll were measured twice weekly for each experiment. Shrimp were sampled either weekly or bi-weekly for body weight measurements.

The results showed a negative correlation between stocking density and growth. Weekly growth ranged from 0·44 to 1·58 g week⁻¹. Survival was over 50% in all treatments and averaged at 70·8%. Under these stocking densities, shrimp production ranged from 4·4 to 18·8 kg ha⁻¹ day⁻¹. The stocking density of 15 shrimps m⁻² provides better production than the other stocking densities.

Water quality data did not relate to any shrimp growth. Water nutrient levels in pond discharge water were less than or equal to the nutrients in the incoming water in spite of the weekly addition of cattle manure and did not increase with the addition of cattle manure. No coliform bacteria were detected in any pond water samples through the study period. This indicates digestion of cattle manure in marine shrimp ponds would not pollute the environment with high concentrations of dissolved nutrients.

Thus, a marine shrimp pond can be considered a dissolved nutrient marine treatment plant converting unwanted cattle manure (1841 kg cattle manure ha⁻¹ week⁻¹ in this study) into a valuable commodity — shrimp.