Three-dimensional segmentation and growth-rate estimation of small pulmonary nodules in helical CT images

Small pulmonary nodules are a common radiographic finding that presents an important diagnostic challenge in contemporary medicine. While pulmonary nodules are the major radiographic indicator of lung cancer, they may also be signs of a variety of benign conditions. Measurement of nodule growth rate over time has been shown to be the most promising tool in distinguishing malignant from nonmalignant pulmonary nodules. In this paper, we describe three-dimensional (3-D) methods for the segmentation, analysis, and characterization of small pulmonary nodules imaged using computed tomography (CT). Methods for the isotropic resampling of anisotropic CT data are discussed. 3-D intensity and morphology-based segmentation algorithms are discussed for several classes of nodules. New models and methods for volumetric growth characterization based on longitudinal CT studies are developed. The results of segmentation and growth characterization methods based on in vivo studies are described. The methods presented are promising in their ability to distinguish malignant from nonmalignant pulmonary nodules and represent the first such system in clinical use.     

On the development of colloidal nanoparticles towards multifunctional structures and their possible use for biological applications

In this Review, we describe the synthesis of high-quality colloidal nanoparticles in organic solvents, the mechanisms by which they can be transferred into aqueous solution, and some of their applications in biology. In particular, we will place emphasis on the creation of multifunctional nanoparticles or nanoparticle assemblies.     

GaN epitaxial layers prepared on nano-patterned Si(001) substrate

We report the growth of GaN epitaxial layer on Si(001) substrate with nano-patterns prepared by dry etching facility used in integrated circuit (IC) industry. It was found that the GaN epitaxial layer prepared on nano-patterned Si(001) substrate exhibits both cubic and hexagonal phases. It was also found that threading dislocation observed from GaN prepared on nano-patterned Si(001) substrate was significantly smaller than that prepared on conventional unpatterned Si(111) substrate. Furthermore, it was found that we can reduce the tensile stress in GaN epitaxial layer by about 78% using the nano-patterned Si(001) substrate.     

Characterization of PAHs in the atmosphere of carbon black manufacturing workplaces

The objective of this study was set out to characterize the polycyclic aromatic hydrocarbon (PAH) content in the atmosphere of an oil furnace carbon black manufacturing plant located in southern Taiwan. A standard semi-volatile sampling train, the PS-1 sampler, was used to collect samples from eight areas, including the feedstock oil unloading, furnace, filtering/micro-pulverization, pelletizing, packaging, office/outside, office/inside, and boundary area, respectively. For each area, side-by-side static samples were collected simultaneously and a total of 16 samples were obtained. For each collected sample, the adsorbent-retained PAH content and the filter-retained PAH content were used directly to determine the concentrations of gaseous-phase PAHs and particle-bound PAHs, respectively. The gas chromatograph/mass spectrometer (GC/MS) technique was used for PAH analyses, and a total of 21 PAH species were determined. Results show the gaseous-phase PAHs accounted for only 69.2% of the total PAH content for samples collected from the packaging area, which was significantly lower than those samples collected from the rest of seven areas (ranging from 96.3 to 99.7%). The result is not so surprising since the packaging area had the highest dust concentration due to the releasing of carbon black dusts during the packaging process. In this study, we further examine the contribution of gaseous-phase PAHs to the total benzo[a]pyrene equivalent (BaP(eq)) content from the health-risk assessment view of point. It can be found the contribution of gaseous-phase PAHs to the total BaP(eq) content (63.1%) was quite comparable to the corresponding contribution to the total PAH content for samples collected from the packaging area. However, a different trend can be found for samples collected from the other seven areas, where the contributions of gaseous-phase PAHs to the total BaP(eq) content (ranging from 67.7 to 93.4%) were lower than the corresponding contributions to the total PAH content. The above results can be explained by PAH homologues that contained in both gaseous-phase and particle-bound PAHs. It was found the gaseous-phase PAHs contained higher fractions of less carcinogenic low molecular weight PAH homologues, whereas particle-bound PAHs contained higher fractions of more carcinogenic high molecular weight PAH homologues. Considering the contributions of gaseous-phase PAHs to both total PAH content and total BaP(eq) content were well above 50% for the eight studied areas, it is concluded that both particle-bound and gaseous-phase PAHs should be included for assessing the exposures of carbon black workers.     

Lensed fiber probes designed as an alternative to bulk probes in optical coherence tomography

We demonstrate a compact all-fiber sampling probe for an optical coherence tomography (OCT) system. By forming a focusing lens directly on the tip of an optical fiber, a compact sampling probe could be implemented. To simultaneously achieve a sufficiently long working distance and a good lateral resolution, we employed a large-mode area photonic crystal fiber (PCF) and a coreless silica fiber (CSF) of the same diameters. A working distance of up to 1270 microm, a 3 dB distance range of 2210 microm, and a transverse resolution of 14.2 microm were achieved with the implemented PCF lensed fiber; these values are comparable to those obtainable with a conventional objective lens having an NA of 0.25 (10 x). The performance of the OCT system equipped with the proposed PCF lensed fiber is presented by showing the OCT images of a rat finger as a biological sample and a pearl as an in-depth sample.     

A new method for characterizing denitrifying phosphorus removal bacteria by using three different types of electron acceptors

This study investigated the characteristics of denitrifying phosphorus removal bacteria by using three different types of electron acceptors as well as the positive role of nitrite in phosphorus removal process. Denitrifying phosphorous removal bacteria was enriched under anaerobic-anoxic (A/A) condition. To understand A/A sludge better, sludge from two other sources were also studied. These include sludges obtained from a lab-scale anaerobic-anoxic-aerobic (A/A/O) system and a local sewage treatment plant. Three types of possible electron acceptors (oxygen, nitrate and nitrite) were examined for their roles in phosphorus uptake. The results obtained indicated that oxygen, nitrate and nitrite were able to act as electron acceptors successfully. This observation suggested that in addition to the two well-accepted groups of phosphorus removal bacteria (one can only utilize oxygen to take up phosphorus, P(O), while the other can use both oxygen and nitrate, P(ON)), a new group of phosphorus removal bacteria, P(ON(n)), which could use oxygen, nitrate or nitrite to take up phosphorus was identified. The relative population of these three types of bacteria could be calculated from results obtainable from phosphorus uptake batch experiments with either oxygen or nitrate or nitrite as electron acceptor. The results obtained in this study showed that A/A sludge had similar phosphorus removal performance as the A/A/O sludge. However, it has better denitrifying phosphorus removal capability, which was demonstrated by the relative population of the three groups of bacteria. The results also suggested that nitrite was not an inhibitor to phosphorus removal process. Instead, it is an alternative electron acceptor to oxygen or nitrate.     

Investigation of assimilable organic carbon (AOC) and bacterial regrowth in drinking water distribution system

This paper investigated the variation of assimilable organic carbon (AOC) concentrations in water from several typical water treatment plants and distribution systems in a northern city of China. It is concluded from this study that: (1) The AOC in most of the product water of the studied water treatment plants and the water from the associated distribution systems could not meet the biostability criteria of 50-100 microg/L. (2) Only 4% of the measured AOC concentrations were less than 100 microg/L. However, about half of the measured AOC values were less than 200 microg/L. (3) Better source water quality resulted in lower AOC concentrations. (4) The variation of AOC concentrations in distribution systems was affected by chlorine oxidation and bacterial activity: the former resulted in an increase of AOC value while the latter led to a reduction in AOC. (5) The variation of AOC concentration followed different patterns in different distribution systems or different seasons due to their respective operational characteristics. (6) Less than 30% of AOC could be removed by a conventional treatment process, whereas 30-60% with a maximum of 50-60% could be removed by granular activated carbon (GAC). (7) The observation via scanning electron microscope (SEM) on distribution pipe tubercle samples demonstrated that the pipe inner wall was not smooth and bacteria multiplied in the crevice as well as in the interior wall of distribution pipes.     

Automatic construction of multiple-object three-dimensional statistical shape models: application to cardiac modeling

A novel method is introduced for the generation of landmarks for three-dimensional (3-D) shapes and the construction of the corresponding 3-D statistical shape models. Automatic landmarking of a set of manual segmentations from a class of shapes is achieved by 1) construction of an atlas of the class, 2) automatic extraction of the landmarks from the atlas, and 3) subsequent propagation of these landmarks to each example shape via a volumetric nonrigid registration technique using multiresolution B-spline deformations. This approach presents some advantages over previously published methods: it can treat multiple-part structures and requires less restrictive assumptions on the structure's topology. In this paper, we address the problem of building a 3-D statistical shape model of the left and right ventricle of the heart from 3-D magnetic resonance images. The average accuracy in landmark propagation is shown to be below 2.2 mm. This application demonstrates the robustness and accuracy of the method in the presence of large shape variability and multiple objects.     

Effect of air in the thermal decomposition of 50 mass% hydroxylamine/water

This paper presents experimental measurements of 50 mass% hydroxylamine (HA)/water thermal decomposition in air and vacuum environments using an automatic pressure tracking adiabatic calorimeter (APTAC). Overall kinetics, onset temperatures, non-condensable pressures, times to maximum rate, heat and pressure rates versus temperature, and mixture vapor pressures for the experiments in vacuum were similar when compared to the corresponding data for HA decomposition in air. Determined was an overall activation energy of 119+/-8 kJ/mol (29+/-2 kcal/mol), which is low compared to 257 kJ/mol (61.3 kcal/mol) required to break the H(2)N-OH bond reported in the literature. The availability of oxygen from air did not affect detected runaway decomposition products, which were H(2), N(2), N(2)O, NO, and NH(3), for samples run in vacuum or with air above the sample. A delta H(rxn) of -117 kJ/mol (28 kcal/mol) was estimated for the HA decomposition reaction under runaway conditions.     

Physicochemical properties of CWJ-a-5, a new antitumor 3-arylisoquinoline derivative

The compound CWJ-a-5 [1-(4-methylpiperazinyl)-3-phenylisoquinoline hydrochloride] is a novel 3-arylisoquinoline derivative which has exhibited potent antitumor activity. As part of an effort to develop a useful formulation for clinical evaluation of this compound, the aqueous stability of CWJ-a-5 as a function of pH, ionic strength, and temperature, as well as its various physicochemical properties, have been examined. The pKa value obtained by potentiometric titration in methanol-water mixtures was 3.61, at 25 degrees C. The aqueous solubility and the apparent partition coefficient of CWJ-a-5 over the pH range 2.08-9.88 were consistent with those expected of a weak acid of similar pKa value. The degradation of CWJ-a-5 was found to follow apparent first-order kinetics. The pH-rate profiles generated at 80 degrees C were accounted for by acid-catalyzed degradation at low pH and base-catalyzed degradation at high pH. The activation energy was determined as 22.12 kcal/mol for the degradation of CWJ-a-5 in a pH 2.92 solution with a constant ionic strength of 0.2. Increasing the ionic strength up to 0.9 led to a higher degradation rate constant at pH 2.92. However, CWJ-a-5 was very stable even in a pH 2.92 solution, and its shelf-life was calculated to be 2.03 years at 25 degrees C from the Arrhenius plot.