Methods for parallel computation of complex flow problems

This paper is an overview of some of the methods developed by the Team for Advanced Flow Simulation and Modeling (TAFSM) [http://www.mems.rice.edu/TAFSM/] to support flow simulation and modeling in a number of “Targeted Challenges”. The “Targeted Challenges” include unsteady flows with interfaces, fluid–object and fluid–structure interactions, airdrop systems, and air circulation and contaminant dispersion. The methods developed include special numerical stabilization methods for compressible and incompressible flows, methods for moving boundaries and interfaces, advanced mesh management methods, and multi-domain computational methods. We include in this paper a number of numerical examples from the simulation of complex flow problems.     

On‐line partial discharge detection of turbine generator using gigahertz‐band spatial phase difference method

Partial discharge (PD) within voids in solid insulating systems is a symptom and/or a direct cause of a deterioration of stator windings of a turbine generator. The bandwidth of the electromagnetic waves emitted from PD is very broad and ranges to the gigahertz. We developed a new system based on the spatial phase difference method for detecting microwaves (GHz) emitted from PD. In this paper we applied this system to two off‐line turbine generators in the overhaul and an on‐line turbine generator which has two built‐in antennas. On‐line PD detection of the turbine generator is very useful for recognizing abnormal and/or deteriorated stator winding insulation without a machine outage. It was found that the detection system was able to detect microwaves emitted from PD in an operating turbine generator. © 2000 Scripta Technica, Electr Eng Jpn, 131(4): 38‐43, 2000     

Metabolic inactivation of retinoic acid by a novel P450 differentially expressed in developing mouse embryos

Retinoic acid (RA) is a physiological agent that has a wide range of biological activity and appears to regulate developmental programs of vertebrates. However, little is known about the molecular basis of its metabolism. Here we have identified a novel cytochrome P450 (P450RA) that specifically metabolizes RA. In vitro, P450RA converts all-trans RA into 5,8-epoxy all-trans RA. P450RA metabolizes other biologically active RAs such as 9-cis RA and 13-cis RA, but fails to metabolize their precursors, retinol and retinal. Overexpression of P450RA in cell culture renders the cells hyposensitive to all-trans RA. These functional tests in vitro and in vivo indicate that P450RA inactivates RA. The P450RA gene is not expressed uniformly but in a stage- and region-specific fashion during mouse development. The major expression domains in developing embryos include the posterior neural plate and neural crest cells for cranial ganglia. The expression of P450RA, however, is not necessarily inducible by excess RA. These results suggest that P450RA regulates the intracellular level of RA and may be involved in setting up the uneven distribution of active RA in mammalian embryos.     

Multi-probe scanning system comprising three laser interferometers and one autocollimator for measuring flat bar mirror profile with nanometer accuracy

This paper describes a multi-probe scanning system comprising three laser interferometers and one autocollimator to measure a flat bar mirror profile with nanometer accuracy. The laser interferometers probe the surface of the flat bar mirror that is fixed on top of a scanning stage, while the autocollimator simultaneously measures the yaw error of the scanning stage. The flat bar mirror profile and horizontal straightness motion error are reconstructed by an application of simultaneous linear equations and least-squares method. Measurement uncertainties of the flat bar mirror profile were numerically evaluated for different installation distances between the laser interferometers. The average measurement uncertainty was found to be only 10 nm with installation distances of 10 and 21 mm between the first and second, and first and third interferometers, respectively. To validate the simulation results, a prototype system was built using an X–Y linear stage driven by a stepper motor with steps of 1 mm along the X direction. Experiments were conducted with fixed interferometers distances of 10 and 21 mm, as in the simulation, on a flat bar mirror with a profile known to an accuracy of λ = 632.8 nm. The average value of two standard deviations (95%) of the profile calculated over ten experiments was approximately 10 nm. Other results from the experiment showed that the system can also measure the yaw and horizontal straightness motion errors successfully at a high horizontal resolution. Comparing with the results measured by ZYGO's interferometer, our measured data excluding some edge points showed agreement to within approximately 10 nm. Therefore, we concluded that our measurement profile has an accuracy in the nanometer range.     

Neuronal nitric-oxide synthase is regulated by the Hsp90-based chaperone system in vivo

It is established that the multiprotein heat shock protein 90 (hsp90)-based chaperone system acts on the ligand binding domain of the glucocorticoid receptor (GR) to form a GR.hsp90 heterocomplex and to convert the receptor ligand binding domain to the steroid-binding state. Treatment of cells with the hsp90 inhibitor geldanamycin inactivates steroid binding activity and increases the rate of GR turnover. We show here that a portion of neuronal nitric-oxide synthase (nNOS) exists as a molybdate-stabilized nNOS. hsp90 heterocomplex in the cytosolic fraction of human embryonic kidney 293 cells stably transfected with rat nNOS. Treatment of human embryonic kidney 293 cells with geldanamycin both decreases nNOS catalytic activity and increases the rate of nNOS turnover. Similarly, geldanamycin treatment of nNOS-expressing Sf9 cells partially inhibits nNOS activation by exogenous heme. Like the GR, purified heme-free apo-nNOS is activated by the DE52-retained fraction of rabbit reticulocyte lysate, which also assembles nNOS. hsp90 heterocomplexes. However, in contrast to the GR, heterocomplex assembly with hsp90 is not required for increased heme binding and nNOS activation in this cell-free system. We propose that, in vivo, where access by free heme is limited, the complete hsp90-based chaperone machinery is required for sustained opening of the heme binding cleft and nNOS activation, but in the heme-containing cell-free nNOS-activating system transient opening of the heme binding cleft without hsp90 is sufficient to facilitate heme binding.     

Role of Tannin-Binding Salivary Proteins and Tannase-Producing Bacteria in the Acclimation of the Japanese Wood Mouse to Acorn Tannins

We studied the defense mechanisms against the negative effects of tannins in acorns by using the Japanese wood mouse (Apodemus speciosus) and acorns of a Japanese deciduous oak Quercus crispula, which contain 9.9% tannins on a dry weight basis. For the experiment, we allocated 26 wood mice into two groups: acclimated (N = 12) and nonacclimated (N = 14). Mice in the nonacclimated group were fed only acorns for 10 d after 4 wk of receiving a tannin-free diet. In contrast, mice in the acclimated group received ca. 3 g acorns daily in addition to the tannin-free diet for the first 4 wk, then they were fed only acorns for 10 d. Body weight, food intake, and digestibility were monitored. In addition, the amount of salivary proline-rich proteins (PRPs) and abundance of tannase-producing bacteria (TPB) in the feces of mice were measured. Of the 14 mice in the nonacclimated group, 8 died, whereas only 1 of the 12 in the acclimated group died. During the first 5 d of feeding acorns only, mice in the nonacclimated group lost, on average, 17.5% of their body mass, while those in the acclimated group lost only 2.5%. Food intake, dry matter digestibility, and nitrogen digestibility were higher in the acclimated group than in the nonacclimated group. The results indicate that wood mice can mitigate the negative effects of tannins by acclimation. Path analysis revealed that increased secretion of PRPs and abundance of Lactobacillus type of TPB might explain the acclimation to tannins.     

Effects of oxygen supply condition and specific biofilm interfacial area on phenol removal rate in a three‐phase fluidized bed bioreactor

The effects of oxygen supply conditions and specific biofilm interfacial area on the phenol removal rate in a three‐phase fluidized bed bioreactor were evaluated. The experimental data were well‐explained by the semi‐theoretical equation based on the assumption that the reaction rate follows first‐order reaction kinetics with respect to oxygen and zero‐order one with respect to phenol. Two cases, biological reaction as rate‐controlling step and oxygen absorption as rate‐controlling step, were both explicable by this semi‐theoretical equation. The maximum volumetric phenol removal rate was 27.4 kg·m^?3·d^?1.     

Growth,electronic properties and applications of nanodiamond

Nanodiamond or nanocrystalline diamond is a broad term used to describe a plethora of materials. It is generally accepted that nanocrystalline diamond (NCD) consists of facets less than 100 nm in size, whereas a second term “ultrananocrystalline diamond” (UNCD) has been coined to describe material with grain sizes less than 10 nm. These differences in morphology originate in the growth process. Conventional hydrogen rich gas phases produce facetted diamond with grain size proportional to film thickness and low sp² content. If these films are thin the grains can be less than 100 nm and hence NCD. By starving the plasma of hydrogen, the reduction in etching of sp² can lead to re-nucleation. At the extreme this results in very small grain sizes of around 3–5 nm, UNCD.The electronic properties of these two materials are vastly different. NCD is basically very thin microcrystalline diamond and thus can be doped with boron. It is intrinsically transparent, with absorption increasing with doping level. UNCD is highly absorbing due to its higher sp² content, and exhibits a reduced bandgap due to disorder. By adding nitrogen to the gas phase, the density of states within the bandgap increases and ultimately metallic conductivity can be achieved. This conductivity is n-type but not doping.