A dual‐primal FETI method for solving a class of fluid–structure interaction problems in the frequency domain

The dual‐primal finite element tearing and interconnecting method (FETI‐DP) is extended to systems of linear equations arising from a finite element discretization for a class of fluid–structure interaction problems in the frequency domain. A preconditioned generalized minimal residual method is used to solve the linear equations for the Lagrange multipliers introduced on the subdomain boundaries to enforce continuity of the solution. The coupling between the fluid and the structure on the fluid–structure interface requires an appropriate choice of coarse level degrees of freedom in the FETI‐DP algorithm to achieve fast convergence. Several choices are proposed and tested by numerical experiments on three‐dimensional fluid–structure interaction problems in the mid‐frequency regime that demonstrate the greatly improved performance of the proposed algorithm over the standard FETI‐DP method. Copyright © 2011 John Wiley & Sons, Ltd.     

Off-line coupling of capillary electrophoresis to substrate-assisted laser desorption inductively coupled plasma mass spectrometry

A novel off-line coupling of capillary electrophoresis (CE) and inductively coupled plasma mass spectrometry (ICPMS) is reported here. The coupling interface is based on the connection of a separation capillary to a deposition capillary via a liquid junction maintaining high separation efficiency and sample utilization due to the self-focusing effect and lack of pressure-induced flow in comparison with nebulizer-like interfaces. The separation is recorded in the form of droplets of CE effluent on a suitable substrate--a poly(ethylene terephthalate) glycol (PETG) sample plate placed inside a partially evacuated chamber. Substrate-assisted laser desorption (SALD) is used to vaporize the sample fractions and to enable further transfer to the ICPMS. The mechanism of SALD is examined using model samples deposited on a variety of substrates. The highest response is obtained for a PETG substrate; sample desorption due to ablation of PETG is found to outweigh direct ablation of sample. Detection limits are given for several metal elements. Finally, a rapid (2.5-min), high-resolution separation of Cr(III)/Cr(VI) species injected in subpicomolar quantity is shown.     

Long-term lining performance - Civil engineering problem of potential retrieval of buried spent nuclear fuel

The current solution for the spent fuel, high-level and long-lived radioactive waste is to store them at surface facilities from which they will be subsequently moved to a deep repository. No such repositories are in operation currently but several such facilities are close to the construction phase. A deep repository can be situated in several types of geological conditions including clay formations, salt sediments, argillites and tuffitic and granitic rocks. The character of the host rock is the key factor determining the design and specific requirements of individual components of such a facility. The future potential retrieval of canisters containing nuclear waste from the repository is a further influential factor. The reason for retrieval of containers lies in the development of fast reactors and increased interest for spent fuel reprocessing. Naturally, the decision as to whether retrievability is technically feasible must be made before finalising the design and construction process of the repository. If the decision is made to retrieve, a design which will include all the relevant safety aspects for the potential retrieval of canisters must be determined. The lay-out of the repository, the materials to be used and the design of the various structures of the facility (e.g. access tunnels, disposal shafts, buffer and backfill) are not the only issues to be addressed. The long-term stability of the system as a whole, i.e. of all the components, is crucial. Depending on the disposal concept chosen, the thermal load generated by the waste in the disposal container, saturation by water from the surrounding environment and the loading of the host rock massif will constitute the main processes which will affect the behaviour, safety and future functioning of the repository from the civil engineering point of view. The long-term stability of the lining of disposal galleries is a basic precondition for the safe removal of spent nuclear waste from deep underground repositories. The stability problems of tunnel linings exposed to long-term thermal load have not yet been properly addressed and form the subject of the European TIMODAZ project (Thermal Impact on the Damaged Zone around a Radioactive Waste Disposal in Clay Host Rocks) and also supported by the “Complex System of Methods for Directed Design and Assessment of Functional Properties of Building Materials” project. This paper describes the design, construction and currently available results of a 1:1 scale “in situ” disposal tunnel model which has been built at the Josef Underground Educational Facility in the Czech Republic.     

Antenna Protein Clustering In Vitro Unveiled by Fluorescence Correlation Spectroscopy

Antenna protein aggregation is one of the principal mechanisms considered effective in protecting phototrophs against high light damage. Commonly, it is induced, in vitro, by decreasing detergent concentration and pH of a solution of purified antennas; the resulting reduction in fluorescence emission is considered to be representative of non-photochemical quenching in vivo. However, little is known about the actual size and organization of antenna particles formed by this means, and hence the physiological relevance of this experimental approach is questionable. Here, a quasi-single molecule method, fluorescence correlation spectroscopy (FCS), was applied during in vitro quenching of LHCII trimers from higher plants for a parallel estimation of particle size, fluorescence, and antenna cluster homogeneity in a single measurement. FCS revealed that, below detergent critical micelle concentration, low pH promoted the formation of large protein oligomers of sizes up to micrometers, and therefore is apparently incompatible with thylakoid membranes. In contrast, LHCII clusters formed at high pH were smaller and homogenous, and yet still capable of efficient quenching. The results altogether set the physiological validity limits of in vitro quenching experiments. Our data also support the idea that the small, moderately quenching LHCII oligomers found at high pH could be relevant with respect to non-photochemical quenching in vivo.     

The application of intervertebral implant for spine stabilization]

BACKGROUND: To prevent ischemic complications during coronary bypass grafting on the beating heart, a nonocclusive distal anastomosis technique is needed. One recently developed nonocclusive technique requires apposition of the intima of the graft to the adventitia of the recipient artery, in contrast to current surgical practice, which dictates apposition of both intimas. METHODS: To compare the sole effect of intima-adventitia apposition (n = 18) versus traditional intima-intima apposition (n = 18), we investigated radiolabeled platelet deposition and histomorphologic aspects of vascular wall healing quantitatively in a porcine carotid artery bypass graft model. Both groups were evaluated at 2 hours, 2 days, or 4 weeks. RESULTS: Within the first 2 hours, 3 of 6 pigs with intima-adventitia apposition exhibited cyclic flow reductions as a result of massive mural thrombosis. After intima-adventitia apposition, the number of deposited platelets was significantly higher compared with intima-intima apposition, 147.1 +/- 73.0 x 10(6) and 4.6 +/- 1.0 x 10(6) platelets/cm2 (mean +/- standard error of the mean), respectively (p = 0.03). At 2 days, the suture line was covered with small mural thrombi, whereas no thrombi were found after intima-intima apposition. At 4 weeks, intimal hyperplasia at heel and toe was not significantly different from that with intima-intima apposition. CONCLUSIONS: Despite thrombotic phenomena in the early phase, intima-adventitia apposition yielded a patent anastomosis with a small intimal hyperplasia response.     

Protonation of Nucleobases in Single‐ and Double‐Stranded DNA

Single‐stranded model oligodeoxyribonucleotides, each containing a single protonatable base—cytosine, adenine, guanine, or 5‐methylcytosine—centrally located in a background of non‐protonatable thymine residues, were acid‐titrated in aqueous solution, with UV monitoring. The basicity of the central base was shown to depend on the type of the central base and its nearest neighbours and to rise with increasing oligonucleotide length and decreasing ionic strength of the solution. More complex model oligonucleotides, each containing a centrally located 5‐methylcytosine base, were comparatively evaluated in single‐stranded and double‐stranded form, by UV spectroscopy and high‐field NMR. The N³ protonation of the 5‐methylcytosine moiety in the double‐stranded case occurred at much lower pH, at which the duplex was already experiencing general dissociation, than in the single‐stranded case. The central guanine:5‐methylcytosine base pair remained intact up to this point, possibly due to an unusual alternative protonation on O² of the 5‐methylcytosine moiety, already taking place at neutral or weakly basic pH, as indicated by UV spectroscopy, thus suggesting that 5‐methylcytosine sites in double‐stranded DNA might be protonated to a significant extent under physiological conditions.