Clinical application of single-shot echo-planar diffusion-weighted imaging with compressed SENSE in prostate MRI at 3T: preliminary experience

Magnetic Resonance Materials in Physics, Biology and Medicine - Image quality (IQ) of diffusion-weighted imaging (DWI) with single-shot echo-planar imaging (ssEPI) suffers from low signal-to-noise...     

Practical Reliability and Maintainability Analysis Tool for an Open Source Cloud Computing

We focus on a cloud computing environment by using open source softwares such as OpenStack and Eucalyptus because of the unification management of data and low cost. A cloud computing is attracting attention as a network service to share the computing resources, that is, networks, servers, storage, applications, and services. We propose jump diffusion models based on stochastic differential equations in order to consider the interesting aspect of the provisioning process. Especially, the reliability and maintainability analysis tool for cloud computing is developed in this paper. Also, we analyze actual data to show numerical illustrations of application of the software analysis tool considering the characteristics of cloud computing. Copyright © 2015 John Wiley & Sons, Ltd.     

The effect of small dose of topiroxostat on serum uric acid in patients receiving hemodialysis

Introduction : Topiroxostat, a recently developed xanthine oxidase inhibitor, is expected to have fewer adverse effects than allopurinol because it has different mechanism of action from alloprinol. However, its dosage, usage and safety have not been established in patients with impaired renal function or those undergoing dialysis at the development since no studies was conducted in these patients. Methods : Cross over clinical trial using 3 months of allopurinol and topiroxostat on 27 maintain Japanese HD patients were carried out. The effects on oxidative stress status of both drugs were also evaluated by measuring oxidation reduction potential. Findings : Twenty‐five of twenty‐seven patients completed study. The mean serum uric acid levels in the topiroxostat‐treated arm was significantly lower than it in the allopurinol‐treated arm time‐dependently (P < 0.0001). Corrected oxidative stress ratio defined as biological antioxidant potential/diacron reactive oxygen metabolites was significantly increased in topiroxostat‐arm (*P = 0.0035), but not in allopurinol‐arm (P = 0.1429). No significant difference was seen in diacron reactive oxygen metabolites, biological antioxidant potential, static oxidation‐reduction potential, and capacity oxidation‐reduction potential between pre and post treatment of both drugs. Discussion : It is suggested that a low dose of topiroxostat decreased serum uric acid sufficiently to maintain it below 7.0 mg/dL in patients receiving hemodialysis.     

Estimation of time-dependent input from neuronal membrane potential

The set of firing rates of the presynaptic excitatory and inhibitory neurons constitutes the input signal to the postsynaptic neuron. Estimation of the time-varying input rates from intracellularly recorded membrane potential is investigated here. For that purpose, the membrane potential dynamics must be specified. We consider the Ornstein-Uhlenbeck stochastic process, one of the most common single-neuron models, with time-dependent mean and variance. Assuming the slow variation of these two moments, it is possible to formulate the estimation problem by using a state-space model. We develop an algorithm that estimates the paths of the mean and variance of the input current by using the empirical Bayes approach. Then the input firing rates are directly available from the moments. The proposed method is applied to three simulated data examples: constant signal, sinusoidally modulated signal, and constant signal with a jump. For the constant signal, the estimation performance of the method is comparable to that of the traditionally applied maximum likelihood method. Further, the proposed method accurately estimates both continuous and discontinuous time-variable signals. In the case of the signal with a jump, which does not satisfy the assumption of slow variability, the robustness of the method is verified. It can be concluded that the method provides reliable estimates of the total input firing rates, which are not experimentally measurable.     

Optimizing time histograms for non-Poissonian spike trains

The time histogram is a fundamental tool for representing the inhomogeneous density of event occurrences such as neuronal firings. The shape of a histogram critically depends on the size of the bins that partition the time axis. In most neurophysiological studies, however, researchers have arbitrarily selected the bin size when analyzing fluctuations in neuronal activity. A rigorous method for selecting the appropriate bin size was recently derived so that the mean integrated squared error between the time histogram and the unknown underlying rate is minimized (Shimazaki & Shinomoto, 2007 ). This derivation assumes that spikes are independently drawn from a given rate. However, in practice, biological neurons express non-Poissonian features in their firing patterns, such that the spike occurrence depends on the preceding spikes, which inevitably deteriorate the optimization. In this letter, we revise the method for selecting the bin size by considering the possible non-Poissonian features. Improvement in the goodness of fit of the time histogram is assessed and confirmed by numerically simulated non-Poissonian spike trains derived from the given fluctuating rate. For some experimental data, the revised algorithm transforms the shape of the time histogram from the Poissonian optimization method.     

Peroxiredoxin 2 as a chemotherapy responsiveness biomarker candidate in osteosarcoma revealed by proteomics

Purpose : We aimed to identify novel chemotherapy responsiveness biomarkers for osteosarcoma (OS) by investigating the global protein expression profile of 12 biopsy samples from OS patients. Experimental design : Six patients were classified as good responders and six as poor responders, according to the Huvos grading system. The protein expression profiles obtained by 2‐D DIGE consisted of 2250 protein spots. Results : Among them, we identified 55 protein spots whose intensity was significantly different (Bonferroni adjusted p‐value<0.01) between the two patient groups. Mass spectrometric protein identification demonstrated that the 55 spots corresponded to 38 distinct gene products including peroxiredoxin 2 (PRDX 2). Use of a specific antibody against PRDX 2 confirmed the differential expression of PRDX 2 between good and poor responders, while PRDX 2 levels as measured by Western blotting correlated highly with their corresponding 2‐D DIGE values. The predictive value of PRDX 2 expression was further confirmed by examining an additional four OS cases using Western blotting. Conclusions and clinical relevance : These results establish PRDX 2 as a candidate for chemotherapy responsiveness marker in OS. Measuring PRDX 2 in biopsy samples before treatment may contribute to more effective management of OS.     

LMNtal as a hierarchical logic programming language

LMNtal (pronounced “elemental”) is a simple language model based on hierarchical graph rewriting that uses logical variables to represent connectivity and membranes to represent hierarchy. LMNtal is an outcome of the attempt to unify constraint-based concurrency and Constraint Handling Rules (CHR), the two notable extensions to concurrent logic programming. LMNtal is intended to be a substrate language of various computational models, especially those addressing concurrency, mobility and multiset rewriting. Although the principal objective of LMNtal was to provide a unifying computational model, it is of interest to equip the formalism with a precise logical interpretation. In this paper, we show that it is possible to give LMNtal a simple logical interpretation based on intuitionistic linear logic and a flattening technique. This enables us to call LMNtal a hierarchical, concurrent linear logic language.     

Optimal linear combination of neural networks for improvingclassification performance

This paper presents a new method for linearly combining multiple neural network classifiers based on the statistical pattern recognition theory. In our approach, several neural networks are first selected based on which works best for each class in terms of minimizing classification errors. Then, they are linearly combined to form an ideal classifier that exploits the strengths of the individual classifiers. In this approach, the minimum classification error criterion is utilized to estimate the optimal linear weights. In this formulation, because the classification decision rule is incorporated into the cost function, a more suitable better combination of weights for the classification objective could be obtained. Experimental results using artificial and real data sets show that the proposed method can construct a better combined classifier that outperforms the best single classifier in terms of overall classification errors for test data