Peripheral mRNA Expression and Prognostic Significance of Emotional Stress Biomarkers in Metastatic Breast Cancer Patients

Emotional stress is believed to be associated with increased tumor progression. Stress-induced epigenetic modifications can contribute to the severity of disease and poor prognosis in cancer patients. The current study aimed to investigate the expression profiles along with the prognostic significance of psychological stress-related genes in metastatic breast cancer patients, to rationalize the molecular link between emotional stress and cancer progression. We profiled the expression of selected stress-associated genes (5-HTT, NR3C1, OXTR, and FKBP5) in breast cancer including the stress evaluation of all participants using the Questionnaire on Distress in Cancer Patients–short form (QSC-R10). A survival database, the Kaplan–Meier Plotter, was used to explore the prognostic significance of these genes in breast cancer. Our results showed relatively low expressions of 5-HTT (p = 0.02) and OXTR (p = 0.0387) in metastatic breast cancer patients as compared to the non-metastatic group of patients. The expression of NR3C1 was low in tumor grade III as compared to grade II (p = 0.04). Additionally, the expression of NR3C1 was significantly higher in patients with positive estrogen receptor status. However, no significant difference was found regarding FKBP5 expression in breast cancer. The results suggest a potential implication of these genes in breast cancer pathology and prognosis.     

Heavy metal bioaccumulation by cultivated Agaricus bisporus from artificially enriched substrates

 Cultivated Agaricus bisporus possess the ability to bioaccumulate seven heavy metals (Pb, Cd, Hg, Fe, Cu, Mn, and Zn). The cultivated champignon mushroom A. bisporus was grown in soil composts of 16 different compositions. An edible mushroom, A. bisporus was also cultivated on humic compost artificially fortified with the seven heavy metals at five different concentrations (0.1 mg/kg, 0.5 mg/kg, 1.0 mg/kg, 3.0 mg/kg, and 10.0 mg/kg) and on control substrate (0 mg/kg) on a dry weight basis. The method of measuring bioaccumulation was flame atomic absorption spectrophotometry. Received: 1 October 1997 / Revised version: 19 January 1998     

Effects of Penicillium roqueforti and whey cheese on gross composition,microbiology and proteolysis of mould‐ripened Civil cheese during ripening

Four different types of mould‐ripened Civil cheese were manufactured. A defined (nontoxigenic) strain of a Penicillium roqueforti (SC 509) was used as the secondary starter with and without addition of the whey cheese (Lor); in parallel, secondary starter‐free counterparts were manufactured. Chemical composition, microbiology and proteolysis were studied during the ripening. The incorporation of whey cheese in the manufacture of mould‐ripened Civil cheese altered the gross composition and adversely affected proteolysis in the cheeses. The inoculated P. roqueforti moulds appeared to grow slowly on those cheeses, and little proteolysis was evident in all cheese treatments during the first 90 days of ripening. However, sharp increases in the soluble nitrogen fractions were observed in all cheeses after 90 days. Microbiological analysis showed that the microbial counts in the cheeses were at high levels at the beginning of ripening, while their counts decreased approximately 1–2 log cfu/g towards the end of ripening.     

Occurrence of phthalate metabolites in human urine from several Asian countries

The occurrence of 14 phthalate metabolites was found in human urine samples collected from seven Asian countries: China, India, Japan, Korea, Kuwait, Malaysia, and Vietnam. Phthalate metabolites were found in all samples, indicating widespread exposure of humans to phthalates in these Asian countries. The highest total (the sum of 14 phthalates) phthalate metabolite concentrations were found in samples collected from Kuwait (median: 1050 ng/mL), followed in decreasing order by samples from India (389 ng/mL), China (234 ng/mL), Vietnam (133 ng/mL), Japan (120 ng/mL), Korea (117 ng/mL), and Malaysia (94.9 ng/mL). The creatinine-adjusted median concentrations of total phthalates for urine samples from Kuwait, India, China, Vietnam, Japan, Korea, and Malaysia were 692, 506, 289, 119, 103, 104, and 169 μg/g creatinine, respectively. Monomethyl phthalate (mMP), monoethyl phthalate (mEP), mono (2-isobutyl phthalate) (miBP), mono-n-butyl phthalate (mBP), and metabolites of di-(2-ethylhexyl) phthalate (DEHP) were the dominant compounds, collectively accounting for >95% of the total concentrations in the samples from the seven countries. The profiles of urinary phthalate metabolite concentrations varied among the samples collected from the seven countries. Urine samples from Kuwait contained the highest concentrations of mEP (median: 391 ng/mL), mBP (94.1 ng/mL), and the metabolites of DEHP (202 ng/mL), whereas samples from China and Japan contained the highest concentrations of miBP (50.8 ng/mL) and mMP (17.5 ng/mL), respectively. mEP was the predominant metabolite in urine samples from India and Kuwait (accounting for 49% of the total), mBP and miBP were the predominant compounds in samples from China (52%), and DEHP metabolites were the predominant compounds in samples from Korea (46%) and Vietnam (52%). Based on the urinary concentrations of mEP, mBP, miBP, and DEHP metabolites of the samples from the seven Asian countries, we estimated daily intake rates of diethyl phthalate (DEP), dibutyl phthalate (DBP), and DEHP. The results indicated that people in the seven Asian countries are exposed to DEP, DBP, and DEHP at levels well below the reference doses (RfD) suggested as unsafe by the U.S. Environmental Protection Agency (EPA). The estimated exposure doses to DEHP in Kuwait, however, were above the RfD recommended by the EPA.     

Diversity and functional characteristics of lactic acid bacteria from traditional kefir grains

Traditional kefir grains were collected from distinct parts of Turkey, and their microbial profile was determined. A wide bacterial biota was observed formed by distinct lactic acid bacteria (LAB) in which Lactococcus lactis strains appeared to be dominant. Yeast species were also identified in kefir grains. Significant levels of antifungal and antibacterial activities were monitored in kefir isolates. All tested LAB produced an exopolysaccharide (EPS) containing glucose and galactose, and some strains formed a fructan‐type EPS. Importantly, low levels of antibiotic resistance were observed among the kefir isolates.     

Exploiting SSDs in operational multiversion databases

Multiversion databases store both current and historical data. Rows are typically annotated with timestamps representing the period when the row is/was valid. We develop novel techniques to reduce index maintenance in multiversion databases, so that indexes can be used effectively for analytical queries over current data without being a heavy burden on transaction throughput. To achieve this end, we re-design persistent index data structures in the storage hierarchy to employ an extra level of indirection. The indirection level is stored on solid-state disks that can support very fast random I/Os, so that traversing the extra level of indirection incurs a relatively small overhead. The extra level of indirection dramatically reduces the number of magnetic disk I/Os that are needed for index updates and localizes maintenance to indexes on updated attributes. Additionally, we batch insertions within the indirection layer in order to reduce physical disk I/Os for indexing new records. In this work, we further exploit SSDs by introducing novel DeltaBlock techniques for storing the recent changes to data on SSDs. Using our DeltaBlock, we propose an efficient method to periodically flush the recently changed data from SSDs to HDDs such that, on the one hand, we keep track of every change (or delta) for every record, and, on the other hand, we avoid redundantly storing the unchanged portion of updated records. By reducing the index maintenance overhead on transactions, we enable operational data stores to create more indexes to support queries. We have developed a prototype of our indirection proposal by extending the widely used generalized search tree open-source project, which is also employed in PostgreSQL. Our working implementation demonstrates that we can significantly reduce index maintenance and/or query processing cost by a factor of 3. For the insertion of new records, our novel batching technique can save up to 90 % of the insertion time. For updates, our prototype demonstrates that we can significantly reduce the database size by up to 80 % even with a modest space allocated for DeltaBlocks on SSDs.     

Effect of pre‐germination time of brown rice on serum cholesterol levels of hypercholesterolaemic rats

BACKGROUND: Brown rice is unpolished rice with immeasurable benefits for human health. Brown rice (BR) and pre‐germinated brown rice (PGBR) are known to contain various functional compounds such as γ‐oryzanol, dietary fibre and γ‐aminobutyric acid (GABA). In the present study, the experimental diets containing BR and PGBR (24, 48 h pre‐germination) were used to investigate the influence of pre‐germination time of brown rice on blood cholesterol in Sprague–Dawley male rats. RESULTS: Hypercholesterolaemia and elevation of LDL‐cholesterol were successfully ameliorated by the experimental diets containing BR and PGBR (24 and 48 h pre‐germination). As compared to the control sample, the pre‐germination time had a significant (P < 0.05) effect on blood cholesterol of Sprague–Dawley male rats. It was also found that the significantly (P < 0.05) better effect on lipid profile of hypercholesterolaemic rats was observed by prolonging the pre‐germination time. As compared to non‐germinated brown rice, the germinated brown rice showed the higher cardio‐protective effect on hypercholesterolaemic Sprague–Dawley male rats. CONCLUSION: The present study suggests that the changes of blood cholesterol can be mainly modulated by using the PGBR rather than BR. The prolonging of pre‐germination time led to an increase in the bioactive components, thereby providing a more efficient functional diet affecting the high blood cholesterol. This study suggests that PGBR can be used instead of BR and polished rice in the human diet. Copyright © 2009 Society of Chemical Industry