Multi-grid domain decomposition approach for solution of Navier–Stokes equations in primitive variable form

A new multi-grid (two-grid) pseudospectral element method has been carried out for solution of incompressible flow in terms of primitive variable formulation. The main objective of the proposed method is to apply the multi-grid technique solving the incompressible flow problems associated with three commonly encountered multi-grid environments. In domain decomposition terminology, it includes (I) partially overlapped subdomains, each of which has same types of grids; (II) partially overlapped subdomains, each of which has different types of grids; (III) local adaptive subdomains fully overlapped with the original computational domain (composite grids). The approach for flow problems, complex geometry or not, is to first divide the computational domain into a number of subdomains with the inter-overlapping area (partially or fully overlapped). In categories I and II, the fine-grid or coarse-grid subdomains can be defined by their representation, while in category III the fine-grid or coarse-grid subdomains are defined as usual. Next, implement the Schwarz Alternating Procedure (SAP) to exchange the data among subdomains, where the coarse-grid correction is used to remove the high frequency error that occurs when the data interpolation from the fine-grid subdomain to the coarse-grid subdomain is conducted. The strategy behind the coarse-grid correction is to adopt the operator of the divergence of velocity field, which intrinsically links the pressure equation, into this process. The solution of each subdomain can be efficiently solved by the direct (or iterative) eigenfunction expansion technique or preconditioned method with the least storage requirement, i.e. O(N²) in 2-D. Numerical results of (i) driven cavity flow (Re = 100,400) with Cartesian grids (category I) in each subdomain, (ii) driven cavity flow (Re = 3200) with local adaptive grids (category III) in each subdomain, and (iii) flow over a cylinder (Re = 250) with ‘O’ grids in one subdomain and Cartesian grids in another (category II) will be presented in the paper to account for the versatility of the proposed multi-grid method.     

To secure XML documents with the extension function of XSLT

XSLT is a very popular and flexible language for transforming XML documents which provides a powerful implementation of a tree‐oriented transformation language for transmuting instances of XML using a single vocabulary into a desired output. In this paper, we propose a processing model that enables the XSLT processor to encrypt and decrypt XML documents. The details of the implementation are presented. Our model supports a more general encryption scope than previous models. The implementation and experimental results demonstrate the practicality of the proposed model. Copyright © 2006 John Wiley & Sons, Ltd.     

Role of HMOX1 Promoter Genetic Variants in Chemoresistance and Chemotherapy Induced Neutropenia in Children with Acute Lymphoblastic Leukemia

Whilst the survival rates of childhood acute lymphoblastic leukemia (ALL) have increased remarkably over the last decades, the therapy resistance and toxicity are still the major causes of treatment failure. It was shown that overexpression of heme oxygenase-1 (HO-1) promotes proliferation and chemoresistance of cancer cells. In humans, the HO-1 gene (HMOX1) expression is modulated by two polymorphisms in the promoter region: (GT)n-length polymorphism and single-nucleotide polymorphism (SNP) A(−413)T, with short GT repeat sequences and 413-A variants linked to an increased HO-1 inducibility. We found that the short alleles are significantly more frequent in ALL patients in comparison to the control group, and that their presence may be associated with a higher risk of treatment failure, reflecting the role of HO-1 in chemoresistance. We also observed that the presence of short alleles may predispose to develop chemotherapy-induced neutropenia. In case of SNP, the 413-T variant co-segregated with short or long alleles, while 413-A almost selectively co-segregated with long alleles, hence it is not possible to determine if SNPs are actually of phenotypic significance. Our results suggest that HO-1 can be a potential target to overcome the treatment failure in ALL patients.     

Inhibitors of Cyclin-Dependent Kinases: Types and Their Mechanism of Action

Recent studies on cyclin-dependent kinase (CDK) inhibitors have revealed that small molecule drugs have become very attractive for the treatment of cancer and neurodegenerative disorders. Most CDK inhibitors have been developed to target the ATP binding pocket. However, CDK kinases possess a very similar catalytic domain and three-dimensional structure. These features make it difficult to achieve required selectivity. Therefore, inhibitors which bind outside the ATP binding site present a great interest in the biomedical field, both from the fundamental point of view and for the wide range of their potential applications. This review tries to explain whether the ATP competitive inhibitors are still an option for future research, and highlights alternative approaches to discover more selective and potent small molecule inhibitors.     

Subcellular Localization of Acyl-CoA: Lysophosphatidylethanolamine Acyltransferases (LPEATs) and the Effects of Knocking-Out and Overexpression of Their Genes on Autophagy Markers Level and Life Span of A. thaliana

Arabidopsis thaliana possesses two acyl-CoA:lysophosphatidylethanolamine acyltransferases, LPEAT1 and LPEAT2, which are encoded by At1g80950 and At2g45670 genes, respectively. Both single lpeat2 mutant and double lpeat1 lpeat2 mutant plants exhibit a variety of conspicuous phenotypes, including dwarfed growth. Confocal microscopic analysis of tobacco suspension-cultured cells transiently transformed with green fluorescent protein-tagged versions of LPEAT1 or LPEAT2 revealed that LPEAT1 is localized to the endoplasmic reticulum (ER), whereas LPEAT2 is localized to both Golgi and late endosomes. Considering that the primary product of the reaction catalyzed by LPEATs is phosphatidylethanolamine, which is known to be covalently conjugated with autophagy-related protein ATG8 during a key step of the formation of autophagosomes, we investigated the requirements for LPEATs to engage in autophagic activity in Arabidopsis. Knocking out of either or both LPEAT genes led to enhanced accumulation of the autophagic adaptor protein NBR1 and decreased levels of both ATG8a mRNA and total ATG8 protein. Moreover, we detected significantly fewer membrane objects in the vacuoles of lpeat1 lpeat2 double mutant mesophyll cells than in vacuoles of control plants. However, contrary to what has been reported on autophagy deficient plants, the lpeat mutants displayed a prolonged life span compared to wild type, including delayed senescence.