Polarization Transfer from Ligands Hyperpolarized by Dissolution Dynamic Nuclear Polarization for Screening in Drug Discovery

Nuclear magnetic resonance (NMR) spectroscopy is a valuable technique for ligand screening, because it exhibits high specificity toward chemical structure and interactions. Dissolution dynamic nuclear polarization (DNP) is a recent advance in NMR methodology that enables the creation of non‐equilibrium spin states, which can dramatically increase NMR sensitivity. Here, the transfer of such spin polarization from hyperpolarized ligand to protein is observed. Mixing hyperpolarized benzamidine with the serine protease trypsin, a “fingerprint” of enhanced protein signals is observed, which shows a different intensity profile than the equilibrium NMR spectrum of the protein, but coincides closely to the frequency profile of a saturation transfer difference (STD) NMR experiment. The DNP experiment benefits from hyperpolarization and enables observation of all frequencies in a single, rapid experiment. Based on these merits, it is an interesting alternative to the widely used STD experiment for identification of protein–ligand interactions.     

NMR of insensitive nuclei enhanced by dynamic nuclear polarization

Despite the powerful spectroscopic information it provides, Nuclear Magnetic Resonance (NMR) spectroscopy suffers from a lack of sensitivity, especially when dealing with nuclei other than protons. Even though NMR can be applied in a straightforward manner when dealing with abundant protons of organic molecules, it is very challenging to address biomolecules in low concentration and/or many other nuclei of the periodic table that do not provide as intense signals as protons. Dynamic Nuclear Polarization (DNP) is an important technique that provides a way to dramatically increase signal intensities in NMR. It consists in transferring the very high electron spin polarization of paramagnetic centers (usually at low temperature) to the surrounding nuclear spins with appropriate microwave irradiation. DNP can lead to an enhancement of the nuclear spin polarization by up to four orders of magnitude. We present in this article some basic concepts of DNP, describe the DNP apparatus at EPFL, and illustrate the interest of the technique for chemical applications by reporting recent measurements of the kinetics of complexation of 89Y by the DOTAM ligand.     

Topical Developments in High-Field Dynamic Nuclear Polarization

We report our recent efforts directed at improving high-field dynamic nuclear polarization (DNP) experiments. We investigated a series of thiourea nitroxide radicals and the associated DNP enhancements ranging from ε=25 to 82, which demonstrate the impact of molecular structure on performance. We directly polarized low-gamma nuclei, including ¹³C, ²H, and ¹⁷O, by the cross effect mechanism using trityl radicals as a polarization agent. We discuss a variety of sample preparation techniques for DNP with emphasis on the benefits of methods that do not use a glass-forming cryoprotecting matrix. Lastly, we describe a corrugated waveguide for use in a 700 MHz/460 GHz DNP system that improves microwave delivery and increases enhancements up to 50 %.     

Drug Screening Boosted by Hyperpolarized Long‐Lived States in NMR

Transverse and longitudinal relaxation times (T_1ρ and T₁) have been widely exploited in NMR to probe the binding of ligands and putative drugs to target proteins. We have shown recently that long‐lived states (LLS) can be more sensitive to ligand binding. LLS can be excited if the ligand comprises at least two coupled spins. Herein we broaden the scope of ligand screening by LLS to arbitrary ligands by covalent attachment of a functional group, which comprises a pair of coupled protons that are isolated from neighboring magnetic nuclei. The resulting functionalized ligands have longitudinal relaxation times T₁(¹H) that are sufficiently long to allow the powerful combination of LLS with dissolution dynamic nuclear polarization (D‐DNP). Hyperpolarized weak “spy ligands” can be displaced by high‐affinity competitors. Hyperpolarized LLS allow one to decrease both protein and ligand concentrations to micromolar levels and to significantly increase sample throughput.     

Targetable Tetrazine-Based Dynamic Nuclear Polarization Agents for Biological Systems

Dynamic nuclear polarization (DNP) has shown great promise as a tool to enhance the nuclear magnetic resonance signals of proteins in the cellular environment. As sensitivity increases, the ability to select and efficiently polarize a specific macromolecule over the cellular background has become desirable. Herein, we address this need and present a tetrazine-based DNP agent that can be targeted selectively to proteins containing the unnatural amino acid (UAA) norbornene-lysine. This UAA can be introduced efficiently into the cellular milieu by genetic means. Our approach is bio-orthogonal and easily adaptable to any protein of interest. We illustrate the scope of our methodology and investigate the DNP transfer mechanisms in several biological systems. Our results shed light on the complex polarization-transfer pathways in targeted DNP and ultimately pave the way to selective DNP-enhanced NMR spectroscopy in both bacterial and mammalian cells.     

High‐resolution 13C–nuclear magnetic resonance study of heterogeneous amorphous polymers

The combination of solid‐state nuclear magnetic resonance (NMR) techniques is very helpful for examining the behavior of heterogeneous amorphous polymers. With the magic‐angle spinning (MAS) technique, employing special conditions, only the mobile fraction of the molecule can be assigned. Cross‐polarization magic‐angle spinning (CPMAS) permits the evaluation of changes in the NMR line shapes and chemical shifts. The employment of proton spin‐lattice relaxation times (T₁ and T₁ρ) gives useful information on the molecular dynamic in heterogeneous polymers. From these parameters the response of the molecular mobility behavior of the polymer chains can be obtained. The results of the present work are discussed in this article in terms of molecular mobility and domain formations of heterogeneous amorphous polymers in order to understand the relations in the structure–mobility property. © 2002 Wiley Periodicals, Inc. J Appl Polym Sci 87: 473–476, 2003     

An investigation of coal by means of e.s.r., 1H n.m.r., 13C n.m.r. and dynamic nuclear polarization

Sixty coal samples of different rank and origin have been investigated by means of e.s.r., ¹H n.m.r. and ¹³C n.m.r., the last two in combination with dynamic nuclear polarization (DNP). The following parameters have been determined: the number of free radicals, the e.s.r. linewidth, the ¹H Zeeman relaxation rate, the ¹H relaxation rate in the rotating frame, the ¹H DNP enhancement, the ¹³C DNP enhancement, the ¹³C Zeeman relaxation rate and the ¹³C aromaticity, observed via ¹H¹³C cross-polarization (CP), both with and without magic-angle spinning (MAS). The relations between these parameters and coal rank have been investigated. Moreover, with DNP special experiments have been performed which provide information about the localization and the mobility of the unpaired electrons present in these coals. Finally, DNP has been used to investigate various features of the quantitative analysis of coal via ¹³C n.m.r. MAS was found to reduce the measured ¹³C aromaticity, and for three coals it was shown that even without MAS only ≈ 50% of the aromatic ¹³C nuclei are detected by the CP technique.     

Solid state 19F NMR study of crystal transformation in PVDF and its nanocomposites

The polymorphism of poly(vinylidene fluoride) (PVDF) and its nanocomposites was studied by means of solid state nuclear magnetic resonance spectroscopy. ¹³C cross polarization magic angle spinning (¹³C CP MAS) NMR spectra were recorded using simultaneous high‐power decoupling on both the proton and fluorine channels. Both ¹H → ¹³C and ¹⁹F → ¹³C CP experiments were conducted, giving identical results apart from intensity variations due to the CP efficiency. Two main resonances for the CF₂ and the CH₂ groups were observed for both neat PVDF (PVDF‐C0) and the nanocomposite containing 2 wt% clay (PVDF‐C2) samples. ¹⁹F CP MAS spectra were obtained from long proton spin‐lock experiments with a shorter contact time. The results showed two strong resonances at ?84 and ?98 ppm with equal intensities, representing the α‐form crystalline structure of PVDF. It was shown that the clay induces the crystallization of PVDF in β‐form. Our earlier investigations using thermal analysis and X‐ray scattering methods also showed crystal transformation of PVDF in its clay nanocomposites. POLYM. ENG. SCI. 46:1684–1690, 2006. © 2006 Society of Plastics Engineers     

Photo-Induced Spin Dynamics in Semiconductor Quantum Wells

We experimentally investigate the dynamics of spins in GaAs quantum wells under applied electric bias by photoluminescence (PL) measurements excited with circularly polarized light. The bias-dependent circular polarization of PL (P _PL) with and without magnetic field is studied. The P _PL without magnetic field is found to be decayed with an enhancement of increasing the strength of the negative bias. However, P _PL in a transverse magnetic field shows oscillations under an electric bias, indicating that the precession of electron spin occurs in quantum wells. The results are discussed based on the electron–hole exchange interaction in the electric field.     

An introduction to NMR

Nuclear magentic resonance (NMR) is a physical method for exploring the magnetic environment of the atomic nuclei of the atoms in a molecule. The substance is placed in a strong magnetic field and the nuclei take on an orientation with respect to this field. The reason for this is that the nuclei have angular momentum (spin) and, being charged, have magnetic moments like small compass needles. By subtle radio-frequency (r-f) techniques the nuclei are simply made to reorient (resonate) in this field. The reorientation involves a change of energy, which is supplied by the r-f quantum,hv. The frequency of resonance is therefore proportional to the reorienta tion energy and hence to the magnetic field in which the nucleus is found. As in other forms of spectro-scopy, the width of the absorption line depends on a One of 10 papers to be published from the Symposium “Nuclear Magnetic Resonance” presented at the AOCS Meeting, Minneapolis, October 1969.     

Vibrational and NMR properties of polyynes

The bond-stretching phonon modes of linear polyynes with hydrogen atom termination at the both ends are calculated as a function of chain length within the density functional theory. The frequency of one of two particular Raman active phonon modes monotonically decreases with the increase of polyyne chain length while that of the other one shows an oscillating behavior, consistent with previous Raman measurements. The relative Raman intensity of the two phonon modes are evaluated by optimized geometries for ground states and excited states. We also present a nuclear magnetic resonance (NMR) calculation for spin–spin coupling constants as a function of distance between hydrogen and carbon-13 nuclei and, within carbon-13 nuclei, up to the polyyne center of symmetry. We compare the calculated results with recent NMR experiments.     

Quantum interference effect in electron tunneling through a quantum-dot-ring spin valve

Spin-dependent transport through a quantum-dot (QD) ring coupled to ferromagnetic leads with noncollinear magnetizations is studied theoretically. Tunneling current, current spin polarization and tunnel magnetoresistance (TMR) as functions of the bias voltage and the direct coupling strength between the two leads are analyzed by the nonequilibrium Green's function technique. It is shown that the magnitudes of these quantities are sensitive to the relative angle between the leads' magnetic moments and the quantum interference effect originated from the inter-lead coupling. We pay particular attention on the Coulomb blockade regime and find the relative current magnitudes of different magnetization angles can be reversed by tuning the inter-lead coupling strength, resulting in sign change of the TMR. For large enough inter-lead coupling strength, the current spin polarizations for parallel and antiparallel magnetic configurations will approach to unit and zero, respectively.     

Application of parahydrogen induced polarization techniques in NMR spectroscopy and imaging

Magnetic resonance provides a versatile platform that allows scientists to examine many different types of phenomena. However, the sensitivity of both NMR spectroscopy and MRI is low because the detected signal strength depends on the population difference that exists between the probed nuclear spin states in a magnetic field. This population difference increases with the strength of the interacting magnetic field and decreases with measurement temperature. In contrast, hyperpolarization methods that chemically introduce parahydrogen (a spin isomer of hydrogen with antiparallel spins that form a singlet) based on the traditional parahydrogen induced polarization (PHIP) approach tackle this sensitivity problem with dramatic results. In recent years, the potential of this method for MRI has been recognized, and its impact on medical diagnosis is starting to be realized. In this Account, we describe the use of parahydrogen to hyperpolarize a suitable substrate. This process normally involves the introduction of a molecule of parahydrogen into a target to create large population differences between nuclear spin states. The reaction of parahydrogen breaks the original magnetic symmetry and overcomes the selection rules that prevent both NMR observation and parahydrogen/orthohydrogen interconversion, yielding access to the normally invisible hyperpolarization associated with parahydrogen. Therefore the NMR or MRI measurement delivers a marked increase in the detected signal strength over the normal Boltzmann-population derived result. Consequently, measurements can be made which would otherwise be impossible. This approach was pioneered by Weitekamp, Bargon, and Eisenberg, in the late 1980s. Since 1993, we have used this technique in York to study reaction mechanisms and to characterize normally invisible inorganic species. We also describe signal amplification by reversible exchange (SABRE), an alternative route to sensitize molecules without directly incorporating a molecule of parahydrogen. This approach widens the applicability of PHIP methods and the range of materials that can be hyperpolarized. In this Account we describe our parahydrogen studies in York over the last 20 years and place them in a wider context. We describe the characterization of organometallic reaction intermediates including those involved in catalytic reactions, either with or without hydride ligands. The collection of spectroscopic and kinetic data with rapid inverse detection methods has proved to be particularly informative. We can see enhanced signals for the organic products of catalytic reactions that are linked directly to the catalytic intermediates that form them. This method can therefore prove unequivocally that a specific metal complex is involved in a catalytic cycle, thus pinpointing the true route to catalysis. Studies where a pure nuclear spin state is detected show that it is possible to detect all of the analyte molecules present in a sample using NMR. In addition, we describe methods that achieve the selective detection of these enhanced signals, when set against a strong NMR background such as that of water.     

高分辨率魔角旋转核磁共振技术的应用进展

高分辨率魔角旋转(HR MAS)技术的发展将核磁共振(NMR)应用到半固体、溶胀体系、悬浮体系和粘稠液体。它使这些样品的信号增强、分辨率提高,得到的谱图可以和液体样品的NMR谱相比,可以方便和准确地对谱峰进行指认,提供丰富的分子组成和结构信息。     

Microstructure and texture of hydrated cement-based materials: A proton field cycling relaxometry approach

We show how the measurement of proton nuclear magnetic spin-lattice relaxation as a function of magnetic field strength (and hence nuclear Larmor frequency) can provide reliable information on the microstructure (specific surface area and pore size distribution) throughout the progressive hydration of cement-based materials. We present in details the experimental and theoretical characteristic features of the relaxation dispersion to support an interpretation in terms of coupled solid-liquid relaxation at pore interfaces, surface diffusion, and nuclear paramagnetic relaxation. The measurement does not require any drying temperature modification and is sufficiently fast to be applied continuously during the progressive hydration of the material. Coupling this method with the standard proton nuclear spin relaxation and high resolution NMR allows us to follow the development of micro-scale texture within the material.     

Condition monitoring of a thermally aged hydroxy‐terminated polybutadiene (HTPB)/isophorone diisocyanate (IPDI) elastomer by nuclear magnetic resonance cross‐polarization recovery times

A hydroxy‐terminated polybutadiene (HTPB)/isophorone diisocyanate (IPDI) elastomer is commonly used as propellant binder material. The thermal degradation of the binder is believed to be an important parameter governing the performance of the propellant. The aging of these binders can be monitored by mechanical property measurements, such as modulus or tensile elongation. These techniques, however, are not easily adapted to binder agents that are dispersed throughout a propellant. In this paper we investigated solid‐state nuclear magnetic resonance (NMR) relaxation times as a means to predict the mechanical properties of the binder as a function of aging time. Proton (¹H) spin–lattice and spin–spin relaxation times were insensitive to the degree of thermal degradation of the elastomer. Apparently, these relaxation times depend on localized motions that are only weakly correlated with mechanical properties. A strong correlation was found between the ¹³C cross‐polarization (CP) NMR time constant, T_cp, and the tensile elongation at break of the elastomer as a function of aging time. A ramped‐amplitude CP experiment was less sensitive to imperfections in setting critical instrumental parameters for this mobile material. © 2001 John Wiley & Sons, Inc. J Appl Polym Sci 81: 453–459, 2001     

New tools in bio-NMR: indirect detection of nitrogen-14 in solids

This paper presents an overview of recently developed methods for the indirect detection of 14N nuclei (spin l = 1) in spinning solids by nuclear magnetic resonance spectroscopy. These methods exploit the transfer of coherence from a neighboring 'spy' nucleus with spin S = 1/2, such as 13C or 1H, to single- or double-quantum transitions of 14N nuclei. The two-dimensional correlation methods presented here are closely related to the well-known heteronuclear single- and multiple-quantum correlation (HSQC and HMQC, respectively) experiments, already widely used for the investigation of molecules in liquids. Nitrogen-14 NMR spectra exhibit powder patterns characterized by second- and third-order quadrupolar couplings which can provide important information about structure and dynamics of molecules in powder samples.     

Double Rashba Quantum Dots Ring as a Spin Filter

We theoretically propose a double quantum dots (QDs) ring to filter the electron spin that works due to the Rashba spin–orbit interaction (RSOI) existing inside the QDs, the spin-dependent inter-dot tunneling coupling and the magnetic flux penetrating through the ring. By varying the RSOI-induced phase factor, the magnetic flux and the strength of the spin-dependent inter-dot tunneling coupling, which arises from a constant magnetic field applied on the tunneling junction between the QDs, a 100% spin-polarized conductance can be obtained. We show that both the spin orientations and the magnitude of it can be controlled by adjusting the above-mentioned parameters. The spin filtering effect is robust even in the presence of strong intra-dot Coulomb interactions and arbitrary dot-lead coupling configurations.