Alternative approach for consistent yields of total genomic DNA from cotton (Gossypium hirsutum L.)

A persistent limitation to molecular biological research on cotton (Gossypium spp.) has been the difficulty in isolation of total genomic DNA from the plant tissue. This report describes a reliable strategy for isolation of genomic DNA from cotton. The mini-preparation procedure involves use of lyophilized, etiolated cotyledons and an anion exchange column kit. The isolated DNA had a molecular weight in excess of 50 kb with minimal degradation or shearing. Routine yields ranged from 5 to 7 μg DNA per etiolated cotyledon pair (corresponding to 100 ng/mg dry weight), in contrast to little or no DNA from equivalent amounts of either green cotyledons or mature leaf tissue. The decreased yields from the latter tissues appeared to be correlated with increased afmounts of flavonoid. The DNA was amenable to routine molecular applications as demonstrated by: digestibility with a number of restriction enzymes (Eco RI,HindIII,Sau 3A), and hybridization of a tomato genomic clone containing the gene for S-adenosylmethionine synthetase to a 13.3-kbEco RI fragment of cotton. Using DNA from an isoline immune to root-knot nematodes, we observed no impediment to genomic cloning.     

棉花MADS框蛋白基因(GhMADS1)的克隆

作为转录因子,MADS框蛋白基因在植物花器官发育中有着重要的功能。为研究棉花花器官发育的分子机理,以棉花花器官突变体CHV1(cotton homeotic variant)和徐州142正常植株为材料,利用棉花EST数据库资料,通过EST序列整合,从陆地棉徐州142花蕾中克隆出一个MADS框蛋白的编码区段,GenBank登录号为AF538965。该片段(GhMADS1)长713bp,包含一个711bp的开放阅读框,推导的氨基酸序列(236个氨基酸)与葡萄、烟草、矮牵牛、拟南芥和金鱼草等的AGL2组MADS框蛋白有很高的序列相似性。系统进化分析同样将GhMADS1基因归人AGt2组MADS框蛋白。RT-PCR分析显示,该基因在陆地棉的花瓣、雄蕊、胚珠和纤维中表达,特别是在花瓣中表达量最高,而在根、茎、叶等营养器官和棉花同源异型突变体CHV1(所有花器官均变为苞叶状叶性器官)的变异花蕾中不表达。这些结果说明GhMADS1基因可能在棉花花器官发育中有着重要的功能。     

棉花高频体细胞胚胎发生及再生体系建立

棉花的体细胞胚胎发生率低,限制了转基因棉花的发展。为了扩大可再生棉花的基因型,发展新疆优质棉花的特点,以新疆的主要栽培品种新陆早33为材料,以下胚轴为外植体,使用葡萄糖,麦芽糖作为主要碳源,用Phytagel固化,对不同激素的浓度组合和培养条件进行探索,对棉花胚性愈伤的诱导到体细胞胚胎的发生阶段进行优化,体细胞胚胎成熟以后进行萌发培养可以获得正常的植株。通过试验证明,有利于棉花的愈伤组织生长的激素浓度为KT 0.1 mg/L,2,4-D 0.1 mg/L,下胚轴的中部诱导愈伤形态最好。体细胞胚胎发生阶段以KT,IBA组合,以低盐培养基进行子叶胚的成苗,建立了再生体系。     

陆地棉产量性状QTLs的分子标记及定位

用我国的高产栽培品种泗棉3号和美国栽培品种TM-1为材料,构建F₂和F_2∶3作图群体,应用301对SSR引物和1040个RAPD引物,对产量性状QTLs进行了分子标记筛选,结果共筛选出了37对SSR多态性引物和10个RAPD多态性引物的49个位点,鉴定出了控制产量性状变异的主效QTLs。定位于第9染色体的连锁群,分别具有控制铃重、衣分和籽指的主效QTLs,铃重的2个QTLs分别解释F_2∶3群体表型变异的18.2%和21.0%;在F₂群体检测到的1个衣分QTL解释表型变异的25%,另一个衣分QTL在F₂群体和F_2∶3群体都检测到,解释F₂群体衣分的24.9%的表型变异,解释F_2∶3群体衣分的5.9%的表型变异;在F_2∶3群体铃重的一个QTL的同一位置同时检测到一个籽指QTL,它解释15.6%的表型变异,是一因多效或是紧密连锁的两个QTLs,有待进一步研究。本研究标记的产量性状主效QTLs可用于棉花产量性状的标记辅助选择。     

陆地棉bZIP转录因子响应非生物胁迫表达谱分析

低温、干旱和高盐是影响棉花生长发育和产量的重要限制因素。b ZIP转录因子在植物非生物胁迫反应中起重要作用。本研究利用生物信息学的方法从陆地棉中鉴定了24个b ZIP转录因子基因,命名为Ghb ZIP1~Ghb ZIP24。系统进化树分析表明,这24个家族成员主要聚集在A、B、C、D、E、G、I、S这8类亚家族。通过RT-PCR的方法分析了棉花(Gossypium hirsutum L.)Ghb ZIPs基因在高盐(200 mmol/L Na Cl)、干旱、4℃低温等非生物胁迫处理下的表达模式。结果表明,19个基因响应高盐胁迫、11个基因对干旱胁迫有应答反应,15个基因有冷胁迫应答。此外,有4个基因(Ghb ZIP4、Ghb ZIP7、Ghb ZIP21和Ghb ZIP23)在3种处理下均有应答反应。以上研究结果表明,Ghb ZIPs在陆地棉的非生物胁迫适应过程中可能具有重要的作用。本研究为进一步探索棉花b ZIP转录因子在抗逆反应中的重要作用和利用基因操作手段提高棉花抗逆性提供了重要信息。     

陆地棉优质纤维渐渗系中外源遗传组分的鉴定与分析

鲁原343是一个渐渗了海岛棉优质纤维基因的陆地棉种质,对其渐渗的优质纤维片段进行鉴定,对利用优质纤维渐渗系改良陆地棉品种的纤维品质具有重要意义。本研究以综合性状优良的转基因抗虫棉鲁棉研22号与鲁原343杂交构建作图群体,利用317对SSR引物对鲁原343和鲁棉研22号进行多态性分析,有24对引物表现多态。利用这些引物进一步和TM-1、优质纤维渐渗片段的供体Ash imoun i作比较,初步鉴定出10个SSR位点与海岛棉渐渗有关。利用这些标记分析(鲁棉研22×鲁原343)F2群体的标记基因型和纤维品质性状的关系,6个标记与纤维品质显著相关,涉及到4条染色体。其中与伸长率相关的标记BNL2986(R2=5.87%)和与长度、细度相关的标记NAU751(R2=6.62%,6.01%)同位于16号染色体的连锁群LG1上,标记间距离为17.7 cM;与纤维成熟度相关的标记BNL3590(R2=8.62%)和与成熟度、伸长率相关的标记BNL3971(R2=15.0%,9.79%)位于2号染色体的连锁群LG3上,标记间距离为4.5 cM;与纤维强度相关的标记BNL3279(R2=8.12%)和与细度相关的标记BNL827(R2=13.94%)分别位于LGD02和25号染色体上。     

根癌农杆菌介导的转aroAM12基因棉花植株的草甘膦抗性

以中棉35无菌苗下胚轴为外植体,采用农杆菌介导法将含有通过基因优化技术获得的草甘膦抗性突变基因aroAM12导入棉花中.以aroAM12为选择标记,利用草甘膦直接筛选获得65棵再生植株.PCR和Southerablot分析表明,经过草甘膦筛选出的To代植株均整合有aroAM12基因.Western blot分析表明整合进的aroAM12基因得到了有效表达,且不同植株之间的表达不尽相同.大棚喷洒的实验结果表明To代转化植株具有很高的草甘膦抗性.对T1代棉花的草甘膦抗性遗传分析表明,aroAM12基因以孟德尔方式遗传.     

启动子诱捕在棉花基因组中的功能分析

利用根癌农杆菌介导的遗传转化,将启动子诱捕（Promoter trapping）元件插入到棉花基因组,获得141个独立的转化子,其中97％的转化子经PCR扩增为阳性。不同组织中GUS基因的表达频率为：根部48％,茎的微管组织9．2％,叶5．2％,花51％;同时检测了不同植株中GUS基因的表达模式,发现GUS基因在不同株系的植株间的表达模式呈现较大的差异,有些植株中GUS基因是组织特异表达,有些则是器官特异表达,有些则在多个器官中均有表达。所建立的启动子诱捕系统中的GUS基因高频率、多模式和时空特异性表达为分离基因及其调节序列、开展功能基因组研究奠定了坚实的基础。     

陆地棉原生质体高频率分裂及植株再生

取陆地棉品种（系）３１１８、９５５４和晋棉４号种子无菌苗的下胚轴诱导的愈伤组织,从中挑选具有分化能力的黄色颗粒状愈伤组织,建立胚性细胞悬浮培养系。以纤维素酶和离析软化酶组成的酶液,由细胞悬浮培养物游离原生质体。采用含低融点脂糖的Ｋ３基本培基包埋原生质体的培养方式,获得愈伤组织。以液体－固体－液体轮回培养法改良晋棉４号的细胞悬浮系,原生质体的植板率从２％左右提高到９％以上。在原生质体再生愈伤组织的继     

矮秆陆地棉品种陆矮1号的生长发育特性研究

本研究以矮秆陆地棉品种陆矮1号为材料,以株高正常品系97004H和陆地棉遗传标准系TM-1为对照,通过田间试验,比较研究了不同品种的生长发育规律。结果表明：陆矮1号苗期形态与对照品种无显著差异,随着生育进程株高差异逐渐增大,现蕾后主茎日增长量极显著低于对照品种,日增长高峰与对照品种一致,但高峰期的日增长量则不到对照品种的一半,盛花期以后主茎基本停止生长;最终株高只有对照品种的1／2左右。单株果枝数及主茎伸长节间数显著少于97004H和TM-1,每果枝的果节数及果枝长度与对照相比有极显著差异,主茎第12节以下节间长度与对照品种无显著差异,上部节间显著短于对照品种。株高差异主要发生在盛蕾期以后,由中上部节间缩短引起。陆矮1号生育期较短,结铃部位和成铃时间集中。     

棉花体细胞增殖和胚胎发生中的细胞程序性死亡

棉花组织培养中愈伤组织褐化可能与细胞程序性死亡(PCD)有关.对棉花组培中不同时期的愈伤组织DNA进行琼脂糖电泳,观察到:仅在第一次愈伤组织继代后10 d左右和愈伤组织第一次继代到分化培养基中培养10 d左右,愈伤组织的DNA产生了180 bp左右的片断或其整数倍片断大小的DNA带,呈DNA梯(DNA ladder)状电泳,说明在这两个时期PCD达到了高峰.在这两次PCD高峰后1周均出现愈伤组织大规模的褐化死亡.显微镜观察到第一次PCD发生高峰的愈伤组织存在许多管状、内含物少的细胞,这些细胞分布在愈伤组织的边缘和内部;第二次PCD发生高峰观察到体细胞胚胎分化、PCD细胞的木栓化和水渍化.对体细胞胚胎分化时期的原生质体进行荧光染色(DAPI),荧光显微镜下观察到发生细胞程序性死亡的细胞核浓缩、染色质凝聚、结块、边缘化和形成PCD小体.     

Reddening of Cotton (Gossypium Hirsutum L.) Leaves

Reddening of leaves is a physiological disorder in cotton induced by different abiotic stresses. Dramatic biochemical changes occurred in reddening leaves: strong accumulation of anthocyanins and drop of chlorophyll content, important increase of proline content and peroxidase activity. The lipid peroxide content indicative of membrane fragmentation was decreased. In this way a multicomponent system encompassing anthocyanins, proline, and peroxidase may act coordinately to overcome abiotic stress in cotton.     

棉花细胞核雄性不育两用系差异表达基因分析

应用cDNA-AFLP对棉花ms5ms6双隐性核雄性不育两用系的不育株和可育株花粉发育的3个时期—造孢细胞时期、花粉母细胞时期和花粉粒时期进行对比分析,共得到17个差异表达片段,它们分别属于11种表达模式,其中14个片段可以在NCBI数据库中找到同源序列,功能分析表明这些片段所编码的基因可能参与了信号转导、转录、能量代谢、细胞壁发育等相关过程。Northern杂交结果证明检测片段的表达模式与cDNA-AFLP结果吻合。同时还在可育花药中发现了与玉米T型细胞质雄性不育恢复因子RF2基因高度同源的育性恢复因子类基因。     

Osmotic Adjustment in Cotton (Gossypium hirsutum L.) Leaves and Roots in Response to Water Stress

The relative magnitude of adjustment in osmotic potential (ψ_s) of water-stressed cotton (Gossypium hirsutum L.) leaves and roots was studied using plants raised in pots of sand and grown in a growth chamber. One and three water-stress preconditioning cycles were imposed by withholding water, and the subsequent adjustment in solute potential upon relief of the stress and complete rehydration was monitored with thermocouple psychrometers. Both leaves and roots exhibited a substantial adjustment in ψ_s in response to water stress with the former exhibiting the larger absolute adjustment. The osmotic adjustment of leaves was 0.41 megapascal compared to 0.19 megapascal in the roots. The roots, however, exhibited much larger percentage osmotic adjustments of 46 and 63% in the one and three stress cycles, respectively, compared to 22 and 40% in the leaves in similar stress cycles. The osmotically adjusted condition of leaves and roots decreased after relief of the single cycle stress to about half the initial value within 3 days, and to the well-watered control level within 6 days. In contrast, increasing the number of water-stress preconditioning cycles resulted in significant percentage osmotic adjustment still being present after 6 days in roots but not in the leaves. The decrease in ψ_s of leaves persisted longer in field-grown cotton plants compared to plants of the same age grown in the growth chamber. The advantage of decreased ψ_s in leaves and roots of water-stressed cotton plants was associated with the maintenance of turgor during periods of decreasing water potentials.     

Genotype and Planting Density Effects on Rooting Traits and Yield in Cotton （Gossypium hirsutum L,）

Root density distribution of plants is a major Indicator of competition between plants and determines resource capture from the solh This experiment was conducted in 2005 at Anyang, located in the Yellow River region, Henan Province, China. Three cotton （Gossyplum hlrsutum L.） cultivars were chosen： hybrid Btcultlvar CRI46, conventional Btcultlvars CRI44 and CRI45. Six planting densities were designed, ranging from 1.5 to 12.0 plants/m^2. Root parameters such as surface area, diameter and length were analyzed by using the DT-SCAN Image analysis method. The root length density （RLD）, root average diameter and root area Index （RAI）, root surface area per unit land area, were studied. The results showed that RLD and RAI differed between genotypes; hybrid CRI46 had significantly higher （P 〈0.05） RLD and RAI values than conventlonal cultlvars, especially under low planting densities, less than 3.0 plants/m^2. The root area index （RAI） of hybrid CRI46 was 61% higher than of CRI44 and CRI45 at the flowering stage. The RLD and RAI were also significantly different （P = 0.000） between planting densities. The depth distribution of RAI showed that at Increasing planting densities RAI was Increasingly distributed in the soil layers below 50 cm. The RAI of hybrid CRI46 was for all planting densities, obviously higher than other cultivars during the flowering and boll stages. It was concluded that the hybrid had a strong advantage in root maintenance preventing premature senescence of roots. The root diameter of hybrid CRI46 had a genetically higher root diameter at planting densities lower than 6.0 plants/m^2. Good associations were found between yield and RAI In different stages. The optimum planting density ranged from 4.50 plants/m^2 to 6.75 plants/m^2 for conventional cultlvars and around 4.0-5.0 plants/m^2 for hybrids.     

Transgene integration and organization in Cotton (Gossypium hirsutum L.) genome

While genetically modified upland cotton (Gossypium hirsutum L.) varieties are ranked among the most successful genetically modified organisms (GMO), there is little knowledge on transgene integration in the cotton genome, partly because of the difficulty in obtaining large numbers of transgenic plants. In this study, we analyzed 139 independently derived T0 transgenic cotton plants transformed by Agrobacterium tumefaciens strain AGL1 carrying a binary plasmid pPZP-GFP. It was found by PCR that as many as 31% of the plants had integration of vector backbone sequences. Of the 110 plants with good genomic Southern blot results, 37% had integration of a single T-DNA, 24% had two T-DNA copies and 39% had three or more copies. Multiple copies of the T-DNA existed either as repeats in complex loci or unlinked loci. Our further analysis of two T1 populations showed that segregants with a single T-DNA and no vector sequence could be obtained from T0 plants having multiple T-DNA copies and vector sequence. Out of the 57 T-DNA/T-DNA junctions cloned from complex loci, 27 had canonical T-DNA tandem repeats, the rest (30) had deletions to T-DNAs or had inclusion of vector sequences. Overlapping micro-homology was present for most of the T-DNA/T-DNA junctions (38/57). Right border (RB) ends of the T-DNA were precise while most left border (LB) ends (64%) had truncations to internal border sequences. Sequencing of collinear vector integration outside LB in 33 plants gave evidence that collinear vector sequence was determined in agrobacterium culture. Among the 130 plants with characterized flanking sequences, 12% had the transgene integrated into coding sequences, 12% into repetitive sequences, 7% into rDNAs. Interestingly, 7% had the transgene integrated into chloroplast derived sequences. Nucleotide sequence comparison of target sites in cotton genome before and after T-DNA integration revealed overlapping microhomology between target sites and the T-DNA (8/8), deletions to cotton genome in most cases studied (7/8) and some also had filler sequences (3/8). This information on T-DNA integration in cotton will facilitate functional genomic studies and further crop improvement.     

Effects of Reddening of Cotton (Gossypium hirsutum L.) Leaves on Functional Activity of Photosynthetic Apparatus

Strong inhibition of rates of CO₂ assimilation and transpiration, stomatal conductance, and water use efficiency as well as photosystem 2 (PS2) photochemical activity were related to the severity of reddening. The inhibition of photosynthesis in red cotton leaves was due to both decreased photochemical activity and stomatal limitation. Lowered photosynthetic capacity could be one of the main factors of reduced yield in reddening cotton.