细菌中D-氨基酸生物合成及调控作用研究进展

细菌中普遍存在L/D型氨基酸,与L-氨基酸(L-AAs)不同,D-氨基酸(D-AAs)不参与蛋白质合成,而与细胞壁肽聚糖的合成有关,直接影响细菌细胞壁的形状、数量和强度。D-AAs在细菌表征、药物抑菌性、靶标确定等方面具有重要的作用。目前,外源添加D-AAs参与肽聚糖合成的机制已有一些研究进展,其荧光衍生物已应用于细菌可视化,特异性探测细胞壁形成/重塑、细菌生长和细胞形态。但D-AAs如何影响细菌生长及其抗逆性的机制尚未研究清楚。对D-AAs的研究现状进行综述,重点介绍D-AAs在细菌中的生物合成机制和参与细胞壁合成的机制、非典型DAAs对细菌的调控以及在细菌可视化中的应用,并对D-AAs未来研究方向进行了展望。     

D型氨基酸氧化酶活性对于D-硝基精氨酸手性转化的影响

D-硝基精氨酸(D-NNA)可在大鼠体内发生手性转化生成其L型异构体,即L-NNA,后者可抑制一氧化氮合酶活性,减少一氧化氮生成,升高动脉血压.研究了D型氨基酸氧化酶(DAAO)在D-NNA手性转化中的作用及DAAO对不同(包括已报道在体内可发生手型转化的)D型氨基酸的选择活性.体内实验显示,DAAO的选择性抑制剂苯甲酸钠(400mg/kg)或肌酐(400mg/kg)均可在不同程度上抑制D-NNA升压作用,进一步研究发现,肾脏或肝脏DAAO酶液在外加DAAO后可提高D-NNA的手性转化约2倍,表明DAAO对于D-NNA在体内的手性转化是必需的.DAAO酶液对可在体内发生手性转化且转化率相似(30%～50%)的D型氨基酸(D-Phe,D-Leu和D-NNA)的选择性表现出显著差异(Kcat/Km相差可达约15倍左右),这从另一方面表明体内D-硝基精氨酸氧化是其发生手性转化的前提条件但非决定因素.     

生物转化和手性拆分技术制备D-氨基酸研究进展

在自然界中D-氨基酸相对稀少,被冠以“非天然”氨基酸之称,但D-氨基酸在医药、农药和食品等的组成中起着重要的作用,特别是它们已被用于合成!-内酰胺类抗生素和生理活性肽。综述了通过生物转化和手性拆分技术制备D-氨基酸新进展,希望能为相关研究者和有关企业提供有益的参考。     

荧光假单胞菌TM5-2中D-型氨基酸脱氢酶的鉴定和表达

从荧光假单胞菌TM5-2中得到一个含丙氨酸消旋酶基因的DNA片段(8.8kb),相邻的一个开读框(ORF)与甘氨酸/D-型氨基酸氧化酶基因相似。该ORF经过克隆、表达,并没有检测到甘氨酸/D-型氨基酸氧化酶的活性,推导而得的氨基酸序列与D-型氨基酸脱氢酶序列比较发现,ORF含有D-型氨基酸脱氢酶的所有重要的保守序列。经TTC培养基鉴定,其具有D-型氨基酸脱氢酶的活性,并对一系列D-型氨基酸有作用,最佳作用底物是D-组氨酸。     

三角酵母D-氨基酸氧化酶基因在大肠杆菌中的克隆和表达

从三角酵母中提取总RNA ,反转录后进行PCR扩增得到D 氨基酸氧化酶 (D AminoAcidOxidase ,DAAO)基因 ,经测序可知 ,与文献中三角酵母的DAAO基因序列的同源性在 99%以上。将DAAO基因用NcoⅠ和BamHⅠ双酶切后 ,与相同酶切的大肠杆菌表达载体pET 2 8a连接 ,转化大肠杆菌TOP 1 0F′,并筛选得到重组质粒pET DAAO ,转化BL2 1 (DE3)感受态细胞 ,得到重组大肠杆菌BL2 1 (DE3) pET DAAO。对重组大肠杆菌中的D 氨基酸氧化酶进行了诱导表达 ,考察了诱导温度、菌浓度、诱导剂IPTG用量以及溶氧等因素对酶活的影响。结果表明 ,在 2 8℃、菌浓度 (OD6 0 0 ) 1 0、IPTG浓度 1mmol L时 ,DAAO酶活最高达 2 3 3U mL。研究进一步显示 ,用廉价无毒的乳糖可以替代IPTG进行诱导 ,当乳糖浓度为 2mmol L ,DAAO酶活可达 2 2 7U mL。经过补料分批培养和乳糖诱导 ,DAAO酶活可以达到 1 75U mL。     

细菌生物膜的结构及形成机制研究进展

细菌生物膜是细菌在特定条件下形成的一种特殊细菌群体结构,菌体被包裹在其自身分泌的多聚物中。近年来,有关生物膜组成结构、形成机制、抗逆性机制及其应用防治等诸方面的研究工作进展迅速,本文主要针对细菌生物膜的结构及形成机制方面的研究进展进行了介绍。     

中枢神经系统D-氨基酸氧化酶的研究进展

新近研究证实,哺乳动物神经系统中存在内源性D-氨基酸氧化酶,参与脑内D-氨基酸的代谢.遗传学研究发现,D-氨基酸氧化酶基因与精神分裂症的发生密切相关.分子生物学研究表明,在D-氨基酸氧化酶基因启动子区域存在一些转录因子的结合位点.这些研究结果提示,中枢神经系统的D-氨基酸氧化酶除了参与D-氨基酸的代谢以外,可能还具有其它的生理功能.本文就中枢神经系统D-氨基酸氧化酶的研究进展作一综述.     

三角酵母菌D-氨基酸氧化酶的纯化和一些基本性质的研究

1．比较了17株霉菌和36株酵母菌的D-氨基酸氧化酶活力,其中以三角酵母的酶活力最高,比较适宜作为研究D-氨基酸氧化酶的材料。 2．用硫酸铵、聚乙二醇(PEG 6000)分部沉淀,Sephadcx G-200、羟基磷灰石柱层析分离纯化了三角酵母D-氨基酸氧化酶,聚丙烯酰胺凝胶电泳为单一组份。 以聚丙烯酰胺凝股梯度浓度电泳测得D-氢基酸氧化酶的分子量为170,000,sDs凝胶电泳测得其亚基分子量为42,000,表明三角酵母D-氨基酸氧化酶由四个相同亚基组或。 3．三角酵母D-氨基酸氧化酶在以D-丙氨酸为底物时,最适pH为8．3,米氏常数(Km)为3．3mM。三角酵母D-氨基酸氧化酶具有较宽的底物专一性,多种D或DL型氨基酸都可以做它的底物。     

氨基酸L-和D-异构体对离体小麦胚植株生长的影响

5种氨基酸L-和D-异构体对离体小麦胚植株生长的影响结果表明,在1~7 mmol.L-1浓度范围内,脯氨酸异构体均不抑制植株生长;缬氨酸和蛋氨酸的L-型严重抑制生长,D-型不抑制或轻微抑制;丙氨酸则相反,L-型无抑制作用,D-型是严重抑制类型;丝氨酸的L-型轻微抑制生长,D-型严重抑制生长。生长结果也表明,DL-异构体的抑制作用介于D-型和L-型之间。     

D- 型氨基酸氧化酶抑制剂的发展

D-型氨基酸氧化酶(D-Amino acid oxidase,DAAO)抑制剂可以阻止D-型氨基酸(主要是D-型丝氨酸)的降解和过氧化氢的生成,在治疗精神分裂症阴性症状和认知障碍与镇痛等方面均表现出较好的疗效。从第一个DAAO抑制剂芳香羧酸类的苯甲酸到经过烯醇互变的α-羟基酮喹类抑制剂喹诺林-2,3-二酮,DAAO抑制剂结构上总共经历了3代变化,抑制剂与酶之间的相互作用模式逐渐加强,其抑制活性升高了数万倍,脂溶性增加,酸性减弱,理化性质逐渐优化。本文就近10年DAAO抑制剂的结构发展与生物活性之间的关系进行综述。     

In vitro study of the metabolic effects of D-amino acids

While the L -configuration of amino acids predominates in all known living systems, D -enantiomers of amino acids have been detected with highly sensitive chromatographic techniques in human physiological fluids. In the present study, the survival of Chinese hamster ovary cells (CHO) and HeLa cells was inhibited by exposure to high concentrations of some D - or L -amino acids. Inhibition of colony formation, though, was not necessarily observed to be chiral-dependent. Some L -amino acids (L AAS) were found to be toxic while other D -amino acids (D AAS) were innocuous in both cultures. This is contradictory to the previous observations that D AAS were generally considered to be harmful. Frequently it was implied, although not experimentally proven, that the L AAS were not toxic. One of the metabolites produced by oxidative deamination of D - or L AAS is hydrogen peroxide (H₂O₂), a reactive oxygen species (ROS) that is decomposed by catalase. Increased intracellular H₂O₂ can result in peroxidation of lipids. We measured catalase activity and the lipid peroxide levels (LPO) after incubating cells in either D - or L AAS. The amino acids (AAS) that were found to inhibit colony formation were found to be associated with higher levels of catalase activity and LPO. Therefore, we hypothesize that enhanced ROS generation may be, in part, responsible for the observed toxicity of some amino acids. © 1996 Wiley-Liss, Inc.     

Filament formation inThermus species in the presence of some D-amino acids or glycine

A number of strains ofThermus spp. changed morphology from rods of about 6 to 8 m long to multicellular filaments (unsheathed trichomes) up to many hundreds of micrometres long with the addition of glycine or certain D-amino acids to the growth medium. Associated with this change was the formation of braided trichomes and occasionally true knots. Filament formation was reversible by the removal of the causal agent, but only if growth was possible. Electron microscopy suggested that the wall structure was not changed, but only that cells did not separate due to the continuous nature of the outer membrane layer. The filaments were thus multicellular. The constituent cells were similar in length to the normal rod-shaped cells. Filament formation byThermus spp. may have applications in industrial scale culture of these extracellular enzymeproducing thermophilic bacteria.     

Factors controlling the level and determination of D-amino acids in the urine and plasma of laboratory rodents

Summary Unambiguous methodologies were developed for the accurate and reproducible determination of specific D-amino acids in the physiological fluids of common laboratory rodents. Depending on the strain of rodent and the type of amino acid examined, excreted D-amino acids ranged from the low percent levels to over 40 percent of the total specific amino acid level. Relative plasma levels tended to be considerably lower, typically an order of magnitude less. A number of factors were found to alter the relative amounts of excreted D-amino acids. This included: diet, age, pregnancy, advanced cancer, and antibiotics. The two factors that seemed to result in substantially lower levels of excreted D-amino acids were fasting and young age. Pregnancy was the only factor that consistently resulted in higher relative D-amino acid excretion. Much of the observed data are believed to be related to the efficiency with which the kidney reabsorbs L-amino acids. No claims are made as to the meaning and/or importance of free D-amino acids in regards to pathology, age, clinical usefulness and so forth. However, a knowledge of normal D-amino acid levels and dynamics is necessary before it is possible to identify perturbations caused by either natural or pathological conditions. The techniques are now available that should allow these topics to be addressed properly.On leave from Kyungpook National University in Korea.On leave from Institute of Physical Sciences, Polish Academy of Sciences.     

Synthesis and characterisation of D-amino acid-based oligopeptides for use as probes of the influence of molecular structure on the paracellular route of gastrointestinal drug uptake

Summary A series of peptides based on D-amino-acids, and with an N-terminal D-phenylalanine residue, was synthesised by solution methods using t-butoxycarbonyl amino protection. These peptides were designed to resist metabolism in the gastrointestinal tract and to serve as probes of the effects of molecular shape and charge on the paracellular route of drug uptake in the gut. The peptides were characterised by NMR spectroscopy, FAB mass spectrometry, optical rotation and purified by HPLC.Abbreviations HBTU o-Benzotriazolyl-tetramethyluronium hexafluorophosphate - OSu N-hydroxysuccinimide ester     

Chromatographic determination of L- and D-amino acids in plants

Quantities of free L- and D-amino acids (L- and D-AAs) in plants (leaves of coniferous and decidious trees, fleshy fruits, leaf blades of fodder grasses, and seeds and seedlings of edible legumes) were determined. Amino acid (AA) enantiomers were converted into diastereomers using pre-column derivatization with o-phthaldialdehyde together with N-isobutyryl-L(or D)-cysteine followed by separation of the resulting fluorescent isoindol derivatives on an octadecylsilyl stationary phase using high-performance liquid chromatography. Relative amounts of D-AAs were also determined by enantioselective gas chromatography-mass spectrometry on Chirasil-L-Val. Free D-AAs acids in the range of about 0.2% up to 8% relative to the corresponding L-AAs acids were found in plants. D-Asp, D-Asn, D-Glu, D-Gln, D-Ser and D-Ala could be detected in most of the plants, and D-Pro, D-Val, D-Leu and D-Lys in certain plants. As D-AAs were detected in gymnosperms as well as mono- and dicotyledonous angiosperms of major plant families it is concluded that free D-AAs in the low percentage range are principle constituents of plants.     

Metabolic regulatory mechanisms and physiological roles of functional amino acids and their applications in yeast

ABSTRACT

In yeast, amino acid metabolism and its regulatory mechanisms vary under different growth environments by regulating anabolic and catabolic processes, including uptake and export, and the metabolic styles form a complicated but robust network. There is also crosstalk with various metabolic pathways, products and signal molecules. The elucidation of metabolic regulatory mechanisms and physiological roles is important fundamental research for understanding life phenomenon. In terms of industrial application, the control of amino acid composition and content is expected to contribute to an improvement in productivity, and to add to the value of fermented foods, alcoholic beverages, bioethanol, and other valuable compounds (proteins and amino acids, etc.). This review article mainly describes our research in constructing yeast strains with high functionality, focused on the metabolic regulatory mechanisms and physiological roles of “functional amino acids”, such as l-proline, l-arginine, l-leucine, l-valine, l-cysteine, and l-methionine, found in yeast.     

Identification of avidin and streptavidin binding motifs among peptides selected from a synthetic peptide library consisting solely of D-amino acids

Peptides consisting solely of D -amino acids (D -peptides) as opposed to their L -counterparts (L -peptides) are resistant towards proteolytic degradation in the organism and may therefore be useful in future efforts to develop new stable peptide-based drugs. Using the random synthetic peptide library technique several L - and D -peptides, capable of binding to both avidin and streptavidin, were found. The L -peptides contained the previously described HPQ/M motifis, and among the D -peptides three binding motifs could be identified, of which the most frequently found one contained an N-terminal aliphatic hydrophobic amino acid (V, L or I) and an aromatic amino acid (Y or F) on the second position. At the third position in this motif several different amino acid residues were found, although N was the most frequent. Peptides representing two of the D -motifs were synthesized as well as peptides containing the HPQ/M motifs, and their binding properties were examined. Although the D -peptides were originally selected using avidin they also inhibited binding between immobilized biotin and soluble streptavidin as well as avidin. The IC₅₀ of some of the peptides were approximately 10⁵ times higher than the IC₅₀ for biotin but some had a lower IC₅₀ than iminobiotin. The D -peptides, which were originally selected from the library using avidin, could also inhibit the binding between streptavidin and biotin. Likewise, L -peptides selected from a library screened with streptavidin, could inhibit the binding of both streptavidin and avidin to immobilized biotin. Furthermore, the D -peptide, VFSVQSGS, as well as biotin could inhibit binding of streptavidin to an immobilized L -peptide (RYHPQSGS). This indicates that the biotin-like structure mimicked by these two seemingly very different peptides may react with the same binding sites in the streptavidin molecule.     

C3植物光呼吸及其生理功能

概述了影响光呼吸的因素、光呼吸调控的研究概况,以及光呼吸的生理功能,包括光保护、在氨代谢及谷胱甘肽合成中的作用,并提出了下一步需要解决的问题。     

Structure and function of Listeria teichoic acids and their implications

Teichoic acids (TAs) are the most abundant glycopolymers in the cell wall of Listeria, an opportunistic Gram-positive pathogen that causes severe foodborne infections. Two different structural classes of Listeria TA exist: the polyribitolphosphate-based wall teichoic acid (WTA) that is covalently anchored to the peptidoglycan, and the polyglycerolphosphate-based lipoteichoic acid (LTA) that is tethered to the cytoplasmic membrane. While TA polymers govern many important physiological processes, the diverse glycosylation patterns of WTA result in a high degree of surface variation across the species and serovars of Listeria, which in turn bestows varying effects on fitness, biofilm formation, bacteriophage susceptibility and virulence. We review the advances made over the past two decades, and our current understanding of the relationship between TA structure and function. We describe the various types of TA that have been structurally determined to date, and discuss the genetic determinants known to be involved in TA glycosylation. We elaborate on surface proteins functionally related to TA decoration, as well as the molecular and analytical tools used to probe TAs. We anticipate that the growing knowledge of the Listeria surface chemistry will also be exploited to develop novel diagnostic and therapeutic strategies for this pathogen.     

Effects of D-amino acids on lipoperoxidation in rat liver and kidney mitochondria

Summary. The effects of the amino acids D-ser, D-asp, and D-ala on lipoperoxidation under conditions of hypertension, alcoholism, and ammonemia in rat liver and kidney mitochondria were studied. Under normal conditions, D-alanine increased in 54% free radicals production in liver mitochondria (p < 0.05). The D-amino acids had no effect on kidney mitochondria. D-ser and D-ala increased lipoperoxidation in spontaneously hypertensive rats (SHR) as compared with their normotensive genetic control Wistar-Kyoto (WKY) rats (p < 0.05). During hypertension and in oxidative stress in the presence of calcium, only D-ala produced 46% and 29% free radicals in liver and kidney mitochondria (p < 0.05), respectively. During chronic alcoholism, D-ser increased lipoperoxidation in 80% in kidney mitochondria (p < 0.05), as compared to control. During ammonemia, D-ser produced 41% free radicals.