Genotoxicity in two bivalve species from a coastal lagoon in the south of Portugal

DNA damage was evaluated by comet assay in the haemolymph of two bivalve species Ruditapes decussatus and Mytilus galloprovincialis from the Ria Formosa lagoon (south Coast of Portugal). Clams and mussels were sampled from sites close to each other to determine interspecific responses to similar environmental conditions, considering also seasonal and gender differences. Coupled with genotoxic effect, another damage biomarker (lipid peroxidation) was analysed to verify if the conditions that instigate DNA damage can be related with injury to cell membranes. For both species, DNA damage was low, reflecting the low levels of genotoxic contaminants in the lagoon, and no interspecific differences were found. However, seasonal differences were established for both bivalve species, reflecting higher environmental stress in summer. Regarding gender susceptibility, only clams showed differences in percentage of Tail DNA, with females more sensitive to DNA damage than males. Additionally, results for clams point out that factors responsible for LPO may not be the same as those causing genotoxicity. This study demonstrated that DNA damage is a sensitive biomarker to discriminate spatial, temporal and gender differences, being an appropriate biomarker for genotoxicity evaluation even in places of low contamination, such as the Ria Formosa lagoon.     

Home range,residency and movements of Diplodus sargus and Diplodus vulgaris in a coastal lagoon: Connectivity between nursery and adult habitats

Acoustic telemetry and standard tag-recapture were used to determine the home range and residency of juveniles and sub-adults of Diplodus sargus and Diplodus vulgaris in the Ria Formosa (Portugal) coastal lagoon. Maximum time between recaptures for the standard tag-recapture method was 128 days for D. sargus and 30 days for D. vulgaris. The majority of the fish were recaptured in the vicinity of the tagging location. Fish tagged with acoustic transmitters had a maximum period of time between first and last detections of 62 days for D. sargus and 260 days for D. vulgaris. Minimum convex polygons areas ranged between 148?024 m² and 525?930 m² for D. sargus and between 23?786 m² and 42?134 m² for D. vulgaris. Both species presented a high residency index between first and last detections. Two D. sargus tagged with acoustic tags were recaptured by fishermen outside the coastal lagoon at distances of 12 km and 90 km from the tagging position, providing evidence that this species leaves the Ria Formosa during the winter time for the adjacent coastal waters. The results of this study reinforce the importance of Ria Formosa as a nursery for D. sargus and D. vulgaris in the south coast of Portugal.     

Long-term changes in fish communities of the Ria Formosa coastal lagoon (southern Portugal) based on two studies made 20 years apart

Fish communities of the Ria Formosa coastal lagoon (south Portugal) were sampled on a monthly basis with a beach seine at 4 sites, during two different time periods: 1980–1986 and 2001–2002. Community indices, species ranking and multivariate analysis were used in order to identify changes in the fish community between the two time periods. A total of 153,511 fish representing 57 taxa were recorded. Although species composition was very similar for both sampling periods, multivariate analysis performed on annual species abundance in number and weight revealed differences in fish community structure between the two periods. Structural changes in fish community were related mostly to a sharp decrease in the abundance of Mugilidae from 1980–1986 to 2001–2002. These changes were probably associated to a decrease in organic matter contents and nutrients concentrations due to improvements in sewage treatment and better water circulation inside the lagoon. The changes in fish community structure are more evident in the inner areas of the lagoon than near the inlet. The association between changes in sewage patterns and changes in the ichthyofaunal community structure reinforces the importance of fish communities as a biological indicator of human induced changes in marine systems.     

Use of shallow water habitats by fish assemblages in a Mediterranean coastal lagoon

The present study investigates the different uses and the functional roles of shallow habitats for fish fauna in the Venice Lagoon, by applying the functional guilds approach. Temporal (seasons) and spatial (location) changes within the lagoon show different habitat uses by fish assemblages, not influenced by local factors. Unvegetated mud habitats (salt marsh creeks and sub-tidal mud flats) and sparsely vegetated (seagrass) habitats show a common nursery role, especially for marine migrant fishes; but, contrary to other similar areas elsewhere shallow seagrass beds in the Venice Lagoon do not have a primary nursery role. This latter habitat has a more important role as a spawning ground for a resident, highly specialized component of the fish community. The habitat uses and their role to fish fauna illustrate the balance between predation risk and foraging profitability, as major factors structuring the fish assemblages. Spatial effects at a larger scale also highlight general characteristics of the fish assemblages in the Venice Lagoon. These indicate differences between the Northern sub-basin and the other two lagoon sub-basins, due to differences in the hydrodynamic regime, habitats distribution, and contributions from land and sea.     

Site fidelity and movements of gilthead sea bream (Sparus aurata) in a coastal lagoon (Ria Formosa, Portugal)

Short-time site fidelity and movements of gilthead sea bream (Sparus aurata) in a coastal lagoon were determined using passive acoustic telemetry. Nine fish, ranging from 20.1 to 32.5 cm total length, were surgically implanted with acoustic transmitters and monitored for up to 179 days. Minimum convex polygon areas ranged from 18,698.6 m² to 352,711.9 m². Home range sizes were small, with individuals using core areas on a daily basis. However, these core areas shifted within the study site over time towards the opening to the sea. Two different diel behaviors were recorded, with some individuals more active at night and others during day time. Some individuals also demonstrated homing abilities, returning to the capture site after being released more than 4 km away.     

Spatial pattern of coastal fish assemblages in different habitats in North‐western Mediterranean

Variability of fish assemblages across habitat structures can depend on spatial scales. A hierarchical sampling design was used to assess the spatial variability of temperate fish assemblages in different habitats and at multiple scales. Underwater visual censuses were carried out along the coasts of Elba Island (NW Mediterranean) on Posidonia oceanica beds, rocky algal reefs and sandy habitat at three spatial scales, namely tens of metres (individual replicates), hundreds of metres (sites) and tens of kilometres (locations). At the assemblage level, there was a clear relationship between fish and habitat type and the observed habitat‐related differences were largely dependent on species identity. Fish assemblages on P. oceanica beds and rocky reefs shared a high number of species, whereas overlap with sandy assemblages was negligible. Multivariate analyses revealed significant differences in fish assemblages among habitats, although there was also a significant habitat × site interaction. These differences relied mainly upon assemblage composition and species richness. Assemblages on rocky reefs and P. oceanica meadows usually harboured a higher number of species and individuals compared with sandy assemblages. Nevertheless, the patterns of habitat‐related differences in species richness and, especially, in the total number of fish, changed significantly from site to site. Eight species showed significant differences over habitats, but they were not consistent due to the interaction of habitat with site. Predictability of fish at both assemblage and population levels decreased with the scale of observation, and the spatial pattern of fish observed at the smallest scale was likely dependent on factors other than habitat type.     

Spatiotemporal dynamics of submerged macrophytes in a Mediterranean coastal lagoon

The seasonal and interannual dynamics of the biomass and spatial distribution of a macrophyte meadow were explored in a Mediterranean coastal lagoon (Albufera des Grau, Balearic Islands) from 2002 to 2007. The dynamics in the main physicochemical variables were also analysed to assess the factors involved in the spatiotemporal variability of the submerged macrophytes.     

Seagrass landscape-scale changes in response to disturbance created by the dynamics of barrier-islands: A case study from Ria Formosa (Southern Portugal)

This study documents long-term changes of a Zostera noltii landscape induced by a natural cyclic event in a coastal lagoon. The barrier-islands forming this system are very dynamic with drifting movements controlling ecological patterns and processes occurring in this area. Changes in the areal extent of the Z. noltii meadows were assessed using historical aerial photographs from 1940, 1980, 1989, 1996 and 1998. Landscape indices such as total patch area (TA), mean patch size (MPS), number of patches (NP), mean shape coefficient of variation (CV) and landscape fractal dimension (D) were calculated for each year and related to an index of disturbance intensity. The spatial distribution of the Z. noltii meadows varied greatly during the studied period and changes observed were related to the disturbance created by the barrier-islands' spatial dynamics. After an artificial inlet relocation the Z. noltii area, number of patches, patch mean size and coefficient of variation decreased. The fractal dimension of the Z. noltii landscape increased by 50% showing that besides a decrease in total area, number of patches, and patch mean area, patch fragmentation was an important consequence of this anthropogenic disturbance.Seagrass natural distribution patterns changed in response to natural and human-induced activities. This study emphasizes the importance of the landscape approach and the historical perspective when studying seagrass changes and the importance of taking into consideration long-term changes in seagrass landscapes to avoid confusion between man-induced effects with natural cyclic events.     

我国典型潮间带底栖硅藻群落空间分布特征

底栖硅藻是河口、泥质海滩生态系统的重要生物类群,其数量与分布变化直接或间接地影响到多种海洋生物的饵料供给、海鸟的生存与迁徙。通过对我国从南到北14个典型潮间带表层沉积物中底栖硅藻的分析,共鉴定出硅藻153种,其物种多样性（Shannon-Weaver 指数范围:1.61~4.39）与生物量（范围:0.09×103 ~ 10×103个/g,干质量）在空间上存在显著差异;聚类分析与相似性分析检验（r=0.738,P=0.1%< 0.01）表明,14个调查区域的硅藻群落在空间上可分为4个大的组合,分别对应着渤、黄、东、南海4个区域,吻合了我国近海浮游植物的地理分布特征。与环境因素的相关性分析表明,底栖硅藻群落的物种多样性与生物量受沉积物类型与盐度的影响显著,泥质区域更有利于硅藻的保存,而生物多样性在泥砂质低盐区域相对较高。此外,底栖硅藻生物量与表层沉积物中TOC含量表现出显著正相关性;δ13C数值的空间变化范围为-25‰~-20‰,指示了有机质陆海混合的特征,其中,涧河河口、黄河口、大沽河口、苏北浅滩区域,δ13C数值明显偏正,表明底栖硅藻可能是这些区域沉积物中有机碳的重要贡献者。     

广东沿海新发现的海草床

通过对广东沿海水域的现场调查, 新发现8个海草床, 主要分布在柘林湾、汕尾白沙湖、惠东考洲洋、大亚湾、珠海唐家湾、上川岛、下川岛和雷州企水湾。海草种类主要包括喜盐草(Halophila ovalis)、贝克喜盐草(Halophila beccarii)和矮大叶藻(Zostera japonica)等3种。海草覆盖率为6.67%—53.33%, 茎枝密度为3 428.57— 10 542.00shoots.m-2, 生物量为12.86—118.24g.m-2。海草床底上生物密度为16.67—734.67ind.m-2, 生物量为15.39—426.88g.m-2, 多样性指数为0.46—1.98, 均匀度指数为0.28—0.89。海草床生境受到的严重威胁主要来自围海养殖(养蚝、养螺)、污水排放、渔民作业方式(电鱼、电虾、扒螺、挖贝类)、自然灾害(台风和洪水)等。     

黄河三角洲潮间带大型底栖无脊椎动物群落结构与分布特征

为了解黄河三角洲潮间带大型底栖无脊椎动物现状,于2019年5月分别对建国后黄河入海口4个流路区域20个潮间带站位进行了采样调查.调查共采集到大型底栖无脊椎动物5纲16目37科60种,主要优势种有托氏（虫昌）螺(Umbonium costatum)、泥螺(Bullacta exarata)、光滑河篮蛤(Potamocor...     

黄海镆铘岛海域海草床数量分布及其生态特征

海草床是近海三大典型海洋生态系统之一,具有巨大的碳储备功能,并为众多海洋生物提供重要的栖息场所及食物来源,在维持近岸海洋生态系统平衡中发挥着重要的作用。2016年8月通过对黄海镆铘岛海域的现场调查,发现分布面积为272.84 ha的海草床主要种类为鳗草(Zostera marina)和红纤维虾形草(Phyllospadix iwatensis)。鳗草的分布面积约为177.23 ha,占总面积的65%,主要分布在镆铘岛沿岸的海参养殖池中,红纤维虾形草的分布面积约为95.61 ha,占总面积的35%,主要分布在沿岸的礁石上,呈明显的带状分布。鳗草的平均株高为(86.8±5.8)cm,平均植株密度和生物量分别为(364.0±14.2)株/m~2和(528.7±20.5)gDW/m~2;红纤维虾形草的平均株高为(112.8±3.8)cm,平均植株密度和生物量分别为(3087.0±35.4)株/m~2和(2320.0±26.6)gDW/m~2。红纤维虾形草的分布水深为(1.80±0.04)m,海草床的水体溶解氧含量较高,达到(10.4±0.1)mg/L,分布有鳗草的海参池塘的底质粒径为(4.6±0.1)mm。结合历史资料,发现该海域海草床退化现象十分严重,这除了受自然环境变化的影响外,与过度的人类活动干扰有关。并提出了海草床修复与保护的建议和对策,可为进一步研究与保护该区域海草床生态系统提供基础。     

Long‐term spatial dynamics in vegetated seascapes: fragmentation and habitat loss in a human‐impacted subtropical lagoon

Vegetated coastal seascapes exhibit dynamic spatial patterning, some of which is directly linked to human coastal activities. Human activities (e.g. coastal development) have modified freshwater flow to marine environments, resulting in significant changes to submerged aquatic vegetation (SAV) communities. Yet, very little is known about the spatially complex process of SAV habitat loss and fragmentation that affects ecosystem function. Using habitat mapping from aerial photography spanning 71 years (1938–2009) for Biscayne Bay (Florida, USA), we quantify both SAV habitat loss and fragmentation using a novel fragmentation index. To understand the influence of water management practices on SAV seascapes, habitat loss and fragmentation were compared between nearshore and offshore locations, as well as locations adjacent to and distant from canals that transport freshwater into the marine environment. Habitat loss and fragmentation were significantly higher along the shoreline compared with offshore seascapes. Nearshore habitats experienced a net loss of 3.31% of the total SAV mapped (2.57 km²) over the time series. While areas adjacent to canals had significantly higher SAV cover, they still experienced wide fluctuations in cover and fragmentation over time. All sites exhibited higher fragmentation in 2009 compared with 1938, with four sites exhibiting high fragmentation levels between the 1990s and 2000s. We demonstrate that freshwater inputs into coastal bays modify the amount of SAV and the fragmentation dynamics of SAV habitats. Spatial changes are greater close to shore and canals, indicating that these coastal developments have transformative impacts on vegetated habitats, with undetermined consequences for the provisioning of ecosystem goods and services.     

Contrasting effects of ecosystem engineering by the cordgrass Spartina maritima and the sandprawn Callianassa kraussi in a marine-dominated lagoon

Ecosystem engineering by plants and animals significantly influences community structure and the physico-chemical characteristics of marine habitats. In this paper we document the contrasting effects of ecosystem engineering by the cordgrass Spartina maritima and the burrowing sandprawn Callianassa kraussi on physico-chemical characteristics, microflora, macrofaunal community structure and morphological attributes in the high shore intertidal sandflats of Langebaan Lagoon, a marine-dominated system on the west coast of South Africa. Comparisons were made at six sites in the lagoon within Spartina and Callianassa beds, and in a “bare zone” of sandflat between these two habitats that lacks both sandprawns and cordgrass. Sediments in Spartina habitats were consolidated by the root-shoot systems of the cordgrass, leading to low sediment penetrability, while sediments in beds of C. kraussi were more penetrable, primarily due to the destabilising effects of sandprawn bioturbation. Sediments in the “bare zone” had intermediate to low values of penetrability. Sediment organic content was lowest in bare zones and greatest in Spartina beds, while sediment chl-a levels were greatest on bare sand, but were progressively reduced in the Spartina and Callianassa beds. These differences among habitats induced by ecosystem engineering in turn affected the macrofauna. Community structure was different between all three habitats sampled, with species richness being surprisingly greater in Callianassa beds than either the bare zone or Spartina beds. In general, the binding of surface sediments by the root systems of Spartina favoured rigid-bodied, surface-dwelling and tube-building species, while the destabilising effect of bioturbation by C. kraussi favoured burrowing species. The contrasting effects of these ecosystem engineers suggest that they play important roles in increasing habitat heterogeneity. Importantly, the role of bioturbation by C. kraussi in enhancing macrofaunal richness was unexpected. By loosening sediments, reducing anoxia and enhancing organic content, C. kraussi may engineer these high shore habitats to ameliorate environmental stresses or increase food availability.     

高通量测序分析北仑河口红树林潮间带底栖真核生物分布

为了解红树林不同潮位沉积物中底栖真核生物群落分布,基于18S rRNA基因采用高通量测序方法分析了广西北仑河口陆缘、林中和海缘3个潮位红树林沉积物中底栖生物群落结构。结果表明,北仑河口潮间带红树林沉积物中底栖生物多样性丰富,Shannon-Wiener指数变化范围在6. 08～6. 73之间; PCA分析表明潮间带中底栖生物群落差异较大,陆缘红树林中扁形动物、节肢动物和软体动物相对丰度较高,林中区域中纤毛虫、环节动物和轮虫相对丰度较高,海缘红树林中硅藻相对丰度较高;红树林中主要OTUs有桡足类的太平洋纺锤水蚤(Acartia pacifica)、硅藻类的海链藻(Thalassiosira sp.)、纤毛虫类的前管虫(Prorodon teres)、多毛类的小头虫(Capitella sp.)。高通量测序方法能较全面反映红树林区微型/小型底栖生物群落,研究结果为丰富红树林底栖生物群落研究和解析底栖生物在红树林生态系统发挥的作用提供基础数据。     

Effects of upwelling,tides and biological processes on the inorganic carbon system of a coastal lagoon in Baja California

The role of coastal lagoons and estuaries as sources or sinks of inorganic carbon in upwelling areas has not been fully understood. During the months of May–July, 2005, we studied the dissolved inorganic carbon system in a coastal lagoon of northwestern Mexico during the strongest period of upwelling events. Along the bay, different scenarios were observed for the distributions of pH, dissolved inorganic carbon (DIC) and apparent oxygen utilization (AOU) as a result of different combinations of upwelling intensity and tidal amplitude. DIC concentrations in the outer part of the bay were controlled by mixing processes. At the inner part of the bay DIC was as low as 1800 μmol kg⁻¹, most likely due to high water residence times and seagrass CO₂ uptake. It is estimated that 85% of San Quintín Bay, at the oceanic end, acted as a source of CO₂ to the atmosphere due to the inflow of CO₂-rich upwelled waters from the neighboring ocean with high positive fluxes higher than 30 mmol C m⁻² d⁻¹. In contrast, there was a net uptake of CO₂ and HCO₃⁻ by the seagrass bed Zostera marina in the inner part of the bay, so the pCO₂ in this zone was below the equilibrium value and slightly negative CO₂ fluxes of −6 mmol C m⁻² d⁻¹. Our positive NEP and ΔDIC values indicate that Bahía San Quintín was a net autotrophic system during the upwelling season during 2005.     

Spatio-temporal variability of micro- and meiobenthic communities in a White Sea intertidal sandflat

Meiobenthos (harpacticoids), microzoobenthos (ciliates) and microphytobenthos (epipelic diatoms and dinoflagellates) were collected during July 1999 using nested sampling at the scales of decimeters, meters and tens of meters. Similarity between samples decreased rapidly with distance for all groups, but unicellular organisms were distributed more heterogeneously at a large scale than meiobenthos. Microspatial (decimeter scale) variations contributed the main part of total variation of harpacticoid abundance, while the large-scale differences were less important. On the contrary, these differences yielded the main variability for ciliates and especially for microalgae. The relative role of temporal variability decreased steadily for the smaller-sized organisms. Stability of spatial structure at multiple scales was estimated by Mantel correlations, R_m, between the successive similarity matrices. For harpacticoids, the results showed intensive and chaotic turnover of microaggregations. For microbenthos, rather high R_m values were found in smaller scales: tens of meters—for ciliates, from meters on—for dinoflagellates, and already from decimeter scale and on—for diatoms. Thus, the general spatial pattern (that is the arrangement of micropatches) was more stable for microbenthos than for meiobenthos. Temporal variability of species structure, in contrast to the spatial one, was highest for the smallest organisms. Correlations between size groups, using both total abundance and species composition, differed for microspatial, meso-spatial or temporal distribution. At the microscale, there were slight but significant negative correlations between harpacticoids and microalgae. Meso-scale distribution of dinoflagellates and diatoms differed significantly due to their different preferences in sediment properties. Ciliates were strongly positively correlated with dinoflagellates. At the microscale, each group had an individual community pattern. At larger scales, species composition of diatoms, ciliates and harpacticoids varied in space in coordination, while dinoflagellates behaved independently. It is hypothesized that body size determines the spatio-temporal scale of the perception of environmental heterogeneity.     

Sex‐specific affinity for redox‐active metals influences antioxidant responses of Callinectes amnicola (blue crab) populations in littoral and open water habitats of a tropical coastal lagoon

The critical role of ecological preferences and opportunity in determining contaminant uptake and adaptive responses of sexes in the wild is still poorly understood. This ecological relationship was investigated by measuring metal bioaccumulation and antioxidant activity in male and female blue crab populations from open water habitat and the littoral/inter‐tidal zone of the Lagos Lagoon. A total of 741 samples of blue crab (littoral zone: 263 females, 137 males; open water zone, 230 females, 111 males) was collected monthly over 24 months (January 2010–January 2012) from each site and the measurements of morphometric features (wet weight, carapace length, carapace width) were recorded; condition index, metal (redox active: Cu, Zn, redox inactive: Pb, Cd) concentration in tissues (gills, hepatopancreas, gonads and muscle) and antioxidant activity (superoxide dismutase, reduced glutathione, glutathione peroxidase, catalase and malondialdehyde) were measured for each sex. Monthly sediment samples for both habitats were also analysed for metals using standard methods. Female crabs were significantly larger (p < .05) with a better condition index than the male crabs across sites and seasons, while higher oxidative damage was recorded in male crabs in the littoral zone compared to the open water zone. The results show that there was a negative association between antioxidant activity and lipid peroxidation; a negative relationship between concentrations of redox‐inactive metals (Pb and Cd) and antioxidant activity in male crab tissues; and a positive relationship between uptake of a redox‐active metal (Cu) and antioxidant activity in female crab tissues. Although these trends suggest sex‐specific toxicity, they also associate redox‐inactive metals with the downregulation of antioxidant activity and oxidative stress. Furthermore, the higher condition index of females corroborates the possibility of sex‐specific toxicity, while the larger‐sized females compared to males suggests size‐sexual dimorphism in the blue crab populations. The site‐specific oxidative damage between sexes may be attributed to the different complexity of both habitats, which affords different ecological opportunities for the sexes.     

长江口崇明东滩水域悬沙粒径组成和再悬浮作用特征

根据2006年10月在崇明东滩潮间带和潮下带两个站位的大小潮水文泥沙观测资料和悬沙水样的室内粒度分析资料,对悬沙粒径的时空分布特征及其与流速等的关系进行了分析,并对再悬浮特点进行了探讨,结果表明,大小潮期间的悬沙颗粒组成较细,平均粒径的均值仅为6μm;大潮时的悬沙粒径略粗于小潮的,潮间带的略粗于潮下带的;由底床向上悬沙粒径趋于减小。悬沙粒径与流速、悬沙含量无明显的统计学关系,底质粒径、再悬浮强度和再悬浮泥沙粒径的空间变化以及浮泥的悬浮作用等是主要的影响因素。由于底质粒径的空间分布复杂,在东滩水域再悬浮具有明显的空间变化。在底质平均粒径大于60μm的粗颗粒沉积区,大小潮的再悬浮作用微小,底质以推移质运动为主。在底质平均粒径介于5~11μm的细颗粒沉积区上,悬沙级配与底质级配基本相同,该区域是再悬浮的主要发生源地;悬沙级配的变化过程揭示,再悬浮对底层悬沙的贡献率平均为8%~20%,大潮时的再悬浮强度是小潮的5~10倍,由底质再悬浮产生的悬沙在底部水层中的平均含量约为0.03~0.47 kg/m3。     

Evidence of the restricted gene flow within a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis

Elucidating the scale of gene flow among populations is an important challenge for understanding the ecological dynamics and local adaptation of marine organisms. We assessed whether gene flow is restricted even at a small spatial scale in the Japanese common intertidal goby Chaenogobius annularis, using highly polymorphic DNA markers, involving the mitochondrial DNA (mtDNA) control region and 15 microsatellite DNA (msDNA), because past ecological studies have suggested low dispersal ability for rocky intertidal fishes. We found significant heterogeneities between four neighboring local populations by both mtDNA and msDNA analyses. In addition, no genetic heterogeneity was detected by either method across generations within a population; it was considered that such genetic differentiation is retained across generations and that the gene flow of this species is restricted to within a radius of a few kilometers. This is the first report showing a clear genetic subdivision in rocky intertidal fish.