塑化剂邻苯二甲酸二丁酯与小牛胸腺DNA的沟槽结合

运用多种光谱学方法,结合化学计量学多元曲线分辨-交替最小二乘法(MCRALS),以及分子模拟技术,在人体生理酸度(pH=7.4)条件下研究了邻苯二甲酸二丁酯(DBP)与小牛胸腺DNA(ctDNA)的相互作用。采用MCR-ALS法分析了DBP与ctDNA作用的紫外光谱数据矩阵,结果表明DBP与ctDNA作用形成了DBP-ctDNA复合物。荧光猝灭实验显示,ctDNA对DBP的荧光猝灭属于形成复合物的单一静态猝灭,其主要驱动力为疏水作用和氢键。通过单双链、熔点和粘度等实验证明DBP与ctDNA发生了沟槽结合,结合区域为A、T碱基富集区。圆二色谱和琼脂糖凝胶电泳分析表明,DBP与ctDNA结合导致ctDNA结构变得更为松散,但未造成质粒DNA损伤。分子模拟形象直观地展现了两者的结合姿态,预测结果与实验结果吻合。     

含芘荧光化学敏感器化合物同小牛胸腺DNA分子间的相互作用

研究了含芘荧光化学敏感器分子被ctDNA猝灭的荧光光谱.ctDNA分子对该化学敏感器中芘的激发单体,激基缔合物都有猝灭作用.对激发单体的猝灭速度顺序为;化合物(2)>化合物(1)>芘丁酸>化合物(3);对激基缔合物的猝灭速度顺序为;化合物(2)化合物(3).由得到的荧光猝灭数据,可按公式(2)求得荧光化学敏感器分子与ctDNA分子相互作用的稳定常数.发现化合物(2)与ctDNA分子间有着最强的相互作用能力.按ctDNA和含芘荧光化学敏感器的分子结构、构型以及分子内原子-原子的间距等提出了ctDNA分子与该荧光化学敏感器的作用模型,并对上述结果进行了初步解释.     

光谱法研究硫酸奎宁与小牛胸腺DNA的相互作用

本文采用紫外吸收光谱、荧光光谱、荧光偏振等方法研究了硫酸奎宁(QN)与小牛胸腺DNA(ctDNA)的相互作用,考察了影响其相互作用的各种因素,探讨了作用机理和作用方式。DNA存在时,QN的荧光被显著猝灭,吸收光谱出现减色现象。荧光偏振和阴离子猝灭等实验证实QN通过嵌插方式与ctDNA作用。测得QN与DNA的本征键合常数为1.51(±0.13)×104 L/mol,结合位点数为0.997,一分子的QN可以和大约1个碱基对作用。     

烷基酚与DNA相互作用的荧光光谱法研究

用荧光光谱法研究了环境激素辛基酚(OP)、壬基酚(NP)与小牛胸腺DNA(ctDNA)的相互作用.实验发现,随着ctDNA的加入,辛基酚、壬基酚的荧光光谱产生了有规律地猝灭,且最大发射峰红移.其中荧光猝灭是由于形成了烷基酚-DNA加合物而引起的静态猝灭.辛基酚、壬基酚与ctDNA均以插嵌模式相互作用,其结合常数分别为5.1×105 L·mol-1 和1.4×106 L·mol-1 ,结合位点分别为1.31和1.45.热力学参数确定了辛基酚及壬基酚与ctDNA的作用力类型主要是疏水作用力.     

白藜芦醇与DNA相互作用的研究

在pH=7.4的Tris-HCI缓冲溶液中,采用紫外光谱、荧光光谱及粘度法研究了白藜芦醇与小牛胸腺DNA(ctDNA)的相互作用。在生理条件下,白藜芦醇可以与ctDNA相互作用形成复合物,运用双倒数法求出了白藜芦醇与ctDNA相互作用的热力学参数。白藜芦醇能有效猝灭吖啶橙(AO)-DNA体系的荧光,猝灭方式为生成复合物的静态猝灭。粘度法实验证明ctDNA溶液的粘度随着白藜芦醇浓度的增加而增大。结果表明,白藜芦醇与DNA发生了较强的相互作用,其键合模式为经典的插入方式。     

荧光光谱法研究磷酰化5,7-二羟基黄酮与ctDNA的相互作用

以溴化乙锭(EB)为荧光探针,研究了磷酰化5,7-二羟基黄酮与ctDNA的相互作用。实验结果表明,磷酰化5,7-二羟基黄酮与ctDNA间存在相互作用。随着温度的升高,磷酰化5,7-二羟基黄酮对ctDNA-EB体系的荧光猝灭常数降低,磷酰化5,7-二羟基黄酮可与ctDNA形成复合物,此猝灭过程为静态猝灭。根据Stern-Volmer方程,算出25℃及37℃下磷酰化5,7-二羟基黄酮对ctDNA-EB体系的荧光猝灭常数分别为Kq1=30 860 L/mol及Kq2=27 760 L/mol,并且算出它与ctDNA结合的平衡常数为KM=2.39×107L/mol。     

乙酰阿魏酰酪氨酰酪氨酸的合成及其与DNA相互作用初探

用固相法合成了乙酰阿魏酰酪氨酰酪氨酸(F-Tyr-Tyr),并用ESI-MS、IR、NMR对其结构进行表征。应用紫外光谱法、荧光光谱法研究了F-Tyr-Tyr与小牛胸腺DNA(ctDNA)的相互作用。结果表明,F-Tyr-Tyr与ctDNA相互作用后体系的紫外吸收呈减色效应,且F-Tyr-Tyr加入后,DNA-EB体系的荧光强度减弱。根据Stern-Volmer方程求出F-Tyr-Tyr-DNA-EB体系的猝灭常数为K SV=6.28×103L·mol-1,猝灭方式为静态猝灭,推测F-Tyr-Tyr与ctDNA的相互作用模式主要是静电结合。     

多柔比星稀土配合物与人血清白蛋白相互作用的研究

运用荧光光谱法研究了多柔比星稀土配合物(ADM-M)与人血清白蛋白(HSA)的相互作用.结果表明:多柔比星稀土配合物对HSA的荧光有较强的猝灭作用,其荧光猝灭为混合猝灭过程.求得多柔比星稀土配合物与HSA的结合常数、结合位点数.由热力学参数确定了多柔比星稀土配合物与HSA的作用力类型.同时用同步荧光光谱法考察了多柔比星...     

荧光可逆调控研究CdTe量子点-吖啶橙-小牛胸腺DNA的相互作用及分析应用

水相合成了谷胱甘肽(GSH)修饰的CdTe 量子点(QDs). 在PH＝7.4的Tris-HCl缓冲溶液中, 吖啶橙(AO)通过静电引力吸附到GSH-CdTe QDs 的表面, 与GSH-CdTe QDs形成了基态复合物, 导致GSH-CdTe QDs的荧光猝灭. 在GSH-CdTe QDs-AO体系中加入小牛胸腺DNA (ctDNA), ctDNA诱导AO从GSH-CdTe QDs表面脱落嵌入其双螺旋结构中, 导致GSH-CdTe QDs的荧光恢复. 根据GSH-CdTe QDs荧光的猝灭和恢复, 实现了量子点荧光的可逆调控. ctDNA引起GSH-CdTe QDs-AO体系荧光恢复强度与ctDNA浓度成良好的线性关系, 检出限为0.13 ng•mL^－1, 据此提出了简便快捷、准确、高灵敏测定ctDNA的新方法. 还结合共振瑞利散射(RRS)光谱、吸收光谱和原子力显微镜照片研究了GSH-CdTe QDs-AO-ctDNA三者之间的相互作用, 对相互作用机理进行了讨论并提出了相应的作用模型.     

沙丁胺醇与小牛胸腺DNA相互作用研究

在生理酸度条件下(pH7.4),运用紫外–可见吸收光谱、荧光光谱、圆二色谱(CD)和傅立叶红外光谱(FT–IR)并结合分子模拟、DNA熔点及粘度测定,研究了沙丁胺醇(Sal)与小牛胸腺DNA(ctDNA)的相互作用。结果表明,ctDNA以静态方法猝灭Sal的内源荧光,25℃时ctDNA与Sal的结合常数为1.26×104L·mol,氢键和范德华力是两者结合的主要驱动力。Sal存在下,ctDNA的熔点无明显变化,KI荧光猝灭效应和盐效应不明显,证实Sal与ctDNA主要通过沟槽模式结合。FT-IR与分子模拟结果显示,Sal倾向于与ctDNA的胸腺嘧啶(T碱基)结合。CD和凝胶电泳分析表明,Sal与ctDNA结合没有对DNA产生明显损伤,DNA仍维持B型构象。     

Study on the phosphorescence characterizations of palmatine chloride on the solid substrate and its interaction with ctDNA

The spectroscopic characterizations of solid substrate room temperature phosphorescence (SS-RTP) of palmatine (Pal) have been studied. Strong RTP signal at 615 nm can be induced on filter paper in the presence of TIAc. The interaction between calf thymus DNA (ctDNA) and Pal has been investigated at pH 6.90 using fluorescence, UV-vis, SS-RTP and cyclic voltammogram spectroscopy. Strong binding affinity of Pal with DNA is revealed from the absorption and fluorescence studies in the liquid state. With the addition of ctDNA, the fluorescence intensity of Pal is enhanced greatly and UV-vis spectra show no apparent hypochromicity and red shift, which indicates that Pal intercalates into ctDNA bases. However, this conclusion could not explain the phenomena from fluorescence polarization and denatured DNA measurements, which indicate that groove binding is at least the main binding mode. Binding constant and binding site size have been calculated to be 2.57 × 10⁴ L/mol and 0.16 based on Scatchard plot from fluorescence titration data. Groove binding has also been supported by phosphorescence lifetime and anion quenching experiments. Above studies demonstrate that there should exist intercalative binding and groove binding in the interaction of Pal and DNA. Furthermore, cyclic voltammogram study suggests that electrostatic binding exists at the same time exactly. Taken together, the binding model obtained in this study is mixed-mode.     

Synchronous fluorescence determination of DNA based on the interaction between methylene blue and DNA

The fluorescence intensity of methylene blue (MB) quenched by DNA in the pH range of 6.5-8.0 was studied with synchronous fluorescence technology. A novel method for detecting single-stranded and double-stranded DNA was developed. The decreased fluorescence intensity at 664 nm is in proportion to the concentration of DNA in the range of 0.28-11.0 μmol L⁻¹ for ctDNA, 0.14-8.25 μmol L⁻¹ for thermally denatured ctDNA and 0.28-8.25 μmol L⁻¹ for hsDNA. The detection limits (S/N = 3) are 0.11, 0.04 and 0.04 μmol L⁻¹, respectively. The method is rapid, selective, and the reagents are lower toxic. It has been used for the determination of DNA in synthetic samples with good satisfaction. In addition, the interaction modes between MB and ctDNA and the mechanism of the fluorescence quenching were also discussed in detail. The experimental results from absorption spectra and fluorescence polarization indicate that the possible interaction modes between MB and DNA are the electrostatic binding and the intercalation binding.     

S-异丙甲草胺与小牛胸腺DNA的相互作用

应用紫外光谱、荧光光谱、DNA热变性法以及黏度法研究了S-异丙甲草胺与小牛胸腺DNA(ctDNA)的相互作用. 结果表明, S-异丙甲草胺使ctDNA在200 nm处的吸收峰发生明显改变, 表现出红移和减色效应, 而对260 nm处的吸收峰产生影响较小, 排除了嵌插作用的可能; ctDNA对S-异丙甲草胺内源性荧光表现出很强的猝灭作用, 且随温度的升高, 其猝灭程度有所下降, 表明S-异丙甲草胺是以形成加合物的方式与ctDNA结合的, 并求得了它们在不同温度下的结合常数; 将不同离子强度条件下S-异丙甲草胺与ctDNA作用以及不同S-异丙甲草胺浓度下ctDNA的热变性温度和黏度变化的研究结果与紫外光谱和荧光光谱相结合, 可以判断S-异丙甲草胺是以沟槽作用的方式与ctDNA结合的.     

Study on spectroscopic characterization of Pd porphyrin and its interaction with ctDNA

The fluorescence and solid substrate room temperature phosphorescence (SS-RTP) properties of Pd(II) meso-tetrakis (4-N-methyl-pyridiniumyl) porphyrin (Pd(II)TMPyP) were studied. The factors influencing the SS-RTP emission, such as filter type, inorganic salt sort, drying temperature, pre-drying time and drying time were investigated in detail. Strong SS-RTP signal can be induced on the slow speed filter paper in the presence of the external inorganic salt, Ca(NO₃)₂, with the maximum excitation and emission wavelengths at 421 nm and 675 nm, respectively. The interaction between calf thymus DNA (ctDNA) and Pd(II)TMPyP was investigated at pH 7.2 using SS-RTP, fluorescence and UV-vis spectroscopy. The SS-RTP intensity of Pd(II)TMPyP was enhanced efficiently with the increasing amount of ctDNA. This phenomenon demonstrates that the intercalated porphyrin is shielded by ctDNA to avoid collision quenching. This result was supported by SS-RTP lifetime measurement, SS-RTP anion quenching experiment and fluorescence polarization measurement. Furthermore, with the addition of ctDNA, the UV-vis spectra of Pd(II)TMPyP shows apparent hypochromicity (40%) at the Soret maximum of 417 nm and a red shift of Δλ = 15 nm, also indicating that Pd(II)TMPyP intercalates into ctDNA bases. The binding constant of Pd(II)TMPyP to ctDNA was calculated to be 4.41 × 10⁵ L/mol based on the derivative McGhee-von Hippel plots.     

Interaction of an anthracycline disaccharide with ctDNA: Investigation by spectroscopic technique and modeling studies

This study was designed to examine the interaction of an anthracycline disaccharide, 4′-O-(β-L-oleandrosyl) daunorubicin (DNR–D2), with calf thymus deoxyribonucleic acid (ctDNA) by UV–vis in combination with fluorescence spectroscopy and molecular modeling techniques under physiological conditions (Britton–Robinson buffer solutions, pH 7.4). By the analysis of UV–vis and fluorescence spectrum, it was observed that the binding mode between DNR–D2 and ctDNA might be intercalation, and fluorescence quenching mechanism of DNR–D2 by ctDNA was a static quenching type. Upon binding to ctDNA, the anthraquinone chromophore of DNR–D2 could slide into the C–G rich region of ctDNA. Hydrogen bonding forces may play an essential role in the binding of DNR–D2 to ctDNA. Furthermore, the results obtained from computational modeling corroborated the experimental results obtained from spectroscopic investigations. These studies are valuable for a better understanding the datailed mode of DNR–D2–DNA interaction, which should be important in deeper insight into the therapeutic efficiency of DNR–D2.     

Multiplex binding modes of toluidine blue with calf thymus DNA and conformational transition of DNA revealed by spectroscopic studies

It is noteworthy to understand the details of interactions between antitumor drugs and DNA because the binding modes and affinities affect their antitumor activities. Here, The interaction of toluidine blue (TB), a potential antitumor drug for photodynamic therapy of tumor, with calf thymus DNA (ctDNA) was explored by UV–vis, fluorescence, circular dichroism (CD) spectroscopy, UV-melting method and surface-enhance Raman spectroscopy (SERS). The experimental results suggest that TB could bind to ctDNA via both electrostatic interaction and partial intercalation. The fluorescence quenching of TB by ctDNA was static and due to electron transfer from bases to the excited singlet state of TB. At low [TB]/[DNA] ratio, TB mainly partially intercalated into ctDNA resulting in the slight increase of base stacking degree; at high [TB]/[DNA] ratio, excessive TB externally stacked along the helix surface via coupling with partially intercalated ones, thereby inducing B-A transition of ctDNA. The conformational transition of DNA was confirmed by the obvious improvement of the thermal stability of ctDNA. The SERS spectra suggest that TB could partially intercalate into DNA basepairs with its ring C₁NC_1′ side buried.     

Luminescence Studies on Interaction of an Isoquinoline Alkaloid with Calf Thymus DNA in Aqueous Medium and on Solid Substrate

The interaction of calf thymus DNA(ctDNA) with berberine(Ber) was systematically investigated via UV-Vis, fluorescence and phosphorescence spectroscopies in aqueous solution and on solid substrate. The very weak fluorescence intensity of Ber at 525 nm in aqueous solution can be greatly enhanced by ctDNA. The UV-Vis spectrum shows that Ber could bind with DNA by intercalation. In addition, strong fluorescence of Ber alone could be observed on filter paper substrate and can be quenched by ctDNA effectively, and the increase of fluorescence polarization of Ber on the filter paper implies the intercalation binding. Ber emits phosphorescence at 619 nm in the presence of thallium(I) acetate. The lifetime of Ber increased from 38.4 ms to 43.4 ms with the increase of ctDNA. The increase of lifetime is possibly attributed to the increase of rigidity of Ber after its intercalating into the ctDNA base pairs. This explanation is also augmented by the anionic quenching results. Ber behaves as a typical intercalating agent into ctDNA.The intrinsic binding constant between Ber and ctDNA is (1.84?0.12)?10⁴ L/mol and n=0.16.     

Binding interaction of cationic phenazinium dyes with calf thymus DNA: a comparative study

Absorption, steady-state fluorescence, steady-state fluorescence anisotropy, and intrinsic and induced circular dichroism (CD) have been exploited to explore the binding of calf thymus DNA (ctDNA) with three cationic phenazinium dyes, viz., phenosafranin (PSF), safranin-T (ST), and safranin-O (SO). The absorption and fluorescence spectra of all the three dyes reflect significant modifications upon interaction with the DNA. A comparative study of the dyes with respect to modification of fluorescence and fluorescence anisotropy upon binding, effect of urea, iodide-induced fluorescence quenching, and CD measurements reveal that the dyes bind to the ctDNA principally in an intercalative fashion. The effect of ionic strength indicates that electrostatic attraction between the cationic dyes and ctDNA is also an important component of the dye-DNA interaction. Intrinsic and induced CD studies help to assess the structural effects of dyes binding to DNA and confirm the intercalative mode of binding as suggested by fluorescence and other studies. Finally it is proposed that dyes with bulkier substitutions are intercalated into the DNA to a lesser extent.     

Absorption,Fluorescence and Resonance Rayleigh Scattering Spectra of Interaction of Papain with Calf Thymus DNA

In weak acidic medium, interaction between papain and calf thymus DNA (ctDNA) resulted in absorption spectral change, fluorescence quenching of papain and remarkable enhancement of resonance Rayleigh scattering (RRS). The interaction types and binding modes were discussed by characteristics of RRS, absorption, fluorescence and circular dichroism spectra combining thermodynamic data. Four interaction types include electrostatic attraction, hydrophobic force, hydrogen bonding and aromatic stacking interaction. Papain interacted with the major groove of ctDNA. Aromatic stacking interaction is the main reason of change of absorption spectrum and fluorescence quenching of papain. Surface enhanced scattering effect, resonance energy transfer effect, increase of molecular volume and conformational change make contribution to RRS enhancement. The enhanced RRS intensity (ΔI) is directly proportional to the concentration of ctDNA or papain. The detection limit (3σ) is 5.2 ng·mL^?1 for ctDNA and 5.6 ng·mL^?1 for papain. This creates conditions for determination of papain and ctDNA.