H2O, H2S与双卤分子间相互作用的电子密度拓扑研究

运用量子化学微扰理论MP2和密度泛函B3LYP方法, 采用6-311＋＋G(d,p)基组, 对H₂O, H₂S与双卤分子XY (XY＝F₂, Cl₂, Br₂, ClF, BrF, BrCl)形成的卤键复合物进行构型全优化, 并计算得到了这些体系的分子间相互作用能. 利用电子密度拓扑分析方法对卤键复合物的拓扑性质进行了分析研究, 探讨了该类分子间卤键的作用本质. 结果表明, 形成卤键后, 作为电子受体的双卤分子X—Y键长增长, 振动频率减小. 复合物体系中的卤键介于共价键与离子键之间, 偏于静电作用成分为主.     

(CH2)2O, (CH2)2S与双卤分子间卤键的理论研究

运用量子化学密度泛函B3LYP方法, 采用6-311＋＋G(d,p)及aug-cc-pVDZ基组, 通过CP校正的几何梯度优化对(CH2)2O和(CH2)2S与双卤分子XY (XY＝Cl2, Br2, ClF, BrF, BrCl)形成的卤键复合物的几何构型、振动频率和相互作用能等进行了研究. 利用电子密度拓扑分析理论方法对卤键复合物的拓扑性质进行了分析研究, 探讨了该类分子间卤键的作用本质. 结果表明, (CH2)2O和(CH2)2S与双卤分子间的卤键介于共价键与离子键之间, 偏于静电作用成分为主. 形成卤键后, 双卤分子的键长增加, 振动频率减小, 原子积分性质发生改变. 卤键键长的变化、键能的强弱、键鞍点处的电子密度值与双卤分子的电负性有关.     

3-硝基-1,2,4-三唑-5-酮与NH3及H2O分子间相互作用的理论研究

在DFT-B3LYP/6-311＋＋G**水平上, 求得3-硝基-1,2,4-三唑-5-酮(NTO)/NH₃和NTO/H₂O两种超分子体系势能面上5种全优化构型. 经基组叠加误差(BSSE)和零点能(ZPE)校正, 求得NTO与NH₃和H₂O的分子间最大相互作用能依次为－37.58和－30.14 kJ/mol, 表明NTO与NH₃的分子间相互作用强于与H₂O的作用. 超分子体系中电子均由NH₃或H₂O向NTO转移, 相互作用能主要由强氢键所贡献, 由自然键轨道分析揭示了相互作用的本质. 对优化构型进行振动分析, 并基于统计热力学求得200.0～800.0 K温度范围从单体形成超分子的热力学性质变化. 发现由NTO和NH₃形成超分子II和III在常温下可自发进行; 而NTO和H₂O只在低温下才能自发形成IV, V和VI超分子.     

单电子卤键复合体系H3C···Br-Y(Y=H, CN, NC, CCH, C2H3)的作用机制

对单电子溴键复合物H₃C···Br—Y(Y=H, CCH, CN, NC, C2H3)的结构与性质进行了理论研究. 在B3LYP/6-311++G**水平上计算了稳定构型并做了频率分析. BSSE矫正的相互作用能(E^BSSE)和NBO及AIM分析输入的波函数在MP2/6-311++G**水平下完成. 复合物H₃C···Br—Y中, CH₃(供电子体)自由基均提供一未成对电子与Br—Y中Br(受电子体)形成了单电子溴键, 此单电子溴键也具有“三电子”键的特征. 单电子溴键的形成导致甲基H的背向Y弯曲和Br—Y键的拉长及红移单电子溴键复合物的产生. 考察了电子受体中不同取代基, C(spⁿ)-Br杂化及溶剂的存在对复合物作用的影响, 将单电子氢键, 单电子卤键和单电子锂键的作用强度做了对比, 进一步对Popelier提出的氢键体系中的前三个重要拓扑指标在单电子溴键体系中的重现性进行了探讨.     

Eu(C10H9N2O4)(C10H8N2O4)(H2O)3]•0.5bipy•3H2O配合物的合成、晶体结构及荧光性质

在水-乙醇混合体系中, 以2-羰基丙酸水杨酰腙(C₁₀H₁₀N₂O₄)、2,2-联吡啶(C₁₀H₈N₂, 简写bipy)与Eu(NO₃)₃•4H₂O反应, 首次培养出黄色单晶[Eu(C₁₀H₉N₂O₄)(C₁₀H₈N₂O₄)(H₂O)₃]•0.5bipy•3H₂O. 该晶体属三斜晶系, 空间群为P-1, 晶胞参数a＝0.93392(16) nm, b＝1.3100(2) nm, c＝1.3895(2) nm, α＝97.205(3)°, β＝105.411(2)°, γ＝106.364(2)°, V＝15.35(2) nm³, Z＝2, μ＝2.118 mm^－1, D_c＝1.686 Mg/m³, F(000)＝786, R＝0.0116, wR＝0.0507, GOF＝0.995. 晶体测试结果表明, 该单晶结构为铕的9配位配合物, 两个2-羰基丙酸水杨酰腙分别以负一价和负二价酮式和三个水分子同时参与配位; 每个2-羰基丙酸水杨酰腙中的羧基氧、酰胺基中的羰基氧和C＝N中的氮与Eu^3＋配位, 形成两个共边的稳定五元环, 另三个配位原子则分别来自三个水分子中的氧原子, 该配合物在空间呈扭曲的单帽四方反棱柱, 而在不对称单位中还有游离的一个2,2-联吡啶分子和三个水分子, 这些游离分子与配位分子之间存在大量分子内和分子间氢键, 整个分子在空间呈三维网状结构. 发光性能测试表明该配合物具有很好的荧光性质.     

Eu(C10H9N2O4)(C10H8N2O4)(H2O)3]•0.5bipy•3H2O配合物的合成、晶体结构及荧光性质

在水-乙醇混合体系中, 以2-羰基丙酸水杨酰腙(C₁₀H₁₀N₂O₄)、2,2-联吡啶(C₁₀H₈N₂, 简写bipy)与Eu(NO₃)₃•4H₂O反应, 首次培养出黄色单晶[Eu(C₁₀H₉N₂O₄)(C₁₀H₈N₂O₄)(H₂O)₃]•0.5bipy•3H₂O. 该晶体属三斜晶系, 空间群为P-1, 晶胞参数a＝0.93392(16) nm, b＝1.3100(2) nm, c＝1.3895(2) nm, α＝97.205(3)°, β＝105.411(2)°, γ＝106.364(2)°, V＝15.35(2) nm³, Z＝2, μ＝2.118 mm^－1, D_c＝1.686 Mg/m³, F(000)＝786, R＝0.0116, wR＝0.0507, GOF＝0.995. 晶体测试结果表明, 该单晶结构为铕的9配位配合物, 两个2-羰基丙酸水杨酰腙分别以负一价和负二价酮式和三个水分子同时参与配位; 每个2-羰基丙酸水杨酰腙中的羧基氧、酰胺基中的羰基氧和C＝N中的氮与Eu^3＋配位, 形成两个共边的稳定五元环, 另三个配位原子则分别来自三个水分子中的氧原子, 该配合物在空间呈扭曲的单帽四方反棱柱, 而在不对称单位中还有游离的一个2,2-联吡啶分子和三个水分子, 这些游离分子与配位分子之间存在大量分子内和分子间氢键, 整个分子在空间呈三维网状结构. 发光性能测试表明该配合物具有很好的荧光性质.     

CH2CO＋CH2的多通道反应的理论研究

利用密度泛函(DFT)和自然键轨道理论(NBO)及高级电子耦合簇[CCSD(T)]和电子密度拓扑(AIM)方法, 对单重态和三重态CH₂与CH₂CO反应的微观机理进行了研究. 在B3LYP/6-311＋G(d,p)水平上优化了反应通道各驻点的几何构型. 在CCSD(T)/6-311＋G(d,p)水平上计算了各物种的单点能量, 并对总能量进行了校正. 计算表明, 单重态CH₂与CH₂CO的C—H键可发生插入反应, 与C＝C、C＝O可发生加成反应, 存在三条反应通道, 产物为CO和C₂H₄, 从能量变化和反应速控步骤能垒两方面考虑, 反应II更容易发生. 对反应通道中的关键点进行了自然键轨道及电子密度拓扑分析. 三重态CH₂与CH₂CO的反应存在三条反应通道, 一条是与C-H键的插入反应, 另一条是三重态CH₂与C＝C发生加成反应, 产物为CO和三重态C₂H₄, 通道II势垒较低, 更容易发生. 最后一条涉及双自由基的反应活化能最大, 最难发生.     

Pd(111), Pd(100)及Pd(110)表面H2和O2直接合成H2O2的密度泛函理论研究

采用周期性密度泛函理论研究了H₂和O₂在Pd(111),Pd(100)及Pd(110)表面上直接合成H₂O₂的反应机理,对反应的主要基元步骤进行了计算和分析.结果表明,Pd(111)表面对H₂O₂直接合成的催化选择性最好,表面原子密度较低的Pd(100)表面和Pd(110)表面上含有O-O键的表面物种解离严重,不利于H₂O₂的生成.H₂O₂的选择性与含有O-O键表面物种的O-O键能和表面物种的结合能有关.含有O-O键的表面物种在表面的结合能越大,越容易发生解离,不利于形成H₂O₂.     

含二维水网的三维超分子[Ni(phen)2(H2O)2][Ni(PDC)2]•7H2O

在水溶液中合成了离子型配合物[Ni(phen)₂(H₂O)₂][Ni(PDC)₂]•7H₂O (H₂PDC＝吡啶-2,6-二甲酸, phen＝1,10-菲啰啉). 通过元素分析、红外光谱、单晶X射线衍射以及热重分析对配合物进行了表征. 晶体数据解析表明, 化合物属于三斜晶系, 空间群为P1, a＝1.0092(4) nm, b＝1.4599(6) nm, c＝1.4933(5) nm, α＝73.982(2)°, β＝78.652(2)°, γ＝75.184(3)°, V＝2.0256(13) nm³, Z＝2, F(000)＝1004, μ＝1.014 mm^－1, R₁＝0.0538, wR₂＝0.1493. 配合物中的结晶水分子形成一个(H₂O)₁₂水簇, (H₂O)₁₂水簇通过氢键连接为二维水网, 最终构成三维超分子网络.     

一个新的夹心型杂多钨酸盐Na6(C5N2H7){[Na(H2O)2]3Co(H2O)5-[Co(H2O)]3(AsW9O33)2}•27H2O的晶体结构及性质

在pH＝7.5的水溶液中, Na₂WO₄•2H₂O, NaAsO₂, CoCl₂•6H₂O与对氨基吡啶反应, 得到了一种新的夹心型杂多钨酸盐Na₆(C₅H₇N₂){[Na(H₂O)₂]₃Co(H₂O)₅[Co(H₂O)]₃(AsW₉O₃₃)₂}•27H₂O单晶, 用X射线单晶衍射法及元素分析确定了其结构, 晶体属三斜晶系, P 空间群, 其晶胞参数为: a＝1.3276(8) nm, b＝1.7581(10) nm, c＝2.4381(14) nm, α＝70.954(9)°, β＝86.663(9)°, γ＝72.885(9)°, V＝5.136(5) nm³, Z＝2, R₁＝0.0608, wR₂＝0.0848 [I＞2σ(I)]. 在{[Na(H₂O)₂]₃Co(H₂O)₅[Co(H₂O)]₃(AsW₉O₃₃)₂}^7－阴离子中, 一个Co^2＋与聚阴离子{[Na(H₂O)₂]₃[Co(H₂O)]₃(AsW₉O₃₃)₂}^9－的一个端基氧共价连接, Co^2＋呈现出5和6两种配位数, 质子化的氨基吡啶正离子作为抗衡离子存在于晶体之中. 对标题化合物进行了IR, UV-Vis, TG-DSC表征. 对该化合物、Na₂WO₄•2H₂O及CoCl₂•6H₂O催化H₂O₂氧化乙醛的活性进行了比较研究, 该化合物的催化活性远优于简单化合物Na₂WO₄•2H₂O和CoCl₂•6H₂O.     

Regular/abnormal variation in the strength and nature of the halogen bond between H2Te and the dihalogens: Prominent effect of methyl substituents

The halogen-bonded complexes between H₂Te/Me₂Te and the dihalogen molecules XY (XY = F₂, Cl₂, Br₂, I₂, ClF, ClBr, BrF, BrCl, BrI, IF, ICl, IBr) have been studied to investigate the dependence of its strength and nature on the halogen donor X and its adjoining atom Y, as well as the methyl groups in the electron donor. The interaction energy varies between −1.7 and − 43.5 kcal/mol, indicating that the Te atom in H₂Te/Me₂Te has a strong affinity for the dihalogen molecules. For the H₂Te-XY complex, the halogen bond is stronger for the heavier halogen donor X atom and the strong electron-withdrawing group Y. However, for Me₂Te-XY, the halogen bond is stronger for the lighter halogen donor X atom. The H₂Te/Me₂Te-F₂ complex has the largest interaction energy, although the σ-hole on F₂ is the smallest in magnitude. In most of the complexes, the electrostatic and polarization contributions to the binding strength are similar in magnitude. However, for H₂Te/Me₂Te-F₂, the polarization contribution is much larger than the electrostatic contribution, with a significant contribution from charge transfer.     

A computational study on the nature of the halogen bond between sulfides and dihalogen molecules

The characteristics and nature of the halogen bonding in a series of B···XY (B = H₂S, H₂CS, (CH₂)₂S; XY = ClF, Cl₂, BrF, BrCl, Br₂) complexes were analyzed by means of the quantum theory of “atoms in molecules” (QTAIM) and “natural bond orbital” (NBO) methodology at the second-order Møller-Plesset (MP2) level. Electrostatic potential, bond length, interaction energy, topological properties of the electron density, the dipole moment, and the charge transfer were investigated systematically. For the same electron donor, the interaction energies follows the B···BrF > B···ClF > B···BrCl > B···Br₂ > B···Cl₂ > B···ClBr order. For the same electron acceptor, the interaction energies increase in the sequence of H₂S, H₂CS, and (CH₂)₂S. Topological analyses show these halogen bonding interactions belong to weak interactions with an electrostatic nature. It was found that the strength of the halogen-bonding interaction correlates well with the electrostatic potential associated with halogen atom and the amount of charge transfer from sulfides to dihalogen molecules, indicating that electrostatic interaction plays an important role in these halogen bonds. Charge transfer is also an important factor in the halogen bonds involved with dihalogen molecules.     

Theoretical study on intermolecular interactions in BrF/HnX adducts

Equilibrium geometries, interaction energies, and charge transfer for the intermolecular interactions between BrF and H_nX (HF, H₂O, and NH₃) were studied at the MP2/6-311++G(3d,3p) level. The halogen-bonded geometry and hydrogen-bonded geometry are observed in these interactions. The calculated interaction energies show that the halogen-bonded structures are more stable than the corresponding hydrogen-bonded structures. To study the nature of the intermolecular interactions, symmetry-adapted perturbation theory (SAPT) calculations were carried out and the results indicate that the halogen bonding interactions are dominantly inductive energy in nature, while electrostatic energy governs the hydrogen bonding interactions.     

Cooperativity between the Halogen Bond and the Hydrogen Bond in H3N⋅⋅⋅XY⋅⋅⋅HF Complexes (X,Y=F,Cl, Br)

Ab initio calculations are used to provide information on H₃N???XY???HF triads (X, Y=F, Cl, Br) each having a halogen bond and a hydrogen bond. The investigated triads include H₃N???Br₂‐HF, H₃N???Cl₂???HF, H₃N???BrCI???HF, H₃N???BrF???HF, and H₃N???ClF???HF. To understand the properties of the systems better, the corresponding dyads are also investigated. Molecular geometries, binding energies, and infrared spectra of monomers, dyads, and triads are studied at the MP2 level of theory with the 6‐311++G(d,p) basis set. Because the primary aim of this study is to examine cooperative effects, particular attention is given to parameters such as cooperative energies, many‐body interaction energies, and cooperativity factors. The cooperative energy ranges from ?1.45 to ?4.64 kcal mol^?1, the three‐body interaction energy from ?2.17 to ?6.71 kcal mol^?1, and the cooperativity factor from 1.27 to 4.35. These results indicate significant cooperativity between the halogen and hydrogen bonds in these complexes. This cooperativity is much greater than that between hydrogen bonds. The effect of a halogen bond on a hydrogen bond is more pronounced than that of a hydrogen bond on a halogen bond.     

Halogen bonding with the halogenabenzene bird structure,halobenzene, and halocyclopentadiene

The ability of the “bird-like” halogenabenzene molecule, referred to as X-bird (XCl to At), to form halogen-bonded complexes with the nucleophiles H₂O and NH₃ was investigated using double-hybrid density functional theory and the aug-cc-pVTZ/aug-cc-pVTZ-PP basis set. The structures and interaction energies were compared with 5-halocyclopenta-1,3-diene (halocyclopentadiene; an isomer of halogenabenzene) and halobenzene, also complexed with H₂O and NH₃. The unusual structure of the X-bird, with the halogen bonded to two carbon atoms, results in two distinct σ-holes, roughly at the extension of the C-X bonds. Based on the behavior of the interaction energy (which increases for heavier halogens) and van der Waals (vdW) ratio (which decreases for heavier halogens), it is concluded that the X-bird forms proper halogen bonds with H₂O and NH₃. The interaction energies are larger than those of the halogen-bonded complexes involving halobenzene and halocyclopentadiene, presumably due to the presence of a secondary interaction. © 2019 Wiley Periodicals, Inc.     

CH3SH和CH3SLi分子间的锂键和氢键共存型相互作用

在CH₃SLi＋CH₃SH势能面上求得锂键和氢键共存型复合物的两种稳定构型. 频率分析表明, 与单体相比复合物中S(5)—Li(6)键伸缩振动频率发生红移, 而C(8)—H(10)键伸缩振动频率发生蓝移. 经B3LYP/6-311＋＋G**, MP2/6-311＋＋G**及MP2/AUG-CC-PVDZ水平计算的含基组重叠误差(BSSE)校正的复合物?中相互作用能分别为－58.99, －57.87和－62.89 kJ•mol^－1. 采用自然键轨道(NBO)理论, 分析了复合物中单体轨道间的电荷转移, 电子密度重排及其与相关键键长变化的本质等. 采用分子中的原子(AIM)理论分析了复合物中氢键和锂键的电子密度拓扑性质．在极化连续模型(PCM)下, 考察了溶剂化效应. 结果表明, 所考察的水、二甲亚砜、乙醇和乙醚等四种溶剂均使单体间的相互作用能增大, 且溶剂对复合物中的锂键结构及其振动频率具有显著的影响, 而对复合物中的氢键的振动频率影响不大.     

H2CCF自由基与HNCO反应机理的理论研究

采用密度泛函理论的B3LYP方法, 在6-311＋＋G(d,p)基组水平上研究了H₂CCF自由基与HNCO的微观反应机理, 优化了反应过程中的反应物、中间体、过渡态和产物, 为了获得更精确的能量信息, 还在QCISD(T)/6-311＋＋G(d,p)基组水平上计算了各物质的能量．振动分析结果和IRC分析结果证实了中间体和过渡态的真实性, 计算所得的成键临界点电荷密度的变化也确认了反应过程．对于H₂CCF自由基与HNCO反应, 我们找到了六条可行的反应通道, 结果分析表明通道H₂CCF＋HNCO→IM3→TS5→H₂CCFH＋NCO控制步骤活化能最低, 是该反应的主要通道, 在此反应过程中有稳定的氢键复合物IM3生成, 还表现出氢原子迁移的反应特征．     

Ab initio and AIM studies on typical π‐type and pseudo‐π‐type halogen bonds: Comparison with hydrogen bonds

Series of typical π‐type and pseudo‐π‐type halogen‐bonded complexes B ··· ClY and B ··· BrY and hydrogen‐bonded complex B ··· HY (B = C₂H₄, C₂H₂, and C₃H₆; Y = F, Cl, and Br) have been investigated using the MP2/aug‐cc‐pVDZ method. A striking parallelism was found in the geometries, vibrational frequencies, binding energies, and topological properties between B ··· XY and B ··· HY (X = Cl and Br). It has been found that the lengths of the weak bond d(X ··· π)/d(H ··· π), the frequencies of the weak bond ν(X ··· π)/ν(H ··· π), the frequency shifts Δν(X? Y)/Δν(H? Y), the electron densities at the bond critical point of the weak bonds ρ_c(X ··· π)/ρ_c(H ··· π), and the electron density changes Δρ_c(X? Y)/Δρ_c(H? Y) could be used as measures of the strengths of typical π‐type and pseudo‐π‐type halogen/hydrogen bonds. The typical π‐type and pseudo‐π‐type halogen bond and hydrogen bond are noncovalent interactions. For the same Y, the halogen bond strengths are in the order B ··· ClY < B ··· BrY. For the same X, the halogen bond strength decreases according to the sequence F > Cl > Br that is in agreement with the hydrogen bond strengths B ··· HF > B ··· HCl > B ··· HBr. All of these typical π‐type and pseudo‐π‐type hydrogen‐bonded and halogen‐bonded complexes have the “conflict‐type” structure. Contour maps of the Laplacian of π electron density indicate that the formation of B ··· XY halogen‐bonded complex and B ··· HY hydrogen‐bonded complex is very similar. Charge transfer is observed from B to XY/HY and both the dipolar polarization and the volume of the halogen atom or hydrogen atom decrease on B ··· XY/B ··· HY complex formation. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011