Isolation, characterization and cross-amplification of polymorphic microsatellite loci in Laelia speciosa (Orchidaceae)

Laelia speciosa is an endangered epiphytic orchid endemic to central Mexico. Here, we report on the development of 14 perfect and imperfect microsatellite repeat loci for this species. Numbers of alleles ranged from two to 16 and levels of observed heterozygosities among the 14 loci ranged from 0.28 to 1.00 across two widely divergent populations. All loci were also tested for cross-amplification in four other Laelia species and other selected genera of the subtribe Laeliinae.     

The freshwater Copepoda (Crustacea) of Costa Rica with notes on some species

Sixteen species of Copepoda were recorded in this first detailed study of Costa Rican zooplankton. Two of these species are halophile. Notes are given on some of the species and their distribution. One new species found will be described elsewhere. The Costa Rican fauna resembles in composition the fauna of other Central American and Caribbean regions. Relatively few species were recorded. This is partly due to a low intensity of sampling but also to the paucity of lentic habitats. The occurrence of two circumtropical species of Mesocyclops is interesting.

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Résumé 16 espèces de Copépodes ont été inventoriées au cours d'une première étude détaillée du zooplankton dulcaquicole de Costa Rica. Deux des espèces trouvées sont halophiles. Des remarques sont faites a propos de quelques espèces et de leur répartition. Une nouvelle espèce est nouvelle — elle sera décrite par ailleurs. La fauna de Costa Rica ressemble par sa composition à celle des autres pays d'Amérique centrale et des îles caraibes. Relativement peu d'espèces sont notées. La faible intensité de l'échantillonnage mais aussi la pauvreté en habitats limniques en sont responsables. La présence de deux espèces circumtropicales de Mesocyclops est intéressante.

     

Reproductive biology and pollination mechanisms of Epidendrum secundum (Orchidaceae). Floral variation: a consequence of natural hybridization?

The phenology, flower morphology, pollination mechanism and reproductive biology of Epidendrum secundum were studied in a semi‐deciduous forest at the Serra do Japi (SJ), and in the Atlantic rain forest of Picinguaba, both natural reserves in the State of São Paulo, southeastern Brazil. E. secundum flowers all year round, with a flowering peak between September and January. This species is either a lithophytic or terrestrial herb in the SJ, whereas, in Picinguaba, it grows mainly in disturbed areas along roadsides. E. secundum is pollinated by several species of diurnal Lepidoptera at both study sites. In Picinguaba, where E. secundum is sympatric with E. fulgens and both share the same pollinators, pollen transference between these two species was recorded. E. secundum is self‐compatible but pollinator‐dependent. It is inter‐compatible with E. fulgens, producing fertile seeds. In contrast to the population of the SJ, in the Picinguaba region, floral morphology is quite variable among plants and some individuals present flowers with characteristics in‐between both sympatric species, suggesting that natural hybridization occasionally occurs. The anthropogenic perturbation is probably the cause of the occurrence of E. secundum in the Picinguaba region, enabling its contact with E. fulgens.     

Seasonality of reproduction by liverbearing fishes in tropical rainforest streams

Reproductive ecology, population structure, and diets of three common livebearing poeciliid fishes (Alfaro cultratus, Phallichthys amates, Poecilia gilli) from rainforest streams in Costa Rica were investigated over ten continuous months. The region experiences little annual temperature variation, and although monthly rainfall is continuous each year, two brief dry seasons typically occur. Monthly changes in indices of ovarian condition, percentages of females with developing embryos, and population size structure revealed that reproductive output by females of all three species varied seasonally. Based on testicular condition, males were reproductively active year-round, however the mean gonadal index for males of two algivorous species showed low levels of seasonal cycling that largely coincided with female variation in reproductive effort. All three species had seasonal differences in the female size-brood size relationship, whereby larger females tended to carry more embryos during the wet season. Several important adult and neonate food resources are more available in the flooded forest during the wet season, which is also the period when conspecifics and predators are at their lowest per-area densities. Three hypotheses are discussed: (1) brood size in relation to conspecific density-mating frequency, (2) reproductive allocation in response to variation in adult food resources, and (3) selection for greater reproductive effort during conditions optimal for juvenile growth and survival. Data for Alfaro were consistent with the latter two hypotheses. In Phallichthys and Poecilia, diets were poorer during wet seasons, indicating that reproductive effort does not coincide with availability of adult food resources, and that selection probably favors greater reproductive effort during periods optimal for juvenile growth and survival.     

The East Indian Diaspora in Costa Rica: Inbreeding Avoidance, Marriage Patterns, and Cultural Survival

Anthropologists have long been interested in the survival of Indian cultural traits in the New World. In this article, we present results of an ongoing project with a Costa Rican community that descends from East Indian indentured servants. We focus on the group's marriage patterns and how these patterns might have helped keep the community as a cohesive ethnic group. We investigate the group's level of inbreeding by computing the inbreeding coefficient using two different methods. We show that the community has been successful at keeping its inbreeding low, despite its small size, by allowing marriage with nonmembers of the community. We propose that unless consanguineous marriages are allowed virtually all of the community's marriages will be with noncommunity members. Absorption into tourism, as well as the community's staunch avoidance of consanguineous marriages and virtually universal marriage with noncommunity members, will likely contribute to their disappearance as a viable ethnic group.     

Diversity and spatial clustering of shade trees affect cacao yield and pathogen pressure in Costa Rican agroforests

The importance of the spatial organisation of individuals in explaining species coexistence within a community is widely recognised. However, few analyses of spatial structure have been performed on tropical agroforests.The main objective of this study was to highlight the links between spatial organisation of shade trees on the one hand, and shade tree species richness and cacao yield on the other, using data from 29 cacao agroforests in Costa Rica.A method of spatial statistics, Ripley's K-function, was used to analyse the spatial organisation of shade and cacao trees in the study plots. For each stand, the X and Y coordinates of ≥2.5-m-tall trees were recorded. In each plot we also assessed shade tree species richness and cacao yield (with total number of pods = number of pods damaged by frosty pod rot + number of healthy pods).Three types of stands were identified: the first was characterised by significant clustering of shade trees, the highest shade tree species richness (S = 6), and the highest number of damaged pods (139 pods ha^?1 year^?1). The second type was characterised by random spatial organisation of shade trees. The third type showed a trend towards regular organisation. Species richness of shade trees did not differ significantly between the last two types (S = 4 for both), nor did the number of damaged pods (56 pods ha^?1 year^?1 and 67 pods ha^?1 year^?1 respectively).Although the trends were not statistically significant for all the variables in our data set, the clustered spatial structure appears to favour a synergy between environmental (tree species richness), and provisioning (cacao production) services.     

When family matters: an analysis of Thelotremataceae (Lichenized Ascomycota: Ostropales) as bioindicators of ecological continuity in tropical forests

We analysed patterns of habitat and microhabitat preferences of 19 families (comprising 135 genera and 950 species) of crustose, corticolous lichens in Costa Rica (Arthoniaceae, Arthopyreniaceae, Coenogoniaceae, Graphidaceae, Lecanoraceae, Letrouitiaceae, Monoblastiaceae, Pertusariaceae, Physciaceae, Pilocarpaceae, Porinaceae, Pyrenulaceae, Ramalinaceae, Roccellaceae, Strigulaceae, Teloschistaceae, Thelenellaceae, Thelotremataceae, Trypetheliaceae), in order to test whether Thelotremataceae are suitable predictors of undisturbed tropical rain forest and can be used as bioindicators of ecological continuity. The dataset consisted of 12,215 specimen samples and six environmental parameters recorded for each sample (altitude, degree of seasonality, vegetation type, disturbance level, substrate nature, light exposure), which were analysed by a multivariate approach using principal component analysis (PCA). The analysis showed that three of the 19 families, Letrouitiaceae, Porinaceae, and Thelotremataceae, showed significant preferences for undisturbed primary to old growth secondary forest, fully shaded to semi-exposed microhabitats, and the bark of mature tree trunks, parameters assumed to be correlated with ecological continuity of closed rain forest habitats. Thelotremataceae had broader altitudinal range than Letrouitiaceae and Porinaceae and significantly higher genus and species diversity (16 genera, 130 species) compared to Porinaceae (4 genera, 40 species) and Letrouitiaceae (1 genus, 5 species). Our results support the hypothesis that Thelotremataceae perform best as predictors of undisturbed dry and lowland to montane rain forest and are the most suitable lichen bioindicators of ecological continuity in these ecosystems. In contrast, Lecanoraceae, Pertusariaceae, Physciaceae, and Teloschistaceae, were found to be predictors of disturbed and pioneer (micro-)habitats. We also found that, among a variety of parameters tested, the Index of Ecological Continuity (IEC), adapted to the use of Thelotremataceae in tropical forests, performs best in terms of predicting disturbance levels and site history. A semi-taxonomic approach identifying morphotypes rather than genera or species yielded the same results, making this method suitable for a broader spectrum of potential users.     

Conservation of tropical forest birds in countryside habitats

The pressing need to increase agricultural production often seems at odds with conserving biodiversity. We find that if managed properly, the tropical countryside may provide a substantial opportunity for tropical bird conservation. We detected 144 bird species from 29 families in agricultural areas outside of extensive native forest in southern Costa Rica. The majority of the species detected were observed foraging, often kilometres from extensive native forest. We estimate that 46% of those native to this region (excluding nocturnal species and waterfowl) are utilizing the countryside in some manner. Forecasts of biodiversity change under various land-use scenarios indicate that policies that affect habitat composition could greatly impact the persistence of these species in the countryside. In particular, if tall trees and edge habitats were removed from this landscape, we predict that bird richness in the countryside would decline by approximately 40%.     

A preliminary survey of the Chironomidae (Diptera) of Costa Rica,with emphasis on the lotic fauna

Extensive collections of Chironomidae were made in Costa Rica, Central America, during 1986 and 1987. Fifty-five genera and at least 148 species belonging to the subfamilies Podonominae, Tanypodinae, Orthocladiinae and Chironomidae were found. Chironominae and Orthocladiinae predominated. Only one species of Podonominae was collected. Tanypodinae was represented by many genera, but species richness was low.Cricotopus was the most widespread and diverse genus of Orthocladiinae. Among the Chironominae the generaPolypedilum, Pseudochironomus, Tanytarsus andRheotanytarsus showed high species richness. Several species were collected that could not be assigned to genus. A number of range extensions were recorded for taxa found in the Neotropical region for the first time and for Neotropical taxa recorded outside of South America for the first time. The Costa Rican chironomid fauna consists of cosmopolitan, holarctic and neotropical components. There is probably an endemic Central American chironomid fauna at the species level.     

Does leaf quality mediate the stimulation of leaf breakdown by phosphorus in Neotropical streams?

1. Lowland tropical streams have a chemically diverse detrital resource base, where leaf quality could potentially alter the effect of high nutrient concentrations on leaf breakdown. This has important implications given the extent and magnitude of anthropogenic nutrient loading to the environment. 2. Here, we examine if leaf quality (as determined by concentrations of cellulose, lignin and tannins) mediates the effects of high ambient phosphorus (P) concentration on leaf breakdown in streams of lowland Costa Rica. We hypothesised that P would have a stronger effect on microbial and insect processing of high‐ than of low‐quality leaves. 3. We selected three species that represented extremes of quality as measured in leaves of eight common riparian species. Species selected were, from high‐ to low‐quality: Trema integerrima > Castilla elastica > Zygia longifolia. We incubated single‐species leaf packs in five streams that had natural differences in ambient P concentration (10–140 μg soluble reactive phosphorus (SRP) L^?1), because of variable inputs of solute‐rich groundwater and also in a stream that was experimentally enriched with P (approximately 200 μg SRP L^?1). 4. The breakdown rate of all three species varied among the six streams: T. integerrima (k‐values range: 0.0451–0.129 day^?1); C. elastica (k‐values range: 0.0064–0.021 day^?1); and Z. longifolia (k‐values range: 0.002–0.008 day^?1). Both ambient P concentration and flow velocity had significant effects on the breakdown rate of the three species. 5. Results supported our initial hypothesis that litter quality mediates the effect of high ambient P concentration on leaf processing by microbes and insects. The response of microbial respiration, fungal biomass and invertebrate density to high ambient P concentration was greater in Trema (high quality) than in Castilla or Zygia (low quality). Variation in flow velocity, however, confounded our ability to determine the magnitude of stimulation of breakdown rate by P. 6. Cellulose and lignin appeared to be the most important factors in determining the magnitude of P‐stimulation. Surprisingly, leaf secondary compounds did not have an effect. This contradicts predictions made by other researchers, regarding the key role of plant secondary compounds in affecting leaf breakdown in tropical streams.     

Sustainable ecotourism in Costa Rica: the Monteverde Cloud Forest Preserve

The paper discusses the sustainability of the Monteverde Cloud Forest Preserve in the context of Costa Rican ecotourism. While the history of the Preserve is somewhat unique, the analysis of visitation, financial, ecological and economic factors provides a convincing case that tourism at the Preserve is sustainable. The experience of the Preserve is also put in the context of Costa Rican ecotourism, particularly to the national parks. The paper concludes that the Preserve has played a very important role in the development of Costa Rica as an ecotourism destination. Nonetheless, the failure of experience at the Preserve to inform recent changes in national park pricing policy reveal that Costa Rica has yet to fully capitalize on the experience gained and lessons learned at the Preserve.     

Diversity of mesophilic clostridia in Costa Rican soils

Costa Rica is located in the Tropic, one of the most biologically diverse regions of the world; its soil is an important epicenter of biodiversity and Clostridium spp. are among the most frequent bacteria. The diversity of clostridia in Costa Rican soils and its possible association with geographic zone, pH or type of soil was studied in 117 soil samples: 18 from the Atlantic Zone, 30 from the Central Plateau, 30 from the Dry Pacific, 13 from the North Zone, and 26 from the South Pacific. The pH and the mesophilic clostridia species were determined for each sample. For bacterial isolation, a selective methodology for spores and pre-reduced anaerobically sterilized media were used. A total of 1945 strains of clostridia were isolated, 98% were identified and corresponded to 54 species; the most frequent species were C. subterminale (56%), C. oceanicum (51%), C. bifermentans and C. glycolicum (50%, each), C. sporogenes (49%), and C. sordellii (42%). An average of 7.1 species per sample was obtained; the Atlantic Zone showed the greatest diversity: 8.6 species per sample and a total of 45 species. Except for C. chauvoei, all described toxigenic clostridia species were isolated; C. sordellii (42%) and C. perfringens (38%) were the most frequent. No statistical relation could be established between geographic zone or type of soil and any species, showing that clostridia had a high adaptation capability to grow in different soil conditions; only some clostridia were isolated from very acidic samples while others from soils with a wide range of pH. In general, a uniform distribution of most species and a high variety of clostridia in Costa Rican soils were observed, in agreement with the high biodiversity described for other living beings in this country.     

Jumping and the aerial behavior of aquatic mayfly larvae (Myobaetis ellenae,Baetidae)

Mayfly larvae generally are aquatic, but some madicolous taxa (i.e., living in thin water films) crawl over rocks within streams and waterfalls. When startled, these larvae can break the water film, jump, and enter an aerial phase of locomotion. Because mayfly larvae have been suggested as potential exemplars for the origin of insect wings as tracheal gills, and furthermore represent the most basal extant lineage of pterygotes, we analyzed jumping behavior and free-fall trajectories for one such species of mayfly (Myobaetis ellenae, Baetidae) in Costa Rica. Jumping was commonplace in this taxon, but was undirected and was characterized by body spinning at high angular velocities. No aerodynamic role for the tracheal gills was evident. By contrast, jumping by a sympatric species of bristletail (Meinertellus sp., Archaeognatha) consistently resulted in head-first and stable body postures during aerial translation. Although capable of intermittently jumping into the air, the mayfly larvae could neither control nor target their aerial behavior. By contrast, a stable body posture during jumps in adult bristletails, together with the demonstrated capacity for directed aerial descent in arboreal representatives of this order, support ancestrally terrestrial origins for insect flight within the behavioral context of either jumping or falling from heights.     

Emergy analysis of biogas production and electricity generation from small-scale agricultural digesters

An emergy analysis was performed to assess the relative sustainability and environmental impact of small-scale energy production using Taiwanese model plug-flow anaerobic digesters to treat livestock manure in Costa Rica. Emergy analysis quantifies all inputs to a system by converting them to solar energy equivalents, thus allowing for direct comparison of the diverse inputs of renewable energies, human labor and economic goods needed to construct and maintain anaerobic digestion systems. The digesters were located on the campus of EARTH University, Costa Rica, and the biogas was utilized to power a 40 kW generator that supplies electricity for farm operations. Separate emergy analyses were performed for the biogas production and the combination of biogas production and generation of electricity. Manure was the largest input in both analyses, accounting for 85.3% of the annual emergy input for biogas production and 66.9% for electricity generation from the biogas. The fraction of emergy inputs from renewable sources (ΦR) was 66% for biogas production and 52% for electricity generation from the biogas. The transformities of biogas and electricity generation from the biogas were 5.23E+04 sej/J and 1.01E+06 sej/J respectively. The emergy yield ratios (EYR) were 2.93 for biogas production and 2.07 for electricity generation indicating that these digesters efficiently match purchased resources and renewable energies to produce energy from livestock manure. The generation of electricity from the biogas resulted in a decrease in the emergy sustainability index (ESI) from 5.67 to 2.22 and an increase in the environmental loading ratio (ELR) from 0.52 to 0.93. Using a generator to convert the biogas to electricity does decrease the sustainability of the system, largely due to the high emergy value associated with the electrical generation equipment and machinery, but these results demonstrate that the production of biogas and the generation of electricity from Taiwanese model digesters in Costa Rica are environmentally sustainable processes that result in the production of energy that is largely dependent on renewable and recycled energies.