Phylogenetic analysis of Micrathena and Chaetacis spiders (Araneae: Araneidae) reveals multiple origins of extreme sexual size dimorphism and long abdominal spines

The phylogenetic relationships amongst the New World spiny orb‐weaving spiders Micrathena and Chaetacis were assessed through parsimony and Bayesian analyses of morphological characters. A total of 146 characters was scored for ten outgroup taxa and 37 Micrathena and four Chaetacis species. The results indicate that Chaetacis nests within Micrathena and we propose Chaetacis as a junior synonym of Micrathena. Twelve subgeneric species groups of Micrathena are recognized and diagnosed. Species with extremely long spines evolved at least eight times in the genus and we suggest that this may be related to antipredator defences. Micrathena is primitively sexually monomorphic and extreme sexual size dimorphism has arisen at least six times in the genus. Most of these events are because of enlargement of the female in relation to the ancestral size, although in two cases sexual dimorphism was attained through male reduction, adding more data to the ‘giant females’ vs. ‘dwarf males’ controversy. The genus is probably of South American origin and has repeatedly invaded Central and North America. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 14–53.     

Systematics and cladistics of a new Naupactini genus (Coleoptera: Curculionidae: Entiminae) from the Andes of Colombia and Ecuador

A new genus of broad‐nosed weevils belonging to the tribe Naupactini (Coleoptera: Curculionidae) is described, based on six species from the Páramo–Puna subregion (Andean region) of South America. Three species are new and three have been transferred from the genus Asymmathetes (Asymmathetes nigrans, Asymmathetes rugicollis, and Asymmathetes vulcanorum). The new genus is recognized by the black, denuded, and shiny tegument, the well‐developed pre‐epistome, the elytral base curved backwards on middle, the reduction of the hindwings, and the widely separated procoxae, closer to the anterior than to the posterior margin of the prosternum. A cladistic analysis of the six species of the new genus plus five out‐groups (Amitrus, Amphideritus, Asymmathetes, Melanocyphus, and Trichocyphus), using 49 morphological characters, resulted in a single cladogram. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 54–71.     

A review of the New Zealand Chirostylidae (Anomura: Galatheoidea) with description of six new species from the Kermadec Islands

Prior to the present study, seven species of deep‐sea Chirostylidae (‘squat lobsters’), were known from New Zealand: Gastroptychus novaezelandiae, Uroptychodes spinimarginatus, Uroptychus australis, Uroptychus maori, Uroptychus novaezelandiae, Uroptychus politus, and Uroptychus tomentosus. All species are examined from type material and discussed, original illustrations supplemented, and new records provided where available. Uroptychus maori and Uroptychus novaezelandiae are re‐described. The chirostylid fauna of the Kermadec Islands, a remote group of islands north‐east of New Zealand, is studied. Uroptychus alcocki and Uroptychus scambus are reported for the first time from New Zealand, and six new species of the genus Uroptychus are described. Distributional patterns of New Zealand species are discussed and a key to New Zealand Uroptychus species is presented. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 542–582.     

Taxonomic review of Bourguyiinae,cladistic analysis,and a new hypothesis of biogeographic relationships of the Brazilian Atlantic Rainforest (Arachnida: Opiliones,Gonyleptidae)

The subfamily Bourguyiinae Mello‐Leitão, 1923 (Gonyleptidae) is revised, and both phylogenetic and biogeographic hypotheses are proposed. Bourguyiinae is monophyletic, and is the sister group of the remainder of the Gonyleptidae species used for analysis, except for the Metasarcinae, which collectively is the sister group of Metavononoides orientalis Mello‐Leitão, 1923 (Cosmetidae). Bourguyiinae is divided into two genera: Bourguyia (six species) and Asarcus (four species). The genus‐level synonyms proposed here are as follows: Caldasius, Styloleptes, and Stylopisthos are junior synonyms of Bourguyia; Bogdana, Cnemoleptes, and Opisthoplites are junior synonyms of Asarcus. The species synonyms proposed here are as follows: Afranius amarali Mello‐Leitão, 1934 is a junior synonym of Bourguyia albiornata Mello‐Leitão, 1923 ; Drastus hamatus Roewer, 1943 and Styloleptes conspersus Piza, 1943 are junior synonyms of Bourguyia trochanteralis Roewer, 1930 ; Asarcus corallipes Simon, 1879 , Asarcus lutescens Sørensen, 1884 , Asarcus pallidus Mello‐Leitão, 1923 , and Opisthoplites ypsilon Sørensen, 1884 are junior synonyms of Asarcus longipes Kollar in Koch, 1839 ; Asarcus nigriconspersus Soares & Soares, 1945 is a junior synonym of Asarcus ingenuus Melo‐Leitão, 1940. New species described are: Bourguyia bocaina sp. nov. (Serra da Bocaina, São José do Barreiro, São Paulo), Bourguyia vinosa sp. nov. (E.B. Boracéia, Salesópolis, São Paulo), and Asarcus putunaberaba sp. nov. (Parque Nacional do Caparaó, Alto Caparaó, Minas Gerais). Bourguyiinae is endemic to the Atlantic Rainforest in the Brazilian states of Minas Gerais, Rio de Janeiro, São Paulo, and Paraná. Based on the modified data matrix of Pinto‐da‐Rocha et al., we propose a new biogeographical hypothesis for the Atlantic Rainforest. We suggest that Bourguyiinae species were originally distributed from the coastal region of Paraná to the north of Rio de Janeiro and south‐east of Minas Gerais, with subsequent dispersals both to northern and southern areas. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 319–362.     

Systematic review of a new orb‐weaving spider genus (Araneae: Araneidae), with special reference to the Australasian‐Pacific and South‐East Asian fauna

The Australasian‐Pacific and South‐East Asian species of the new orb‐weaving spider genus Plebs with Plebs eburnus (Keyserling, 1886) as type species are revised. Following this study, Plebs includes a total of 22 species of which seven are here described new. Seven species are found in Australia, two in the Pacific region (New Caledonia, Vanuatu), and two in South‐East Asia (Papua New Guinea, The Philippines). Eleven Asian species are transferred to the new genus. Plebs represent comparatively small orb‐weaving spiders of c. 1.2–15.0 mm body length with a slightly elongated abdomen and humeral (shoulder) humps. Males of most species have two to three stout setae on the ventral side of their fourth coxae. Male pedipalps are characterized by the presence of a single macroseta on the patella, the presence of a paramedian apophysis as basal extension of the conductor, and an apical tegular protrusion. The female epigyne has a scape that is generally much longer than wide. It does not have a terminal pocket and is frequently broken off in a number of species. A phylogenetic analysis of 15 species of Plebs (those for which both sexes are known), 13 Australian/Pacific orb‐weaving spider species representing the most commonly collected clades with paramedian apophysis, three species of Nearctic Eriophora Simon, 1864, and Araneus diadematus Clerck, 1758, as outgroup, identified a single synapomorphy of Plebs based on 35 morphological and three behavioural characters: a distinct, inverted U‐shaped light pattern on the ventral side of the abdomen with two additional white spots anterolateral to the spinnerets. This analysis recovered a monophyletic clade of all Asian Plebs, suggesting a single colonization event of the genus that putatively originated in Australia. Most Plebs species appear to be active during the day. They build a regular orb‐web with vertical stabilimentum in grass and low shrubs. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 279–341.     

Molecular phylogeny of the subgenus Holothuria (Selenkothuria) Deichmann, 1958 (Holothuroidea: Aspidochirotida)

The subgenus Selenkothuria comprises 12 species of tropical shallow water sea cucumbers that share morphological features, such as rods in the body wall and tube feet, modified tentacles for suspension feeding, and cryptic colours. The taxonomic status of this taxon has been controversial, but currently it is accepted as a subgenus of the genus Holothuria. Phylogenetic analyses of mitochondrial genes [cytochrome c oxidase subunit 1 (COI), 16S RNA] of ten species of Selenkothuria and related subgenera showed the polyphyly of this subgenus; monophyly was rejected by a likelihood ratio test. A geographical split divides the species of this subgenus into three different groups: one Indo‐West‐Pacific (IWP) group and two American groups. The IWP group is more closely related to Holothuria (Semperothuria) cinerascens and to other subgenera such as Roweothuria, Holothuria, and Vaneyothuria, whereas the two American groups are more closely related to each other and to some species of the subgenus Halodeima. These results suggest multiple parallel originations and diversification of ossicle morphology within the subgenus Selenkothuria. The current scheme of subgenera for the genus Holothuria is not supported, suggesting the need for a new classification. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 165 , 109–120.     

Phylogenetic interrelationships,taxonomy, and reductive evolution in the Neotropical electric fish genus Hypopygus (Teleostei,Ostariophysi, Gymnotiformes)

A phylogenetic reconstruction of the Neotropical electric fish genus Hypopygus based on 47 parsimony‐informative morphological characters is presented. A series of synapomorphies support the hypothesis of monophyly of Hypopygus, and partially resolve species‐level relationships within the genus. Hypopygus species are recognized here as miniaturized fishes based on two criteria; first, a derived condition of diminutive body size, and; second, the presence of a suite of reductive morphological characters, including partial or total losses, simplifications, and reductions of the anal‐fin rays, scales, cranial bones, and laterosensory canal system. Reductive characters associated with miniaturization comprise 45% of the total number of characters in the phylogenetic reconstruction of the genus. Miniaturization and reductive morphological evolution in Hypopygus are discussed here in the phylogenetic context. A taxonomic revision of Hypopygus is presented, in which five new species are described, two species previously assigned to the genus are redescribed, and a single known species of Stegostenopos is redescribed and included in Hypopygus as a junior synonym. Distribution maps and a key for all eight valid species of Hypopygus are provided, based on the examination of 5014 catalogued museum specimens. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 163 , 1096–1156.     

Validity of <Emphasis Type="Italic">Scorpaena jacksoniensis</Emphasis> and a redescription of <Emphasis Type="Italic">S. cardinalis</Emphasis>, a senior synonym of <Emphasis Type="Italic">S. cookii</Emphasis> (Scorpaeniformes: Scorpaenidae)

The Scorpaena cardinalis complex, including S. cardinalis, S. jacksoniensis and S. orgila, is defined. The genus Ruboralga (type species: S. jacksoniensis) is regarded as a junior synonym of Scorpaena. Scorpaena jacksoniensis Steindachner 1866, previously treated as a junior synonym of Scorpaena cardinalis Solander and Richardson 1842, is regarded here as a valid species. Scorpaena cookii Günther 1874, previously treated as a valid species, is regarded here as a junior synonym of S. cardinalis. Thus, recent recognition of the two Australasian scorpionfishes, i.e., S. cardinalis and S. cookii, are re-identified in this study as S. jacksoniensis and S. cardinalis, respectively. Scorpaena plebeia Solander 1842 is regarded as a junior synonym of S. cardinalis. Scorpaena jacksoniensis is distributed along the east coast of Australia from southern Queensland to eastern Victoria, whereas S. cardinalis occurs around northern New Zealand, the Kermadec Islands and offshore islands of the Tasman Sea. A neotype is designated for S. cardinalis. Morphological changes with growth in the two species are described in detail.     

A molecular phylogeny and a revised classification of tribe Lepisoreae (Polypodiaceae) based on an analysis of four plastid DNA regions

Phylogenetic relationships within the palaeotropical tribe Lepisoroideae (Polypodiaceae) were investigated by studying sequence variation of four plastid DNA regions: rbcL, rps4 plus rps4‐trnS IGS, trnL intron plus trnL‐F IGS, rbcL‐atpB IGS plus part of atpB. In total, over 4000 nucleotides were sequenced for 39 species. Seven well‐supported clades were found in the analyses of the combined data set. We provide a new classification of Lepisoroideae by integrating phylogenetic results and known variation of morphological characters. The two small genera Neocheiropteris and Tricholepidium are supported as monophyletic, the genus Paragramma is resurrected and the genera Lepisorus, Neolepisorus, Lemmaphyllum and Lepidomicrosorium are re‐circumscribed. We proposed 14 new combinations, among which Caobangia is treated as a synonym of Lemmaphyllum. A key for identifying the recognized genera is presented. © 2010 The Linnean Society of London, Botanical Journal of the Linnean Society, 2010, 162 , 28–38.     

The taxonomical status and diversity of Balkan sironids (Opiliones,Cyphophthalmi) with descriptions of twelve new species

The resurrected genus Cyphophthalmus is defined morphoanatomically and its relationship with the genus Siro, from which it has been separated, is discussed. The genus Tranteeva is synonymized with Cyphophthalmus. Twelve new species are here described: Cyphophthalmus paragamiani , Cyphophthalmus thracicus , Cyphophthalmus gordani , Cyphophthalmus neretvanus , Cyphophthalmus kratochvili , Cyphophthalmus conocephalus , Cyphophthalmus trebinjanus , Cyphophthalmus ognjenovici , Cyphophthalmus martensi , Cyphophthalmus rumijae , Cyphophthalmus zetae , Cyphophthalmus hlavaci , two re‐described: Cyphophthalmus minutus and Cyphophthalmus corfuanus, and for C. corfuanus, Cyphophthalmus bithynicus, and Cyphophthalmus yalovensis a new status is given. Relevant taxonomic characters are reviewed to illustrate the diversity of Balkan sironids. Phyletic relationships amongst species are reviewed and discussed. The results provide the basis for discussion on the relevance of minute morphological differences in the taxonomy of Cyphophthalmi. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 156 , 260–318.     

Morphology‐based phylogenetic binning to assess a taxonomic challenge: a case study in Graphidaceae (Ascomycota) requires a new generic name for the widespread Leptotrema wightii

Molecular phylogenetic analysis presents two challenges when it is transformed into formal classifications: the taxonomic challenge (whether and how to distinguish monophyletic sister clades or how to deal with paraphyletic grades) and the nomenclatural challenge (naming clades, i.e. placing name‐giving types accurately on a tree). One approach to the latter is morphology‐based phylogenetic binning, which places specimens based on phenotypic features on a molecular tree and assigns uncertainty values to alternative placement options. Here, we use the example of the lichenized fungal genus Leptotrema to demonstrate how morphology‐based phylogenetic binning can help to clarify taxonomic and nomenclatural issues when naming phylogenetically defined entities. Leptotrema is known for a common and widespread species, L. wightii, and phylogenetic analyses have been based exclusively on this species, including the recognition of a separate tribe, Leptotremateae. However, the genus name Leptotrema and the tribal name Leptotremateae are based on the name L. zollingeri, which was initially considered to be a synonym of L. wightii, but has recently been shown to represent a distinct species. As L. zollingeri differs considerably in phenotypic features from L. wightii, it can be questioned whether the two are at all related or whether L. zollingeri is actually closer to the genera Myriotrema and Ocellularia in tribe Ocellularieae. The solution to this problem is not trivial, as it affects the correct use of the names Leptotrema and Leptotremateae. Morphology‐based phylogenetic binning indeed demonstrated that L. zollingeri clusters with the Myriotrema album group in tribe Ocellularieae with high support. Hence, in contrast with current use, the name Leptotrema becomes available for the M. album group and Leptotremateae becomes a synonym of Ocellularieae. As a consequence, the new names Sanguinotrema and Sanguinotremateae are introduced to accommodate L. wightii and the tribe including this species and the genus Reimnitzia. Although the studied case is specific to lichen fungi, the approach can be used in a much broader context with any kind of taxon or organism. © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 179 , 436–443.     

The cladistics and biology of the Callajoppa genus-group (Hymenoptera: Ichneumonidae, Ichneumoninae)

A cladistic analysis is presented for the genera of the former ichneumonine tribe Trogini. The tribe Heresiarchini is paraphyletic with respect to the Trogini, and so maintaining Trogini as a separate tribe is unsatisfactory. Within Heresiarchini, the following changes are made: (a) the subtribes Apatetorina and Heresiarchina are referred to as the Apatetor and Heresiarches genus‐groups, (b) the genera of the paraphyletic subtribe Protichneumonina are treated as incerta sedis within Heresiarchini, and (c) the Trogini are referred to as the Callajoppa genus‐group, with the former subtribe Trogina referred to as the Trogus subgroup. Thirty‐five genera are recognized as valid within the Callajoppa genus‐group. Catadelphops, Catadelphus, Cobunus, and Facydes are transferred to this group; Holojoppa is removed and is incertae sedis within Heresiarchini. Three new synonyms are proposed: Araeoscelis and Cryptopyge are junior synonyms of Macrojoppa, and Neamblyjoppa is a junior synonym of Catadelphops. Trogus latipennis Cresson is transferred to Pedinopelte from Macrojoppa, and Trogus mactator Tosquinet and its related species (T. bicolor Radoszkowski, T. heinrichi Uchida, and T. tricephalus Uchida) are transferred to Holcojoppa. Tricyphus is redefined and a neotype is designated for Tricyphus cuspidiger Kriechbaumer, the type‐species of the genus. Thirteen new genera are described (authorship of all is Wahl & Sime): Charmedia (type‐species: Charmedia chavarriai Wahl & Sime, sp. n.) , Daggoo (type‐species: Daggoo philoctetes Wahl & Sime, sp. n.), Dothenia (type‐species: Dothenia hansoni Wahl & Sime, sp. n.), Humbert (type‐species: Humbert humberti Wahl & Sime, sp. n.), Laderrica (type‐species: Laderrica feenyi Wahl & Sime, sp. n.), Mokajoppa (type‐species: Tricyphus respinozai Ward & Gauld), Metallichneumon (type‐species: Metallichneumon neurospastarchus Wahl & Sime, sp. n.), Myocious (type‐species: Myocious orientalis Wahl & Sime, sp. n.) , Quandrus (type‐species: Trogus pepsoides Smith, transferred from Callajoppa), Queequeg (type‐species: Gathetus flavibasalis Uchida, transferred from Neofacydes), Saranaca (type‐species: Trogus elegans Cresson; includes Trogus apicalis Cresson, Tricyphyus ater Hopper, and Tricyphus floridanus Heinrich), Tashtego (type‐species: Tashtego janzeni Wahl & Sime, sp. n.), and Xanthosomnium (type‐species: Xanthosomnium froesei Wahl & Sime, sp. n.). A key to the genera of the Callajoppa genus‐group is provided. The evolution of biological traits within the Callajoppa genus‐group is discussed with reference to the elucidated phylogeny. The groundplan biology is parasitism of Sphingidae, with oviposition into a host pupa/prepupa. There have been two transitions to butterfly parasitism within the Trogus subgroup: one a transition to Papilionidae (followed by a switch to Nymphalidae at Psilomastax) and the other to Nymphalidae (followed by a switch to Papilionidae within Macrojoppa). ©2002 The Linnean Society of London. Zoological Journal of the Linnean Society, 134 , 1–56.