Visualizing information in multivariate data: Applications to petroleum geochemistry : Part 1. Projection methods

General procedures are developed for revealing and comparing the information carried by experimental data obtained for different petroleum fractions. Oblique rotation of principal components is used to obtain projections amenable to geochemical interpretation. A systematic method is given for selecting markers, i.e., compounds related to specific geochemical factors. By projecting samples onto axes defined by markers, their potential for describing a petroleum fraction can be evaluated. The similarity between samples or groups (classes) of samples is revealed by projecting samples onto “geochemicalrdquo; axes and by comparing their residual distances to class models. In class modelling, projections on markers are proposed as a method for eliminating differences induced by alteration processes not related directly to the source of the oils, e.g., maturity.     

Quantum master equation approach to the second hyperpolarizability of nanostar dendritic systems

We investigate the dynamic second hyperpolarizability (gamma) of nanostar dendritic systems using the quantum master equation approach. In the nanostar dendritic systems composed of three-state monomers, the multistep exciton states are obtained by the dipole-dipole interactions, and the directional energy transport, i.e., exciton migration, from the periphery to the core is predicted to occur by the relaxation between exciton states originating in the exciton-phonon coupling. The effects of the intermolcecular interaction and the exciton migration, i.e., exciton relaxation, on the gamma in the third-harmonic generation (THG) are examined in the three-photon off- and on- resonance regions using the two-exciton model. Furthermore, the method for analysis of spatial contributions of excitons to gamma is presented by partitioning the total gamma into the one- and two-exciton contributions. It turns out that the exciton relaxation between exciton states causes significant broadening of the spectra of gamma and their mutual overlap as well as the relative increase of two-exciton contributions in the nanostar dendritic system.     

Numerical simulation of polymer nanocomposites using self-consistent mean-field model

Clay-containing polymeric nanocomposites (PNC) are mixtures of dispersed clay platelets in a polymeric matrix. These materials show enhancement of physical properties, such as modulus, strength, and dimensional stability, as well as a reduction of gas permeability and flammability. The performance is related to the degree of clay dispersion (i.e., intercalation or exfoliation) and the bonding between the clay and the matrix. The main goal of this work has been to map the degree of dispersion as a function of independent variables (viz., magnitude of the interaction parameters, molecular weights, composition, etc.). In this paper, we present the results of the numerical analysis of the equilibrium thermodynamic miscibility using one- and two-dimensional (1D and 2D) models based on the self-consistent mean-field theory. In the limit, the 2D model reproduced the 1D model published results. The adopted 2D model considers the presence of four PNC components: solid clay platelets, low molecular weight intercalant, polymeric matrix, and end-functionalized compatibilizer. The simulations, with realistic values of the binary interaction parameters, were analyzed for potential exfoliation of PNC with a polyolefin as the matrix. The simulation results show that intercalation and exfoliation is expected within limited ranges of the independent variables. The presence of a bare clay surface (e.g., generated by thermal decomposition of intercalant or extraction by molten polymer) has a strong negative effect on the dispersion process. The simulation successfully identified the most influential factors, e.g., optimum ranges of the compatibilizer and the intercalant concentration.     

Polarizable interaction potential for water from coupled cluster calculations. II. Applications to dimer spectra, virial coefficients, and simulations of liquid water

The six-dimensional CC-pol interaction potential for the water dimer was used to predict properties of the dimer and of liquid water, in the latter case after being supplemented by a nonadditive potential. All the results were obtained purely from first principles, i.e., without any fitting to experimental data. Calculations of the vibration-rotation-tunneling levels of (H(2)O)(2) and (D(2)O)(2), a very sensitive test of the potential surface, gave results in good agreement with experimental high-resolution spectra. Also the virial coefficients and properties of liquid water agree well with measured values. The present model performs better than published force fields for water in a simultaneous reproduction of experimental data for dimer spectra, virials, and properties of the liquid.     

Diamagnetic shielding constants of first-row atoms: Studies with a piecewise exponentially decaying electron density function

The piecewise exponentially decaying electron density model of Wang and Parr is used to calculate the diagmagnetic shielding constants of first-row atoms. Numerical results are presented for all first-row atoms and comparisons are made with the results obtained from the one-zone (i.e., single exponential) model. Results obtained from the two-zone (i.e., piecewise exponential) model are in better agreement with the Hartree–Fock results.     

The relations of bond length and force constant with the potential acting on an electron in a molecule

Within a molecule, the potential acting on an electron (PAEM) is defined as the interaction energy of a local electron with the rest of the particles, i.e., all nuclei and remaining electrons. The formalism of the PAEM is first derived, and the calculated PAEMs are then obtained by using the ab initio program based on the MELD program package for a series of diatomic halides, namely, HX, LiX, NaX, and X(2) molecules (X= F, Cl, Br, and I), as well as H(2)O and NH(3), and some organic molecules. By comparing the 3D topological graphs of the PAEMs, we found that there is a saddle point along every chemical bond axis. Further, the good linear correlations of the force constant and bond length with the PAEMs are explored through a definition of D(pb), which is the absolute value (i.e., the negative) of the PAEM at the saddle point along the chemical bond axis. In addition, the difference between the PAEM and molecular electrostatic potential (MEP) is pointed out by analyzing both their definitions and numerical results.     

Accuracy of SUPREX (stability of unpurified proteins from rates of H/D exchange) and MALDI mass spectrometry-derived protein unfolding free energies determined under non-EX2 exchange conditions

Described here is the impact of so-called non-EX2 exchange behavior on the accuracy of protein unfolding free energies (i.e., DeltaG u values) and m values (i.e.,-deltaDeltaG u/delta[denaturant] values) determined by an H/D exchange and mass spectrometry-based technique termed stability of unpurified proteins from rates of H/D exchange (SUPREX). Both experimental and theoretical results on a model protein, ubiquitin, reveal that reasonably accurate thermodynamic parameters for its folding reaction can be determined by SUPREX even when H/D exchange data is collected in a non-EX2 regime. Not surprisingly, the theoretical results reported here on a series of hypothetical protein systems with a wide range of biophysical properties show that the accuracy of SUPREX-derived DeltaG u and m values is compromised for many proteins when analyses are performed at high pH (e.g., pH 9) and for selected proteins with specific biophysical parameters (e.g., slow folding rates) when analyses are performed at lower pH. Of more significance is that the experimental and theoretical results reveal a means by which problems with non-EX2 exchange behavior can be detected in the SUPREX experiment without prior knowledge of the protein's biophysical properties. The results of this work also reveal that such problems with non-EX2 exchange behavior can generally be minimized if appropriate H/D exchange times are employed in the SUPREX experiment to yield SUPREX curve transition midpoints at chemical denaturant concentrations less than 2 M.     

Dye-sensitized solar cell utilizing organic dyads containing triarylene conjugates

A series of organic dipolar compounds containing a donor (D), a bridge (B), and an acceptor (A), forming a D-B-A type of dyads, were synthesized by convenient methods and were utilized successfully on dye-sensitized solar cells. The central bridges were made of three linearly connected arylene groups, i.e., phenylenes or thiophenylenes. The donor groups were aromatic amines, i.e., either a diphenylamine or a naphthylphenylamine group. The acceptor group was a cyanoacrylic acid, which can be anchored onto the surface of TiO₂ in a photovoltaic device. These devices performed remarkably well, with a typical quantum efficiency of 5-7%, and optimal incident photon to current conversion efficiency (IPCE) exceeding 80%. The devices made with a naphthylphenylamine donor group performed slightly better than those made with a diphenylamine donor group. Compounds containing a phenylene-thiophenylene-phenylene bridge group performed better than those with other kinds of triarylene linkages. Their photochemical behaviors were analyzed by using time-dependent density functional theory (TDDFT) models with the B3LYP functional.     

锌在玻璃碳上的电化学成核机理

线性扫描伏安法和电位阶跃法被用来研究氯化钾镀锌溶液中锌在玻璃碳上电结晶的初期阶段。发现锌在该基体上的沉积没有经历UPD过程。在本实验条件下, 成熟晶核的生长受溶液中锌离子的扩散所控制, 而晶核形成的机理依有无添加剂存在而异。通过分析恒电位暂态, 求出锌离子的扩散系数D, 以及不同过电位η下的成核速度常数A和晶核数密度N_0。A和η的关系表明“原子模型”比经典的成核模型更适合于本研究体系。N_0与η的经验关系式由曲线拟合而得。本文着重讨论了过电位和添加剂对成核作用的影响。     

Diffusion coefficients in swelling polypyrrole: ESCR and Cottrell models

Reliable diffusion coefficients, D, for the diffusion of perchlorate anions into polypyrrole films during polymeric oxidation were obtained from chronoamperometric results. Two different models were used to calculate D: the Cottrell equation and the electrochemically stimulated conformational relaxation (ESCR) model. As expected, the initial Cottrell hypothesis was far from swelling/shrinking polymeric electrodes and the obtained D range was from 10(-10) to 10(-6) cm(2) s(-1). The ESCR model, based on the internal diffusion that takes place from regions where the steady state of oxidation has already been reached to regions where the oxidation is only just beginning, provided values of D ranging from 0.4 x 10(-9) to 2.2 x 10(-9) cm(2) s(-1), which is close to the values expected for a gel. When a constant amplitude is kept for the potential step, D increases with increasing initial anodic potentials, i.e., from increasingly swollen films. When it is stepped to the same oxidation potential, D decreases when starting from more cathodic potentials, i.e., from a more compact structure. These changes in D can be attributed to (i) swelling processes during oxidation, giving a gel-like structure; (ii) compacting processes at increasing cathodic potentials; (iii) the increasing thickness of the film during oxidation; and (iv) a decrease in film viscosity during the swelling process.     

Ground and excited-state electronic interactions in poly(propylene amine) dendrimers functionalized with naphthyl units: effect of protonation and metal complexation.

We report the absorption spectra and the photophysical properties (fluorescence spectrum, quantum yield, and lifetime) of four dendrimers of the poly(propylene amine) family (POPAMs) functionalized at the periphery with naphthylsulfonamide (hereafter called naphthyl) units. Each dendrimer Gn, where n = 1 to 4 is the generation number, comprises 2n + 1 (i.e., 32 for G4) naphthyl functions in the periphery and 2n + 1--2 (i.e., 30 for G4) tertiary amine units in the branches. All the experiments have been carried out in acetonitrile solutions. Comparison with two reference compounds (N-methyl-naphthalene-2-sulfonamide, A, and N-(3-dimethylamino-propyl)-2-naphthalene-1-sulfonamide, B) has shown that the absorption spectra of the dendrimers are significantly different from those expected from the component units. Furthermore, the intense fluorescence band of the naphthyl unit (lambda max = 343 nm; phi = 0.15, tau = 8.5 ns) is strongly quenched in the dendrimers. The quenching effect increases with increasing generation and is accompanied by the appearance of a weak and broad emission tail at lower energy. Protonation of the amine units of the dendrimers by addition of CF3SO3H (triflic) acid causes a strong increase in the intensity of the naphthyl luminescence and a change in the form of the emission tail. The shapes of the titration curves depend on dendrimer generation, but in any case, the effect of the acid can be fully reversed by successive addition of a base (tributylamine). The results obtained show that in the dendrimers there are interactions (both in the ground and excited states) between naphthyl units as well as between naphthyl units and amine units of the branches; this gives rise to dimer/excimer and charge-transfer/exciplex excited states. Titration with Zn(CF3SO3)2 has the same effect as acid titration, as far as the final emission spectrum is concerned, but a much higher concentration of Zn(CF3SO3)2 has to be used and the shapes of the titration plots are very different. Titration with Co(NO3)2.6H2O causes a much smaller increase in the intensity of the naphthyl fluorescence compared with Zn(CF3SO3)2. The results obtained have shown that protonation and metal coordination can reveal the presence of ground and excited state electronic interactions in functionalized poly(propylene amine) dendrimers, and that the presence of photo-active units in the dendrimers can be useful to reveal some peculiar aspects of the protonation and metal coordination processes.     

Polymer/graphite nanocomposites: Effect of reducing the functional groups of graphite oxide on water barrier properties

Water barrier properties (i.e., water resistance) of poly(styrene-co-butyl acrylate)/graphite oxide (poly(St-co-BA)/GO) nanocomposites were studied using hydrophobicity and permeability analysis. Poly(St-co-BA)/GO nanocomposite latices were obtained using the miniemulsion polymerization technique. The hydrophobicity of the synthesized nanocomposites was studied using contact angle measurements, while water permeability was obtained by measuring the moisture vapor transmission rate (MVTR). The nanocomposites were treated with hydrazine hydrate in order to reduce the functional groups on graphite oxide (GO). The focus was on determining the effect of reducing the functional groups of GO on the water barrier properties of its polymer nanocomposites. In general, the nanolayered graphene platelets in GO and RGO resulted in lower water permeation in the final films compared to pure polymer. However, results showed that nanocomposites containing the reduced-GO (RGO) had better water resistance and barrier properties compared to those made with unreduced GO (i.e., as-prepared GO). The nanocomposites containing RGO had higher hydrophobicity and lower water uptake and MVTR compared to those made with as-prepared GO, resulting in better barrier performance. This was attributed to the high hydrophobic nature of the RGO, which exhibited lower water solubility that resulted in films with lower MVTR values compared to those made with as-prepared GO.     

Synthesis of highly ordered mesoporous alumina thin films and their framework crystallization to γ-alumina phase

Here we report the preparation of highly ordered mesoporous alumina films existing both as P6(3)/mmc and Fm-3m mesostructures by using triblock copolymer Pluronic P123 as the structure-directing agent. 2D grazing-incidence small-angle X-ray scattering (GI-SAXS) completely proves the existence of two different mesopore structures (i.e., [001]-oriented P6(3)/mmc and [111]-oriented Fm-3m symmetries). After calcination at 1000 °C, the amorphous alumina framework is successfully converted to γ-alumina crystals. During the crystallization process, large uniaxial shrinkage occurs along the direction perpendicular to the substrate with the retention of horizontal mesoscale periodicity, thereby resulting in formation of partially vertical mesoporosity in the film. Through detailed electron microscopic study, we discuss the formation mechanism for the vertical mesoporosity upon calcination. The obtained mesoporous γ-alumina film shows high thermal stability up to 1000 °C, which is highly useful in wide research areas such as catalyst supports and separators.     

Shear viscosity of molten alkali halides from equilibrium and nonequilibrium molecular-dynamics simulations

The shear viscosity of molten NaCl and KCl was calculated through equilibrium (EMD) and nonequilibrium molecular-dynamics (NEMD) simulations in the canonical (N,V,T) ensemble. Two rigid-ion potentials were investigated, namely, the Born-Mayer-Huggins-Tosi-Fumi potential and the Michielsen-Woerlee-Graaf-Ketelaar potential with the parameters proposed by Ladd. The NEMD simulations were performed using the SLLOD equations of motion [D. J. Evans and G. P. Morriss, Phys. Rev. A 30, 1528 (1984)] with a Gaussian isokinetic thermostat and the results are compared with those obtained from Green-Kubo EMD (N,V,T) simulations and experimental shear viscosity data. The NEMD zero strain rate shear viscosity, eta(0), was obtained by fitting a simplified Carreau-type equation and by application of mode-coupling theory, i.e., a eta-gamma(1/2) linear relationship. The values obtained from the first method are found to be significantly lower than those predicted by the second. The agreement between the EMD and NEMD results with experimental data is satisfactory for the two potentials investigated. The ion-ion radial distribution functions obtained with the two rigid-ion potentials for both molten salts are discussed in terms of the differences between the two models.     

Steric communication of chiral information observed in dendronized polyacetylenes

Structural and retrostructural analysis of helical dendronized polyacetylenes (i.e., self-organizable polyacetylenes containing first generation dendrons or minidendrons as side groups) synthesized by the polymerization of minidendritic acetylenes with [Rh(nbd)Cl]2 (nbd = 2,5-norbornadiene) reveals an approximately 10% change in the average column stratum thickness (l) of the cylindrical macromolecules with a chiral periphery, through which a strong preference for a single-handed screw-sense is communicated. The cylindrical macromolecules reversibly interconvert between a three-dimensional (3D) centered rectangular lattice (Phi r-c,k) exhibiting long-range intracolumnar helical order at lower temperatures and a two-dimensional (2D) hexagonal columnar lattice (Phi h) with short-range helical order at higher temperatures. A polymer containing chiral, nonracemic peripheral alkyl tails is found to have a larger l as compared to the achiral polymers. In methyl cyclohexane solution, the same polymer exhibits an intense signal in circular dichroism (CD) spectra, whose intensity decreases upon heating. The observed change in l indicates that the chiral tails alter the polymer conformation from that of the corresponding polymer with achiral side chains. This change in conformation results in a relatively large free energy difference (DeltaGh) favoring one helix-sense over the other (per monomer residue). The capacity to distort the polymer conformation and corresponding free energy is related to the population of branches in the chiral tails and their distance from the polymer backbone by comparison to recently reported first and second generation dendronized polyphenylacetylenes.     

Quasi-classical trajectory-gaussian binning study of the OH + D2 → HOD(v1',v2',v3') + D angle-velocity and vibrational distributions at a collision energy of 0.28 eV

The angle-velocity and product vibrational state distributions for the OH + D(2) reaction at a collision energy of 0.28 eV have been calculated using the quasi-classical trajectory-gaussian binning (QCT-GB) method and the Wu-Schatz-Lendvay-Fang-Harding (WSLFH) analytical potential energy surface. Comparison with high resolution molecular beam experiments shows that, differing from what happens when using the standard QCT method (i.e., histogram binning), very good results are obtained for both distributions. Hence, the strong differences previously observed between QCT and experimental results mainly come from an inadequate pseudoquantization of HOD rather than from other quantum effects. This is probably the first time that such a high level of agreement between theory and high resolution experimental data has been found in polyatomic reaction dynamics.     

Near-field Raman imaging and electromagnetic field confinement in the self-assembled monolayer array of gold nanoparticles

Spatial distribution of surface enhanced Raman activity is visualized for two-dimensional (2D) nearly close-packed and well-ordered monolayer array of gold nanoparticles by using scanning near-field optical microscope. The 2D arrays exhibit highly nonuniform enhancement in Raman scattering, i.e., the regions along the edge of the 2D array are preferentially enhanced. We demonstrate that the spatial distribution of the localized electric field is also nonuniform and agrees well with that of the Raman enhancement.     

Increasing selectivity in comprehensive three-dimensional gas chromatography via an ionic liquid stationary phase column in one dimension

Recent advances in improving the selectivity and performance for a comprehensive, three-dimensional (3D) gas chromatograph (GC³) instrument are described. With GC³, two six-port diaphragm valves are utilized as the interfaces between three, in-series capillary columns housed in a standard GC instrument fitted with a high data acquisition rate flame ionization detector (FID). Modulation periods for sampling from one column to the next are set so that sufficient slices (i.e., modulations) are acquired by the subsequent dimension resulting in comprehensive data. We present GC³ instrumentation with significantly higher 3D peak capacity than previously reported. An average peak capacity production (i.e., per time) of 180 resolved peaks per minute was experimentally achieved for three representative analytes in a 3D diesel sample separation. This peak capacity production is about 4 times higher than our previous report. We also demonstrate the significant benefit of the added chemical selectivity of the three column GC³ instrument relative to a two column GC × GC instrument, in which one of the three columns is a triflate ionic liquid stationary phase column with a high selectivity for phosphonated compounds (i.e., di-methyl-methyl phosphonate, di-ethyl-methyl phosphonate and di-isopropyl-methyl phosphonate). Using all three separation dimensions, the 2D separation fingerprint of a diesel sample is simultaneously obtained along with selective information regarding the phosphonated compounds in the diesel samples in the additional dimension.     

Capillary electrophoresis speciation analysis of various arsenical compounds

Separation of seven organic and inorganic arsenical species, i.e., inorganic arsenite (As III) and arsenate (As V), monomethylarsonic acid (MMA), dimethylarsinic acid (DMA), arsenobetaine (AsBet), arsenocholine (AsCh) and p-arsanilic acid (pAs) was carried out by capillary electrophoresis (CE) equipped with one of two different optical path cells, i.e., either the standard detection interface (SDI) or the high sensitive detection cell (HSDC). Separation, identification and quantification of the As species were performed by means of a capillary silica column with an alkaline borate buffer at pH 9.3 and direct UV detection at 192 nm. This methodological approach was tested with the abovementioned types of cells, and the results of the two modes were compared. In both cases, good separation was obtained, and also, repeatability in terms of migration times and peak areas was rather satisfactory. With regard to sensitivity, the HSDC allowed peak areas to be obtained, which were ca. 50 times greater than those afforded by the former cell. This also led to a substantial improvement in the limits of detection (LoDs); by a factor of 9 in the case of AsCh.