Spectroscopic probing of organic molecules encapsulated in functionalized carbon nanotubes in solution

Pyrene was introduced into cavities in functionalized single-walled and multiple-walled carbon nanotubes to be used as a molecular probe in the study of encapsulation. The solubility of these materials in common organic solvents allowed solution-phase absorption and emission spectroscopic measurements. The results, which are consistent with the formation of pyrene excimer, are explained in terms of high local pyrene concentrations and perhaps pyrene microcrystals inside the carbon nanotube cavities. The fluorescence decay results show that there is significant quenching of pyrene excited states by the hosting carbon nanotubes.     

Spectroscopic investigation confirms retaining the pristine nature of single-walled carbon nanotubes on dissolution in aniline

Carbon nanotubes in all forms are very much insoluble in both organic and inorganic solvents due to its high agglomeration and entangled morphology. General methods for dissolution of single-walled carbon nanotubes (SWNTs) are mostly associated with complexation or polymerization or addition of macromolecules which change the physical or chemical properties of SWNTs and the pristine nature of SWNTs is lost. Dissolution of SWNTs in a solvent like aniline is practiced here which is a very simple reaction method. Here aniline is capable to form a SWNT-aniline charge transfer complex without attachment of macromolecules or polymer which is also soluble in other organic solvents. Solvation of SWNTs by this method is also capable of maintaining the similarity between the structure of SWNTs before and after the dissolution, which means that the pristine nature of SWNTs is preserved. Formation of charge transfer complex in this reaction has been proven by UV-Vis/NIR absorption and photoluminescence spectroscopy. Raman spectroscopy and electron microscopy (FESEM and TEM) are the evidences for protection of the pristine nature of SWNTs even after high-temperature complexation reaction with aniline and also after solubilization in organic solvents.     

Direct observation of the strong interaction between carbon nanotubes and quartz substrate

We present a chemical vapor deposition (CVD) method for the growth of uniform single-walled carbon nanotube (SWNT) arrays on a stable temperature (ST)-cut single crystal quartz substrate using a mixture of methanol and ethanol as carbon source. It is found that introducing methanol during the growth can improve the density and the length of the well-aligned SWNTs in the arrays as well as increase the SWNT/quartz interaction. Obvious “up-shifts” of G-band frequencies in the Raman spectra have been found for the aligned SWNTs. A welldesigned control experiment shows that the G-band “up-shifts” originate from the strong interaction between SWNTs and the quartz substrate. It is believed that exploring this interaction will help to elucidate the growth mechanism; ultimately, this will help realize the promise of controlling the chirality of SWNTs.     

Characterization of an interaction between functionalized carbon nanotubes and an enzyme

Carbon nanotubes (CNTs) did not exhibit strong interactions with Biliverdin IX beta reductase enzyme (BVRB) in water. With the use of noncovalent functionalization by the surfactant Triton X-100, the surfaces of the CNTs were changed from hydrophobic to hydrophilic. The hydrophilic surface of the CNT-Triton conjugate interacts with the hydrophilic surface of BVRB, thus creating a water-soluble complex. Results from ultracentrifugation through a sucrose gradient and gel electrophoresis show the presence of the enzyme. Raman spectroscopy confirmed that the enzyme indeed interacts with CNT-Triton conjugates.     

Mechanical interaction between single-walled carbon nanotubes during the formation of a bundle

This paper investigates the intertubular van der Waals interactions that produce the initial cross sectional distortion of single-walled carbon nanotubes during a bundle formation. By combining the analysis of molecular dynamics with the continuum mechanics, the distributions of the van der Waals forces were determined. The dependence of the load parameters, deformation variables and the lattice constant on the nanotube radius, was also investigated. It was found that the van der Waals forces are attractive and vary circumferentially in a harmonic manner. For the considered zigzag nanotubes of radius 7–14 Å, the intensity of the van der Waals forces is radius-dependent and can be as large as 6–11 GPa in the channels of the bundle and 1–5 GPa at the closest points between the single-walled nanotubes.     

Channelling of dipolar molecules through carbon nanotubes

We study the dynamic polarization of carbon nanotubes caused by the propagation of fast electric dipoles under channelling conditions. We specifically analyse the position and orientation dependences of the dipole self-energy, stopping force, and the torque about the dipole centre. It is found that a dipole is strongly attracted to the nanotube wall and shows a tendency to orient itself perpendicular to the direction of motion. The stopping force shows more complex behaviour, but is generally found to be larger close to the nanotube wall and when oriented in the perpendicular direction at higher speeds.     

Tuning the conductance of carbon nanotubes with encapsulated molecules

It was recently shown that a molecule encapsulated inside a carbon nanotube can be used to devise a novel type of non-volatile memory element. At the heart of the mechanism for storing and reading information is the new concept of a molecular gate where the molecule acts as a passive gate that hinders the flow of electrons for a given position relative to the nanotube host. By systematically exploring the effects of encapsulation of an acceptor molecule in a series of carbon nanotubes, we show that the reliability of the memory mechanism is very sensitive to the interaction between the nanotube host and the molecule guest.     

Spectroscopic study of nitrogen doping of multi-walled carbon nanotubes

Combined spatially resolved electron-energy loss spectroscopy (EELS) and high resolution near-edge X-ray absorption fine structure (NEXAFS) spectroscopy have been used to investigate the nitrogen doping of multi-walled carbon nanotubes (N-MWNT). EELS indicates that most of the tubes are nitrogen-doped. NEXAFS spectroscopy reveals pyridine-like and nitrile N structures. High resolution NEXAFS experiments show that the main nitrogen concentration originates from a high amount of molecular N2 encapsulated into only a small quantity of tubes.     

Experimental evidence on molecular interaction in desorption and adsorption of CO molecules on metal surfaces

Adsorption and desorption of CO on Ni(100) and Pt(111) surfaces are presented. At the thermodynamic equilibrium, the site occupation between the terminal and the bridged sites are described with the free energy of the system, including the vibrational entropy. Adsorption of CO onto a cold surface as 20 K has also been studied by infrared reflection absorption spectroscopy (IRAS). The occupation ratio of bridged CO to terminal CO species on Ni(100) at 20 K ranges from ～ 2·8 to 0·7 at the total coverage from 0·003 to 0·15 ML. Such strong coverage dependence of the occupation ratio even at small coverages suggests that the interaction between CO molecules operates at relatively long range (> 10 Å). The isotope experiments suggest that there is substantial interaction between preadsorbed (accommodated) CO species and incoming (mobile) CO species. Desorption process is also affected by the interaction between the adsorbed CO and the incoming species. The effect of temporal bimolecular CO interaction on the desorption kinetics is also discussed.     

Buckling of defective single-walled and double-walled carbon nanotubes under axial compression by molecular dynamics simulation

Buckling of defective single-walled and double-walled carbon nanotubes (SWCNTs and DWCNTs, respectively) due to axial compressive loads has been studied by molecular dynamics simulations, and results compared with those of the perfect structures. It is found that single vacancy defect greatly weakens the carrying capacity of SWCNTs and DWCNTs, though it does slight harm to the effective elastic modulus of the tubes. The influence of defects on the buckling properties of nanotubes is related to the density of the defects, and the relative position of defects also plays an important role in buckling of DWCNTs. The van der Waals force among atoms in the inner and the outer tubes of short defective DWCNTs makes the critical buckling strain of DWCNTs greater than that of the inner tube.     

Spectroscopic and electrochemical studies on the molecular interaction between copper sulphide nanoparticles and bovine serum albumin

The interaction of covellite hexagonal phase of copper sulphide nanoparticles (CuS NPs) with bovine serum albumin (BSA) was examined systematically by using fluorescence, UV–visible, circular dichroism (CD), Fourier transform infrared (FTIR), dynamic light scattering (DLS) and molecular modelling techniques. Electrochemical method was studied to further confirm the interaction of BSA with CuS NPs. The results of fluorescence studies demonstrated that fluorescence of BSA was quenched by CuS NPs via a static quenching mechanism. The negative values of thermodynamic parameters (ΔG, ΔH and ΔS) indicated that the binding process is spontaneous, exothermic and van der Waals force or hydrogen bonding plays major roles in the interaction of CuS NPs with BSA. The interaction of CuS NPs with Trp residue was established by synchronous studies, and competitive binding studies revealed that Trp-212 of subdomain IIA was involved in the interaction with these nanoparticles. Further, the efficiency of energy transferred and the distance between fluorophore (BSA) and acceptor (CuS NPs) were calculated using Forster’s resonance energy transfer theory. The results of UV–visible, CD, FTIR and DLS revealed that the CuS NPs interact with BSA by inducing the conformational changes in secondary structure and reducing the α-helix content of BSA. Molecular modelling studies suggested that CuS NPs bind to site I of sub domain IIA of BSA. The results of spectroscopic and molecular docking studies were complimented by the electrochemical techniques.     

DNA nucleoside interaction and identification with carbon nanotubes

We investigate the interaction of individual DNA nucleosides with a carbon nanotube (CNT) in vacuum and in the presence of external gate voltage. We propose a scheme to discriminate between nucleosides on CNTs based on measurement of electronic features through a local probe such as scanning tunneling spectroscopy. We demonstrate through quantum mechanical calculations that these measurements can achieve 100% efficiency in identifying DNA bases. Our results support the practicality of ultrafast DNA sequencing using electrical measurements.     

Molecular dynamics simulation of polarizable carbon nanotubes

This paper is aimed to develop a modified force field for molecular dynamics (MD) simulations of polarizable carbon nanotubes (CNTs). The effects of electrical polarization and the associated electronic degrees of freedom are represented by a network of negative charged shell particles which move relative to the surrounding positively charged carbon atoms in response to an applied electric field. In this setting, the negative and positive charges are exactly balanced so that the total system remains electrically neutral, and the motion of the shell particles relative to their equilibrium positions leads to polarization within the nanotube. Potential applications of the proposed model include simulations of controlled translocation of ions, water and polymers through solid-state CNT membranes.     

Evaluation of the chemical interaction between carbon nanotubes functionalized with TGDDM tetrafunctional resin and hardener DDS

In this work, the chemical interaction between carbon nanotubes (MWCNT) functionalized with acyl chloride (SOCl₂) and polymer chain tetrafuncional N,N,N′,N′-tetraglycidyl-4,4′-diaminodiphenylmethane (TGDDM) and hardener 4,4′diaminodiphenyl sulfone (DDS) has been monitored by Fourier transform infrared spectroscopy (FTIR) with a attenuated total reflectance (ATR) coupled. MWCNT were obtained from the pyrolysis of a mixture of camphor and ferrocene into a oven. The functionalization process was done by oxidative treatment in order to incorporate carboxylic group over the walls of MWCNT, before to be used SOCl₂. The functionalized carbon nanotubes were evaluated by X-ray photoelectron spectroscopy (XPS), Raman and transmission electron microscopy (TEM). Nanostructured composites were processed by using epoxy resin with MWCNT in varying percentages. In this work it was observed that different percentages of functionalized nanotubes modify the interaction between the composite matrix and curing agent, where can be observed that in specimens with content less than 1 wt% MWCNT the chemical bond occurs preferentially from the opening of the SO double bond of the hardener and when is used MWCNT content higher than 1 wt% there is little chemical interaction with the SO bond of the hardener and most MWCNT binds to amine.     

Investigating the effect of chirality on structural parameters of chiral single-walled carbon nanotubes by molecular dynamics simulation

The structural parameters of thin single-walled carbon nanotubes (SWCNTs) vs. chiral angle were investigated using molecular dynamics (MD) simulation. A comparison was made between nanotube radius obtained from MD simulation and that obtained from ideal rolling graphene model. Brenner empirical bond order potential was used to describe the interaction between carbon atoms. SWCNTs (n, m) with n + m = 6, 8, 10 and 12 were considered. It was observed that chiral nanotubes have three unequal bond lengths and three unequal bond angles, while for armchair and zigzag SWCNTs there are two unequal parameters.     

Noncovalent functionalization of multi-walled carbon nanotubes with amphiphilic polymers containing pyrene pendants

A novel noncovalent approach was developed for the functionalization of multiwalled carbon nanotubes (MWNTs) using an amphiphilic copolymer of PVP-co-PAH containing pyrene pendants. A homogeneous polymer layer was formed on the surface of MWNTs, and the wrapped copolymer layer with a thickness of about 17.7 nm was found. The noncovalent modified MWNTs were dispersed very well in solvent of dimethylformamide (DMF), water and chloroform (CHCl₃), and the high stability of dispersed suspensions could be maintained for more than 2 months without observed MWNT precipitation. In addition, the dispersing behavior of the noncovalent functionalized MWNTs by PVP-co-PAH in a solvent mixture of water/CHCl₃ was also investigated, and it was found that a carbon nanotube layer was formed at the water/CHCl₃ interface.     

Self-assembly of single-walled carbon nanotubes into multiwalled carbon nanotubes in water: molecular dynamics simulations

We report discoveries from a series of molecular dynamics simulations that single-walled carbon nanotubes, with different diameters, lengths, and chiralities, can coaxially self-assemble into multiwalled carbon nanotubes in water via spontaneous insertion of smaller tubes into larger ones. The assembly process is tube-size-dependent, and the driving force is primarily the intertube van der Waals interactions. The simulations also suggest that a multiwalled carbon nanotube may be separated into single-walled carbon nanotubes under appropriate solvent conditions. This study suggests possible bottom-up self-assembly routes for the fabrication of novel nanodevices and systems.     

Label-free detection of DNA hybridization using pyrene-functionalized single-walled carbon nanotubes: effect of chemical structures of pyrene molecules on DNA sensing performance

We investigate the effect of functional groups of pyrene molecules on the electrical sensing performance of single-walled carbon nanotubes (SWNTs) based DNA biosensor, in which pyrenes with three different functional groups of carboxylic acid (Py-COOH), aldehyde (Py-CHO) and amine (Py-NH2) are used as linker molecules to immobilize DNA on the SWNT films. UV/Visible absorption spectra results show that all of the pyrene molecules are successfully immobilized on the SWNT surface via pi-pi stacking interaction. Based on fluorescence analysis, we show that the amide bonding of amine terminated DNA via pyrene containing carboxylic groups is the most efficient to immobilize DNA on the nanotube film. The electrical detection results show that the conductance of Py-COOH modified SWNT film is increased upon DNA immobilization, followed by further increase after hybridization of target DNAs. It indicates that the pyrene molecules with carboxylic acid groups play an important role to achieve highly efficient label-free detection by nondestructive and specific immobilization of DNAs.     

Vibration and orientation of diatomic molecules flowing through small carbon nanotubes

With their unique long cylindrical shape, carbon nanotubes may one-day form nozzles for nano-scale printing or flow into a chamber. Since the scale of the flowing molecules is similar to the diameter of the nanotubes, molecular vibration, orientation and density become influenced by the confinement during flow. We have studied the flow of diatomic molecules through carbon nanotube nozzles using non-equilibrium molecular dynamics simulations, in an effort to gain a greater understanding about the fundamental properties of such molecules in such a setting. The frequency of vibration of the molecules is shown to be dependent on the density inside the nanotubes and follow the same relation as an experimental micro-scale density-frequency study suggests, although only for nanotubes above a certain diameter. Meanwhile no relation is found between the frequency of vibration and the flow rate. The effect of nanotube diameter on the orientation of the molecules is also examined in detail, showing the transition between axial and radial orientation, with "pull" and "push" effects determining the orientation.