Hydrogen bond assisted synthesis of azacyclophanes from l-tyrosine derivatives

Spectroscopic and computational studies reveal that a dimer of two units of l-tyrosine derivatives, joined by intermolecular hydrogen bonds, acts as a template in the synthesis of azacyclophanes from l-tyrosine derivatives and formaldehyde via double Mannich type reaction. When the reaction is performed with l-tyrosine, the absence of this template leads to linear products. A new azacyclophane (benzoxazinephane) was synthesized by condensation of l-tyrosine isopropyl ester and formaldehyde.     

Control of the photoreactivity of diarylethene derivatives by quaternarization of the pyridylethynyl group

Photochromic behavior of diarylethene derivatives with (4-pyridyl)ethynyl group directly attached to the 6-pi hexatriene moieties of the diarylethenes was investigated. Upon quaternarization of the pyridine moieties, the photoreactivity was strongly suppressed. On the other hand, diarylethene derivatives with nonconjugated (4-pyridyl)ethyl group exhibited the photochromic reactivity, regardless of whether pyridyl rings are quaternarized or not. In the case of the (4-pyridyl)ethynyl-substituted compounds, the photochromic reactivity was suppressed by the addition of trifluoroacetic acid and was restored by diethylamine.     

Hydrogen bond and halogen bond inside the carbon nanotube

The hydrogen bond and halogen bond inside the open-ended single-walled carbon nanotubes have been investigated theoretically employing the newly developed density functional M06 with the suitable basis set and the natural bond orbital analysis. Comparing with the hydrogen or halogen bond in the gas phase, we find that the strength of the hydrogen or halogen bond inside the carbon nanotube will become weaker if there is a larger intramolecular electron-density transfer from the electron-rich region of the hydrogen or halogen atom donor to the antibonding orbital of the X-H or X-Hal bond involved in the formation of the hydrogen or halogen bond and will become stronger if there is a larger intermolecular electron-density transfer from the electron-rich region of the hydrogen or halogen atom acceptor to the antibonding orbital of the X-H or X-Hal bond. According to the analysis of the molecular electrostatic potential of the carbon nanotube, the driving force for the electron-density transfer is found to be the negative electric field formed in the carbon nanotube inner phase. Our results also show that the X-H bond involved in the formation of the hydrogen bond and the X-Hal bond involved in the formation of the halogen bond are all elongated when encapsulating the hydrogen bond and halogen bond within the carbon nanotube, so the carbon nanotube confinement may change the blue-shifting hydrogen bond and the blue-shifting halogen bond into the red-shifting hydrogen bond and the red-shifting halogen bond. The possibility to replace the all electron nanotube-confined calculation by the simple polarizable continuum model is also evaluated.     

Cytisine derivatives containing a triple bond

N-(-Acyloxy-2-butynyl)cytisines are obtained by the condensation of cytisine, via the Mannich reaction, with propargyl esters of monobasic carboxylic acids.Translated from Khimiya Geterotsiklicheskikh Soedinenii, No. 5, pp. 655–656, May, 1971.     

Hydrogen bond lifetime in supercritical water

Molecular dynamics simulations of water were performed in a wide range of supercritical temperatures and pressures with using TIP4P-HB model potential. The effect of state parameters on microdynamics of hydrogen bonds was studied. Isobaric (P = 30, 50, 80, 100 MPa) and isothermal (T = 673 K) dependencies of average hydrogen bond lifetime were calculated.     

Hydrogen bond lifetime dynamics at the interface of a surfactant monolayer

The dynamics of water near the polar headgroups of surfactants in a monolayer adsorbed at the air/water interface is likely to play a decisive role in determining the physical behavior of such organized assemblies. We have carried out an atomistic molecular dynamics (MD) simulation of a monolayer of the anionic surfactant sodium bis(2-ethyl-1-hexyl) sulfosuccinate (aerosol-OT or AOT) adsorbed at the air/water interface. The simulation is performed at room temperature with a surface coverage of that at the critical micelle concentration (78 Angstrom(2)/molecule). Detailed analyses of the lifetime dynamics of surfactant-water (SW) and water-water (WW) hydrogen bonds at the interface have been carried out. The nonexponential hydrogen bond lifetime correlation functions have been analyzed by using the formalism of Luzar and Chandler, which allowed identification of the bound states at the interface and quantification of the dynamic equilibrium between bound and quasi-free water molecules, in terms of time-dependent relaxation rates. It is observed that the water molecules present in the first hydration layer form strong hydrogen bonds with the surfactant headgroups and hence have longer lifetimes. Importantly, it is found that the overall relaxation of the SW hydrogen bonds is faster for those water molecules which form two hydrogen bonds with the surfactant headgroups than those forming one such hydrogen bond. Equally interestingly, it is further noticed that water molecules beyond the first hydration layer form weaker hydrogen bonds than pure bulk water.     

Hydrogen bonds in solid hydroxides, a bond valence approach

The bond valences s_OH due to the O-H bonds of OH⁻ ions in solids have been calculated indirectly from intermolecular H?O distances, viz. those within the Wigner Seitz cell around the respective hydrogen atom, by using the equation s_OH=1−∑s_H?O. The bond valences thus derived are an excellent measure of the strength of O-H bonds [J. Mol. Struct. 351 (1995) 205]. This is shown by their almost linear correlation with the wave numbers of the stretching modes of matrix isolated OD⁻ ions observed with IR or Raman experiments. In the case of very weak or lacking hydrogen bonds, this correlation fails because then other interionic bonding phenomena than hydrogen bonds as metal-oxygen interactions and hydrogen-hydrogen repulsion etc. gain in importance or dominate finally and, hence, partly or fully determine the wave numbers of the OD stretching modes, which, however, still remain a measure of the respective bond strengths. The relation of the distances r_OH, the bond valences s_OH, and the stretching modes ν_OD of both free, gaseous OH⁻ ions and H₂O molecules and those embedded in crystalline matrices is discussed.     

Hydrogen: a good partner for rhodium‐catalyzed hydrosilylation

The influence of hydrogen pressure on the hydrosilylation of ketones catalyzed by [((S)‐SYNPHOS)Rh(nbd)]OTf has been studied. We have notably demonstrated that hydrogen significantly affected the outcome of the reaction while not being consumed as stoichiometric reducing agent. In THF, diethyl ether or toluene, the hydrogen pressure exceedingly accelerated the hydrosilylation reaction and preserved or even improved the enantioselectivity of the process. In CH₂Cl₂, the rhodium catalyst also showed generally higher catalytic activity under hydrogen pressure. Most serendipitously, several ketones were found to give products of absolute opposite configuration upon performing the hydrosilylation under argon atmosphere or under hydrogen pressure. Copyright © 2014 John Wiley & Sons, Ltd.     

Hydrogen bond assisted activation of a dinitrile towards nucleophilic attack

The possibility of tunable regioselective activation of a dinitrile towards nucleophilic attack was demonstrated. For that, a sulfo-arylhydrazone unit was introduced into malononitrile and the thus formed intramolecular hydrogen bond systems assisted specific nucleophilic attacks to the cyano moieties leading to a variety of amidines, carboxamides and iminoesters depending on the nucleophiles and conditions used.     

Hydrogen bond cooperativity in dimers of hydroxamic acids

Molecular orbital calculations are performed on various dimeric forms of four tautomers each of thioformohydroxamic acid and formohydroxamic acid. The analysis of stabilization energies associated with the dimerization and their correlation to proton affinities and deprotonation enthalpies of different potential sites present in the molecules indicate that the highest stabilization results when the most basic, site of the molecule acts as hydrogen bond acceptor but combination of the most acidic and the most basic site does not result in the largest stabilization when dimerization occurs. The presence of hydrogen bond cooperativity is indicated and the reasons for the observed cooperativity are explored in this study. © 2010 Wiley Periodicals, Inc. Int J Quantum Chem, 2011     

Relationship between the energy of donor–acceptor bond and the reorganization energy in molecular complexes

Donor–acceptor complexes of silicon halides with ammonia, pyridine, and 2,2′bipyridine SiX₄ · nD (X = F, Cl, Br) have been studied at the B3LYP/pVDZ level of theory. Energies of the donor–acceptor bond have been estimated taking into account the reorganization energy of the donor and acceptor fragments and basis set superposition error correction. Despite of the very low (or even negative) dissociation energy of SiX₄ · nD into free fragments, the Si–N bonding in all complexes is rather strong (75–220 kJ mol^?1). It is the reorganization energy of the acceptor SiX₄ (75–280 kJ mol^?1) that governs the dissociation energy of the complex. Thus, in contrast to the complexes of group 13 halides, the reorganization effects are crucial for the complexes of group 14 halides, and their neglecting leads to erroneous conclusions about the strength of the donor–acceptor bond in these systems. © 2002 Wiley Periodicals, Inc. Int J Quantum Chem, 2002     

Hydrogen bond effect on the molecular vibrations of indole

On the basis of both a solvent effect study on the infrared spectrum and CNDO/2 calculations, the existence and structure of at least two dimeric species of indole is proposed. The shortest distance between the nitrogen atom and the pyrrole ring of the nearest indole in dimers is about 2.8 Å. Some fundamental bands sensitive to the NH…π interaction were assigned.     

Hydrogen bond formation to cyclic and acyclic polyethers

Equilibrium constants and enthalpies of hydrogen-bond formation of mcresol to various cyclic (crown) and acyclic polyethers have been determined in benzene solvent. Equilibrium constants indicated no evidence for an operative macrocyclic effect; the relationship between the increasing size of the equilibrium constant and the number of ether oxygens was rationalized with a simple statistical thermodynamic model. Enthalpies of interactions ranged between –19 and –23 kJ-mol^–1. In agreement with PCILO calculations, enthalpies of interaction were essentially independent of the number of oxygen atoms in the ether; no significant difference in enthalpies of interaction between cyclic and acyclic ethers was found.