Enhanced Expression of Long Non-Coding RNA HOTAIR Is Associated with the Development of Gastric Cancer

The long non-coding RNA HOTAIR has been reported to be a poor prognostic biomarker in a variety of malignant tumors. However, little is known about the association of HOTAIR with gastric cancer. We examined the expression of HOTAIR in 68 gastric cancer samples using quantitative real-time RT-PCR and analyzed its correlation with the clinical parameters. The functional role of HOTAIR was examined by generating human gastric cancer cell lines with increased or suppressed HOTAIR expression. The anchorage -independent growth was assessed by soft agar assay. The increased or suppressed HOTAIR expressing gastric cancer cells were injected into the tail vein or peritoneal cavity of immunodeficient mice to examine the effect of this molecule on metastasis and peritoneal dissemination. The expression of HOTAIR was significantly higher in cancer lesions than in adjacent non-cancerous tissues in human gastric cancers. In the diffuse type of gastric cancer, the High-HOTAIR group (HOTAIR/GAPDH > 1) showed significantly more venous invasion, frequent lymph node metastases and a lower overall survival rate compared to the Low-HOTAIR group (HOTAIR/GAPDH < 1). Colony formation on the soft agar was enhanced in a HOTAIR-dependent manner. HOTAIR-expressing MKN74 formed more liver metastasis compared to control when they were injected into the tail vein of mice. In addition, reduced expression of HOTAIR in KATO III suppressed peritoneal dissemination. These results suggest that HOTAIR plays a pivotal role in the development of gastric cancer.     

长非编码RNA HOTAIR调控胃癌细胞SGC-7901来源肿瘤干细胞样细胞

肿瘤干细胞样细胞具有自我更新、无限增殖和多向分化能力,且受到长非编码RNA（long non-coding RNAs, lncRNAs）的调控。长非编码RNA HOTAIR在人胃癌细胞中表达升高,且具有调控功能。但目前对其在胃癌干细胞样细胞中的功能尚无研究。本研究的目的是探讨胃癌肿瘤干细胞中HOTAIR对肿瘤恶性行为的调控作用。本研究采用无血清培养基在补充细胞因子条件下培养SGC-7901细胞,获得悬浮生长的肿瘤干细胞样细胞微球,检测微球细胞的表面特征因子CD44、CD24及HOTAIR的表达量变化;并通过CCK-8、流式细胞分析及ELISA等技术探讨了HOTAIR对肿瘤干细胞样细胞功能调控作用。结果表明,无血清培养基中获得的肿瘤干细胞样细胞具有自我更新能力,其可连续传代细胞微球的比率为4.75%±0.76%;RT-qPCR检测显示,相对于SGC-7901细胞,肿瘤干细胞样细胞中的HOTAIR表达量明显升高;通过慢病毒干扰技术发现,HOTAIR干扰抑制了HLA-G蛋白分泌、促进肿瘤干细胞样细胞的细胞周期推进、细胞增殖和自我更新能力维持。本研究提示,胃癌细胞系SGC-7901中的肿瘤干细胞样细胞中HOTAIR表达量升高,并可能通过促进肿瘤干细胞样细胞干性调控肿瘤恶性行为。     

The Multifaceted Role of Long Non-Coding RNA in Gastric Cancer: Current Status and Future Perspectives

Gastric cancer (GC) is one of the major public health concerns. Long non-coding RNAs (lncRNAs) have been increasingly demonstrated to possess a strong correlation with GC and play a critical role in GC occurrence, progression, metastasis and drug resistance. Many studies have shed light on the understanding of the underlying mechanisms of lncRNAs in GC. In this review, we summarized the updated research about lncRNAs in GC, focusing on their roles in Helicobacter pylori infection, GC metastasis, tumor microenvironment regulation, drug resistance and associated signaling pathways. LncRNAs may serve as novel biomarkers for diagnosis and prognosis of GC and potential therapeutic targets. The research gaps and future directions were also discussed.     

Long Noncoding RNA MRUL Promotes ABCB1 Expression in Multidrug-Resistant Gastric Cancer Cell Sublines

Multidrug resistance (MDR) is the most common cause of chemotherapy failure in gastric cancer (GC) treatment; however, the underlying molecular mechanisms remain elusive. Long noncoding RNAs (lncRNAs) can be involved in carcinogenesis, but the effects of lncRNAs on MDR are poorly understood. We show here that the lncRNA MRUL (MDR-related and upregulated lncRNA), located 400 kb downstream of ABCB1 (ATP-binding cassette, subfamily B, member 1), was significantly upregulated in two multidrug-resistant GC cell sublines, SGC7901/ADR and SGC7901/VCR. Furthermore, the relative expression levels of MRUL in GC tissues were negatively correlated with in vitro growth inhibition rates of GC specimens treated with chemotherapeutic drugs and indicated a poor prognosis for GC patients. MRUL knockdown in SGC7901/ADR and SGC7901/VCR cells led to increased rates of apoptosis, increased accumulation, and reduced doxorubicin (Adriamycin [ADR]) release in the presence of ADR or vincristine. Moreover, MRUL depletion reduced ABCB1 mRNA levels in a dose- and time-dependent manner. Heterologous luciferase reporter assays demonstrated that MRUL might positively affect ABCB1 expression in an orientation- and position-independent manner. Our findings indicate that MRUL promotes ABCB1 expression and is a potential target to reverse the MDR phenotype of GC MDR cell sublines.     

Integrative Analysis of Normal Long Intergenic Non-Coding RNAs in Prostate Cancer

Recently, large numbers of normal human tissues have been profiled for non-coding RNAs and more than fourteen thousand long intergenic non-coding RNAs (lincRNAs) are found expressed in normal human tissues. The functional roles of these normal lincRNAs (nlincRNAs) in the regulation of protein coding genes in normal and disease biology are yet to be established. Here, we have profiled two RNA-seq datasets including cancer and matched non-neoplastic tissues from 12 individuals from diverse demography for both coding genes and nlincRNAs. We find 130 nlincRNAs significantly regulated in cancer, with 127 regulated in the same direction in the two datasets. Interestingly, according to Illumina Body Map, significant numbers of these nlincRNAs display baseline null expression in normal prostate tissues but are specific to other tissues such as thyroid, kidney, liver and testis. A number of the regulated nlincRNAs share loci with coding genes, which are either co-regulated or oppositely regulated in all cancer samples studied here. For example, in all cancer samples i) the nlincRNA, TCONS_00029157, and a neighboring tumor suppressor factor, SIK1, are both down regulated; ii) several thyroid-specific nlincRNAs in the neighborhood of the thyroid-specific gene TPO, are both up-regulated; and iii) the TCONS_00010581, an isoform of HEIH, is down-regulated while the neighboring EZH2 gene is up-regulated in cancer. Several nlincRNAs from a prostate cancer associated chromosomal locus, 8q24, are up-regulated in cancer along with other known prostate cancer associated genes including PCAT-1, PVT1, and PCAT-92. We observe that there is significant bias towards up-regulation of nlincRNAs with as high as 118 out of 127 up-regulated in cancer, even though regulation of coding genes is skewed towards down-regulation. Considering that all reported cancer associated lincRNAs (clincRNAs) are biased towards up-regulation, we conclude that this bias may be functionally relevant.     

A Long Non-Coding RNA snaR Contributes to 5-Fluorouracil Resistance in Human Colon Cancer Cells

Several types of genetic and epigenetic regulation have been implicated in the development of drug resistance, one significant challenge for cancer therapy. Although changes in the expression of non-coding RNA are also responsible for drug resistance, the specific identities and roles of them remain to be elucidated. Long non-coding RNAs (lncRNAs) are a type of ncRNA (> 200 nt) that influence the regulation of gene expression in various ways. In this study, we aimed to identify differentially expressed lncRNAs in 5-fluorouracil-resistant colon cancer cells. Using two pairs of 5-FU-resistant cells derived from the human colon cancer cell lines SNU-C4 and SNU-C5, we analyzed the expression of 90 lncRNAs by qPCR-based profiling and found that 19 and 23 lncRNAs were differentially expressed in SNU-C4R and SNU-C5R cells, respectively. We confirmed that snaR and BACE1AS were downregulated in resistant cells. To further investigate the effects of snaR on cell growth, cell viability and cell cycle were analyzed after transfection of siRNAs targeting snaR. Down-regulation of snaR decreased cell death after 5-FU treatment, which indicates that snaR loss decreases in vitro sensitivity to 5-FU. Our results provide an important insight into the involvement of lncRNAs in 5-FU resistance in colon cancer cells.     

长链非编码RNA UCA1与肿瘤耐药

作为针对恶性肿瘤的有效治疗方式,化疗已被广泛用于治疗各种恶性肿瘤。虽然化学治疗提高了患者的存活率及预后水平,但肿瘤迅速形成的多药耐药会导致治疗失败。近年发现,作为促多药耐药基因的lncRNA UCA1介导多种肿瘤形成耐药。该文回顾了UCA1在肿瘤耐药中的研究进展,并展望了该领域未来的发展及面临的挑战。     

Upregulation of the Non-Coding RNA OTUB1-isoform 2 Contributes to Gastric Cancer Cell Proliferation and Invasion and Predicts Poor Gastric Cancer Prognosis

Background: The deubiquitinase OTUB1 plays critical oncogenic roles and facilitates tumor progression in cancer. However, less is known regarding the aberrant expression, clinical significance and biological functions of the non-coding RNA OTUB1-isoform 2. We aimed to evaluate the OTUB1-isoform 2 levels in gastric cancer and their possible correlation with clinicopathologic features and patient survival to reveal its biological effects in gastric cancer progression.Methods: Total RNA extraction was performed on 156 gastric cancer case samples, and RT-qPCR was conducted. Chi-square test analysis was used to calculate the correlation between pathological parameters and the OTUB1-isoform 2 mRNA levels. Kaplan-Meier and Cox proportional hazards analyses were used to analyze the overall survival (OS) and disease-free survival (DFS) rates. Nuclear and cytoplasmic RNAs were isolated to detect the subcellular localization of OTUB1-isoform 2. We also assessed whether overexpression of OTUB1-isoform 2 influenced in vitro cell proliferation, cell cycle progression, tumor cell invasion and migration, as well as in vivo nude mouse xenograft and metastasis models.Results: The OTUB1-isoform 2 expression levels were higher in the gastric cancer samples than in the paratumorous gland samples. OTUB1-isoform 2 expression levels tightly correlated with tumor size, lymph node metastasis and TNM staging. Higher OTUB1-isoform 2 expression levels led to significantly poorer OS and DFS rates, and a multivariate analysis revealed that OTUB1-isoform 2 was an independent risk factor for DFS. OTUB1-isoform 2 was predominantly localized in the cell nucleus. Ectopic overexpression of OTUB1-isoform 2 in gastric cancer cells stimulated proliferation by inducing G₁-S transition, suppression of cell apoptosis and promotion of tumor cell invasion and migration. Finally, OTUB1-isoform 2 overexpression promoted tumor growth and tumor metastasis in nude mice models.Conclusions: Our study suggests that OTUB1-isoform 2 independently predicts poor prognosis and promotes tumor progression in gastric cancer. The non-coding RNA OTUB1-isoform 2 should be targeted in future molecular therapies.     

与生物体发育相关的非编码RNA及其作用机理

非编码RNA是一类没有开放阅读框、不能翻译成为蛋自质的RNA分子。在哺乳动物中,它们主要是指微小RNA、小干扰RNA、PIWI互作RNA和其他一些反义转录本等。它们在生物体内广泛存在,通过RNA干扰、基因沉默、基因印迹和DNA甲基化等机制调控着基因的表达。非编码RNA增加了真核细胞调控网络的复杂性,也为科学地解释一些现象提供了新的途径。     

长链非编码RNA顺式调节作用机制的研究进展

长链非编码RNA (long non-coding RNA, lncRNA)种类众多,生物学功能复杂,与不同的分子相互作用,实现其特有的基因调控功能。可参与细胞核染色质结构的调控、m RNA的转录及转录后的加工运输、蛋白质的翻译等过程。此外,lncRNAs在邻近基因或靶基因的顺式调节机制中也发挥了重要作用,本综述主要对近年来lncRNAs通过顺式调节作用影响基因表达的机制进行综述。     

长非编码RNA-Tug1在大脑皮层发育过程中的初步研究

哺乳动物大脑皮层发育过程中,神经前体细胞精密有序地产生不同类型的子代细胞,如神经元和胶质细胞.特异转录因子精确激活或抑制性状决定基因在该过程中发挥决定性作用.最近的研究发现,长非编码RNA(lncRNA)在器官发育和疾病发生过程中发挥重要的基因调控功能,但lncRNA在大脑皮层发育过程中发挥的作用尚不清楚.本研究发现,在小鼠大脑皮层发育过程中,lncRNA-Tug1的表达量随着神经元的产生而显著上调.组织原位杂交显示,在皮层发育的几个关键时期,Tug1广泛分布于背侧前脑神经前体细胞及其子代细胞中.应用小鼠子宫内电穿孔技术敲低Tug1,发现Tug1对神经前体细胞的增殖或分化没有显著性影响.本研究构建了特异针对Tug1转录起始位点上游的TALEN表达载体,在培养的小鼠细胞里发现它们具有显著的切割效率.下一步将在Tug1转录起始位点5′端敲入多聚腺苷酸尾(Poly A)信号片段,以构建Tug1失活小鼠模型,研究Tug1在皮层发育过程中的作用,并探索高效建立lncRNA失活小鼠模型的途径.     

长链非编码RNA的功能与疾病治疗的潜力

人类基因组转录本长度>200 nt（核苷酸）、不编码蛋白质的RNA分子为长链非编码RNA（long non-coding RNA,lncRNA)。lncRNA可在多个层面调节基因表达,其功能失调与包括肿瘤在内的很多人类疾病密切相关。本文概述lncRNA的种类、功能与疾病的关系,讨论基于lncRNA基因编辑、干细胞修饰及其与miRNA、蛋白质相互作用等的治疗潜能。