The influence of conditions in Lake Superior and the Bois Brule River,Wisconsin on returns of migratory rainbow trout

Rainbow trout were introduced to Lake Superior in the late 1800’s and exhibit a potamodromous life history and exhibit high variability in reproductive success. We examined reproductive variability in the Bois Brule River, WI (Lake Superior), through analyses of returns of wild first spawning (hereafter “maiden” returning) adults. We used classification and regression tree analyses to identify in-stream and in-lake (western Lake Superior) sources of variability and to identify the environment (stream or lake) that was most influential to the returns to each location. Among in-stream influences, high discharge rates in the spring period (March – May) during a pre-smolt’s first stream year were the strongest source of variability and were negatively correlated with returns. High discharge during the fall period from September to November in the pre-smolt first stream year was also negatively correlated with numbers of maiden returning steelhead from that year class. When variables associated with Lake Superior were considered, maiden returns were positively correlated with higher lake surface temperatures in Lake Superior. Returns were negatively correlated with the abundance of adult rainbow smelt and bloater suggesting a possible competitive interaction among those species. Finally, we also observed a conditional (minor) positive effect of age-0 smelt abundance indicating the importance of this prey for juveniles in colder years in western Lake Superior. Taken together, our findings indicate that both stream and lake conditions in their first lake year are important sources of variability and point to spates in the spring and fall as initial controlling variables.     

Progress Toward the Rehabilitation of Lake Trout (Salvelinus namaycush) in South Bay,Lake Huron

Our objective was to evaluate the status of lake trout Salvelinus namaycush rehabilitation in South Bay, Lake Huron. Standardized surveys were conducted to quantify natural recruitment, annual mortality, and the contribution of wild-versus hatchery-origin lake trout. Some indicators suggest a high level of natural recruitment. The spawning population was comprised of multiple ages, and the mean age of spawners (8.4 years for females, 7.9 years for males) was at least 1 year older than the age at 50% maturity (5.8 years). Estimated annual total mortality rates (0.20–0.25) and sea-lamprey induced mortality rates (0.02) were less than maximum allowable values. The proportion of wild-origin fish captured was high among spawners but varied among sampling programs (42% in fall trap nets, 70% in fall gill nets, and 88% in summer gill nets). A strong year class (1997) could be tracked from 2001 to 2005. Few fish were captured from early (< 1996) or later (1999–2002) year classes. Possible explanations for low natural recruitment during these later years include declining spawning habitat quality caused by low water levels and/or invasion of non-native mussels (Dreissena spp.) and/or direct or indirect effects of alewife (Alosa pseudoharengus).     

Genetic assessment of straying rates of wild and hatchery reared lake sturgeon (Acipenser fulvescens) in Lake Superior tributaries

Natal philopatry in lake sturgeon (Acipenser fulvescens) has been hypothesized to be an important factor that has lead to genetically distinct Great Lakes populations. Due to declining abundance, population extirpation, and restricted distribution, hatchery supplementation is being used to augment natural recruitment and to reestablish populations. If hatchery-reared lake sturgeon are more likely to stray than naturally produced individuals, as documented in other well-studied species, outbreeding could potentially jeopardize beneficial site-specific phenotypic and genotypic adaptations. From 1983 to 1994, lake sturgeon propagated using eggs taken from Lake Winnebago adults (Lake Michigan basin) were released in the St. Louis River estuary in western Lake Superior. Our objective was to determine whether these introduced individuals have strayed into annual spawning runs in the Sturgeon River, Michigan. Additionally, we estimated a natural migration rate between the Sturgeon River and Bad River, Wisconsin populations. Presumed primiparous lake sturgeon sampled during Sturgeon River spawning runs from 2003 to 2008 were genotyped at 12 microsatellite loci. Genotypic baselines established for the Sturgeon River (n = 101), Bad River (n = 40), and Lake Winnebago river system (n = 73) revealed a relatively high level of genetic divergence among populations (mean F_ST = 0.103; mean R_ST = 0.124). Likelihood-based assignment tests indicated no straying of stocked Lake Winnebago strain lake sturgeon from the St. Louis River into the Sturgeon River spawning population. One presumed primiparous Sturgeon River individual likely originated from the Bad River population. Four first-generation migrants were detected in the Sturgeon River baseline, indicating an estimated 3.5% natural migration rate for the system.     

Movement and growth indicators in resident and adfluvial coaster brook trout (Salvelinus fontinalis) in the Hurricane River,Lake Superior,Michigan, USA

Brook trout (Salvelinus fontinalis) are found throughout Lake Superior, Lake Nipigon, and their tributaries. Lacustrine and adfluvial life history variants were historically popular with anglers and were called coasters; coaster brook trout populations are now severely reduced and are of conservation concern. Coasters were known to grow larger and mature later than their stream resident counterparts. This study compared movement patterns, age, size, condition, and relative weight of wild coaster and resident brook trout from the Hurricane River, Pictured Rocks National Lakeshore, Michigan. Wild brook trout ≥ 100 mm from the Hurricane River downstream from Hurricane Falls were tagged with passive integrated transponder tags and monitored for stream-lake movement behavior from May 2003 to November 2007. During 2006 and 2007, brook trout were scale sampled and aged to construct a regression that was then used to calculate the age of all brook trout tagged from 2003 to 2007. Most brook trout movement took place in the fall with October the peak month of emigration with a secondary peak in late spring/early summer and some activity nearly year round. There were no differences found in age structure, size or condition between coasters and residents while in the stream. Our data suggest that a priori growth differences are not determining the expression of coaster outmigration and that stream-lake movements made by coasters, likely driven by habitat requirements, may be highly flexible and facultative.     

Lake Trout (Salvelinus Namaycush) Spawning Habitat in Seneca Lake,New York

Lake trout from Seneca Lake provide an important source of stock for Great Lakes rehabilitation but the lake trout in Seneca Lake have been hatchery supported, themselves, for many years. Hatchery catch data show a continued decline in lake trout population and this is assumed to reflect changes in hatchery stocking, fishing pressure, and lamprey predation. A commensurate increase in the smelt population, since 1973, may have also contributed to the decrease of natural recruitment by lake trout. No indication of reduced egg survival was found in the hatchery which might be related to lake contamination effects. Our survey observations (1980–81) indicate that the lower parts of deep water cobble gravels have become much degraded by fine particulates, making such sites unsuitable for spawning lake trout. It is thought that natural replacement in Seneca Lake is strongly dependent on successful hatch of eggs laid at depths of 25 to 35 m, but the observed relationship between egg deposition and optimal thermal conditions seems to be anomalous. Since no controlling relationship was found between long-term decline of the lake trout population and climatic variation, it is believed that degradation of lake spawning sites has strongly influenced natural recruitment.     

Catches of Larval Rainbow Smelt (Osmerus Mordax) and Alewife (Alosa Pseudoharengus) in Plankton Nets of Different Mesh Sizes

Four 0.5-m plankton nets (one each of 0.355-, 0.450-, 0.560-, and 0.750-mm mesh) were used to collect larvae of the alewife (Alosa pseudoharengus) and rainbow smelt (Osmerus mordax) in northwestern Lake Huron and the St. Marys River. The number of larvae collected varied inversely with mesh size and the average length of larvae varied directly with mesh size. Numbers of each species caught in 0.355- and 0.450-mm mesh nets were significantly greater (P < 0.01) than the numbers caught in 0.560- and 0.750-mm mesh nets. Numbers of alewives caught were significantly greater (P < 0.01) in the 0.355- than in the 0.450-mm mesh, but numbers of rainbow smelt caught in the two meshes were about equal. Between the two larger-mesh nets, numbers of each species caught did not differ significantly. Nets with mesh larger than 0.355 mm were less effective at catching recently hatched larvae, and this reduced effectiveness accounted wholly for the smaller numbers caught in the 0.450-mm mesh net. Smaller numbers were caught in the 0.560- and 0.750-mm mesh nets not only because they caught fewer recently hatched larvae but also because they failed to retain older, larger larvae. Information on the effect of mesh size and towing speed on catches of larvae is important for making accurate estimates of larval densities.     

Evidence of lake trout (Salvelinus namaycush) spawning and spawning habitat use in the Dog River,Lake Superior

Lake trout spawn primarily in lakes, and the few river-spawning populations that were known in Lake Superior were believed to be extirpated. We confirmed spawning by lake trout in the Dog River, Ontario, during 2013–2016 by the collection of and genetic identification of eggs, and we describe spawning meso- and microhabitat use by spawning fish. Between 2013 and 2016, a total of 277 lake trout eggs were collected from 39 of 137 sampling locations in the river. The majority of eggs (220) were collected at the transition between the estuary and the river channel crossing the beach. Lake trout eggs were most often located near the downstream end of pools in areas characterized by rapid changes in depth or slope, coarse substrates, and increased water velocities, where interstitial flows may occur. Depths in wadeable areas where eggs were found averaged 0.9?m (range: 0.4 to 1.3?m) and substrate sizes consisted of large gravel, cobble, and boulder; comparable to spawning characteristics noted in lakes. Water velocities averaged 0.66?m·s^?1 (range: 0.33 to 1.7?m³·s^?1) at mid-depth. This information on spawning habitat could be used to help locate other remnant river-spawning populations and to restore river-spawning lake trout and their habitat in rivers that previously supported lake trout in Lake Superior. The Dog River population offers a unique opportunity to understand the ecology of a river spawning lake trout population.     

Distribution,Abundance, and Range of the Round Goby,Apollina melanostoma,in the Duluth-Superior Harbor and St. Louis River Estuary, 1998–2004

Round gobies were first discovered in the Duluth-Superior Harbor, Lake Superior, in 1995. Anecdotal sightings by anglers and others suggested that the infestation was growing and expanding; however, direct evidence of the distribution and expansion rate in the harbor was largely unknown. Distribution and range of the round goby, Apollonia melanostoma, (formerly Neogobius melanostomus) was assessed using bottom trawl sampling throughout the Duluth-Superior Harbor, and portions of the lower St. Louis River from 1998 to 2004. Previous to 1998, round gobies only were reported to occupy the harbor between the two shipping entries (river kilometer 1 to 7). By 2004, they expanded throughout the harbor and upstream to river kilometer 13, but remained absent in western Lake Superior. The number of round gobies captured per 5 minutes of trawling (catch per unit effort, CPUE) increased from less than 1 fish in 1998 to an average 5.4 ± 1.2 SE fish in 2004, indicating a large increase in the population. The median yearly fish total length varied from 56.0 to 81.5 mm and wet weight varied from 2.3 to 7.0 g. As nest guarding male round gobies were located in rocky habitats inaccessible to trawling, the initial years were dominated by female round gobies with a 16:1 female to male ratio, but by 2002 the maximum ratio was 2:1. The ratio change may be indicative of the increasing population forcing males from their preferred rocky habitat onto open substrates that were more accessible to trawling.     

Status and trends of the Asian clam (Corbicula fluminea) in the lower Fox River and Green Bay

In the upper Great Lakes region, survival and population growth of the non-indigenous Asian clam Corbicula fluminea has been limited by cold climates that cause severe overwinter mortality. At these northern latitudes, Asian clam populations are often limited to thermal refugia – particularly warmwater discharges from industrial facilities. Several such facilities exist in the lower Fox River in Green Bay. Asian clams were first documented in the lower Fox River in 1999 and were extensively surveyed near the river mouth in 2011, but the few individuals found were restricted to the warmwater discharge from the Pulliam Power Plant. We performed a follow-up survey during 2017 to re-assess the population status of Asian clams in the lower Fox River at four industrial discharges, including the Pulliam Power Plant. We found more widespread evidence of Asian clams throughout the lower Fox River than previous surveys, but only one live individual was captured. We suspect that the back-to-back severe winters of 2013–2014 and 2014–2015 caused widespread overwinter mortality. Our investigation highlights the significant challenges for establishment of Asian clam populations in the upper Great Lakes region, and provides an example of a potential invasive species struggling to establish a viable population in a hostile climate.     

Distribution of the Amphipod Diporeia in Lake Superior: The Ring of Fire

Diporeia, formerly the dominant benthic macroinvertebrate in the Great Lakes, remains a keystone species in Lake Superior. Little is known, however, about fine scale amphipod distributions, especially as influenced by the production, transport and transformation of energy resources. Here, we document the distribution and abundance of Diporeia along 19 transects around the lake's perimeter. Regions of elevated density, averaging 958 ± 408 Diporeia/m² (mean ± S.D.) were observed along all transects, typically within slope habitat (depth of 30–125 m). Waters shoreward (shelf habitat, < 30 m) and lakeward (profundal habitat, > 125 m) of these regions supported significantly lower densities, averaging 239 ± 178/m² and 106 ± 59/m², respectively. Amphipods within regions of elevated density, termed here the Ring of Fire, account for two-thirds of the lakewide population while occupying only one-quarter of the benthic habitat. The Ring of Fire, observed lakewide as a band averaging 14.2 ± 9.4 km in width, is characterized as a region of transitional sediment deposition with gentle slope, proximate to nearshore locations of elevated primary production. Within the Ring of Fire exceptionally high densities are found in the south central region, where the Keweenaw Current and slope bathymetries serve to funnel production from adjoining regions of high production. Density measurements for the 173 stations sampled here are used to estimate lakewide Diporeia standing stock (22.5–37.7 trillion individuals, 4.4–7.4 Gg dry weight, 2.1–3.5 Gg C), individual and biomass density (274–460/m², 0.05–0.09 g DW/m², 0.03–0.04 gC/m²) and areal (0.02–0.03 g C/m²/yr) and total (1.6–2.6 Gg C/yr) production.     

Landscape Evolution and Deglaciation of the Upper Peninsula,Michigan: An Examination of Chronology and Stratigraphy in Kettle Lake Cores

We propose a radiometric chronology bracket for the last glacial advance/retreat, called the Marquette readvance, in the Upper Peninsula of Michigan (Upper Peninsula) using organic material from kettle lakes and previously published age determinations on wood buried by glaciofluvial sediments. The lakes are located both inside and outside the ice-contact margin of the Marquette readvance. Wood buried in glaciofluvial sediments from the Marquette readvance was previously dated at 10,025 ± 100 ¹⁴C yr BP (Hughes and Merry 1978, Lowell et al. 1999, and Pregitzer et al. 2000). Ackerman Lake, a kettle lake located inside the ice-contact margin, yielded a basal radiocarbon date of 9,495 ± 70 ¹⁴C yr BP representing the time of organic accumulation after ice retreat. These dates above and below the glacial deposit bracket the age of the Marquette readvance/retreat to 360–700 ¹⁴C yr, or the midpoint of 530 ¹⁴C yr. Ackerman Lake yielded multiple radiocarbon dates, including an average date of 8,811 ± 11 ¹⁴C yr BP (9,736–9,913 cal yr BP) at a change in stratigraphy from red clay to gray silt. This transition along the northern Upper Peninsula is interpreted to represent ice sheet retreat into Lake Superior and the reworking of older glacial sediments by ∼8,500 ¹⁴C yr BP. Organic material from the kettle lake sediments spanning multiple geomorphic locations (both inside and outside of the ice-contact margin) and previous radiocarbon dates from the entire Upper Peninsula yielded dates concentrating around 9,500 ¹⁴C yr BP. We attribute this synchronous organic accumulation in the Upper Peninsula to be a result of climatic signature corresponding with the Preboreal Oscillation, so the duration of the Marquette glacial cover may have been less then implied by the Ackerman Lake basal age.     

A 200 year chronology of burrowing mayflies (Hexagenia spp.) in Saginaw Bay

After an absence of 50 years, burrowing mayflies (Hexagenia spp.) colonized western Lake Erie which led to interest in whether this fauna can be used to measure recovery in nearshore waters throughout the Great Lakes. However, in many areas we do not know if mayflies were native/endemic and thus, whether recovery is a logical measure to assess progress of recovery. In the present study, we construct a chronologic record of relative abundance of burrowing mayflies in Saginaw Bay by the use of mayfly tusks and radionuclides in sediments (i.e., a paleoecologic record) and historic records of mayfly nymphs in the bay. These records reveal that mayflies: (1) were few before 1799, which indicates that nymphs were probably native/endemic in the bay, (2) increased between 1799 and 1807 and remained at relatively high levels between 1807 and 1965, probably in response to increased nutrient run-off from the watershed, (3) declined dramatically between 1965 and 1973, probably as a result of excessive eutrophication in the mid-1950s; and, (4) were few and highly variable between 1973 and 2001, probably as a result of low and unstable abundances of mayfly nymphs. Historic records verify that nymphs disappeared in the bay in the late-1950s to early-1960s which is in agreement with the paleoecologic record. Reoccurrence of low abundances of nymphs in the bay between 1991 and 2008 and comparison of chronologic records of nymphs in Saginaw Bay and western Lake Erie suggest that mayflies may return to Saginaw Bay in the early-21st century. Undoubtedly, watershed conservation and three decades of pollution abatement have set the stage for a recovery of burrowing mayflies in Saginaw Bay, and possibly in other areas of the Great Lakes.     

Food of Young-of-the-Year Lake Trout (Salvelinus Namaycush) in Presque Isle Harbor,Lake Superior

The food habits of young lake trout (Salvelinus namaycush) were studied by examining the digestive tracts of 293 young-of-the-year collected in Presque Isle Harbor, Lake Superior. Lake trout in the 25 to 27-mm length range started to eat food organisms before all of their yolk material was absorbed. Organisms consumed by the 25 to 27-mm young-of-the-year included Chironomidae, Copepoda (Harpacticoida, Calanoida, Cyclopoida), and Cladocerea (Daphnia spp., Bosmina sp., Chydorus sp.). Chironomid pupae and chironomid larvae accounted for 74% and 5%, respectively, of the total volume of food eaten by the young lake trout in Presque Isle Harbor. Although copepods, cladocerans, and mysids were present in many stomachs, their contribution to the total volume of food was only 15%. Some lake trout in the 32 to 54-mm length range had consumed fry of sculpin (Cottus spp.) or rainbow smelt (Osmerus mordax), but the overall contribution of fish fry to the total volume of food was only 4% (frequency of occurrence, 10%). The lake trout in Presque Isle Harbor fed heavily on planktonic organisms, sparingly on benthic organisms, and were opportunistic feeders that appeared to prey on whatever forage organisms were available in the shallow nearshore waters.     

Burrowing mayfly (Ephemeroptera: Ephemeridae: Hexagenia spp.) bioturbation and bioirrigation: A source of internal phosphorus loading in Lake Erie

Traditional lake eutrophication models predict lower phosphorus concentrations with decreased external loads. However, in lakes where decreased external phosphorus loads are accompanied by increasing phosphorus concentrations, a seeming “trophic paradox” exists. Western Lake Erie is an example of such a paradox. Internal phosphorus loads may help explain this paradox. We examined bioturbation and bioirrigation created from burrowing mayfly, Hexagenia spp., as a possible source of internal phosphorus loading. Phosphorus concentrations of experimental microcosms containing lake sediments, filtered lake water, and nymphs (417/m²) collected from western Lake Erie were compared to control microcosms containing sediments and lake water over a 7-day period. Phosphorus concentrations in microcosms containing Hexagenia were significantly greater than microcosms without nymphs. Further, we estimate the soluble reactive phosphorus flux from the sediments due to Hexagenia is 1.03 mg/m²/day. Thus, Hexagenia are a source of internal phosphorus loading. High densities of Hexagenia nymphs in western Lake Erie may help explain the “trophic paradox.” Furthermore, Hexagenia may be a neglected source of internal phosphorus loading in any lake in which they are abundant. Future studies of phosphorus dynamics in lakes with Hexagenia must account for the ability of these organisms to increase lake internal phosphorus loading.     

The effect of mayfly (Hexagenia spp.) burrowing activity on sediment oxygen demand in western Lake Erie

Previous studies support the hypothesis that large numbers of infaunal burrow-irrigating organisms in the western basin of Lake Erie may increase significantly the sediment oxygen demand, thus enhancing the rate of hypolimnetic oxygen depletion. We conducted laboratory experiments to quantify burrow oxygen dynamics and increased oxygen demand resulting from burrow irrigation using two different year classes of Hexagenia spp. nymphs from western Lake Erie during summer, 2006. Using oxygen microelectrodes and hot film anemometry, we simultaneously determined oxygen concentrations and burrow water flow velocities. Burrow oxygen depletion rates ranged from 21.7 mg/nymph/mo for 15 mm nymphs at 23 °C to 240.7 mg/nymph/mo for 23 mm nymphs at 13 °C. Sealed microcosm experiments demonstrated that mayflies increase the rate of oxygen depletion by 2–5 times that of controls, depending on size of nymph and water temperature, with colder waters having greater impact. At natural population densities, nymph pumping activity increased total sediment oxygen demand 0.3–2.5 times compared to sediments with no mayflies and accounted for 22–71% of the total sediment oxygen demand. Extrapolating laboratory results to the natural system suggest that Hexagenia spp. populations may exert a significant control on oxygen depletion during intermittent stratification. This finding may help explain some of the fluctuations in Hexagenia spp. population densities in western Lake Erie and suggests that mayflies, by causing their own population collapse irrespective of other environmental conditions, may need longer term averages when used as a bio-indicator of the success of pollution-abatement programs in western Lake Erie and possibly throughout the Great Lakes.     

Philopatry and vagrancy of white bass (Morone chrysops) spawning in the Sandusky River: Evidence of metapopulation structure in western Lake Erie using otolith chemistry

Although natal homing and philopatry are well studied in anadromous salmon, few studies have investigated philopatric behavior in large, freshwater systems. In western Lake Erie, white bass (Morone chrysops) undergo seasonal spawning migrations from the open-water regions of Lake Erie to nearshore reef complexes and tributaries. The three primary spawning locations in Lake Erie are within 80 km of each other and are not separated by physical barriers. We used naturally occurring differences in otolith strontium concentrations among major spawning locations to address philopatry and vagrancy to the Sandusky River spawning location. Most individuals spawning in the Sandusky River were natal to this river (73%). No statistically significant differences in the extent of homing by sex or age of spawning were found, although a potential pattern of decreased homing with increased age of fish was observed. Given the proportion of vagrant individuals we found spawning in the Sandusky River (27%), it is unlikely that Lake Erie white bass spawning populations are genetically distinct. Furthermore, the white bass population in Lake Erie appears to be structured as a metapopulation, with non-philopatric individuals serving as a link between spawning populations.     

First report of tubenose goby (Proterorhinus semilunaris) in the eastern basin of Lake Erie

The tubenose goby (Proterorhinus semilunaris), native to the Ponto-Caspian region, was first discovered in the Laurentian Great Lakes in 1990 after it was introduced through ballast water discharge. Compared with Neogobius melanostomus, another exotic gobiid from the Ponto-Caspian, colonization of the Great Lakes by P. semilunaris has been slow, with reports of the species being largely confined to the Huron-Erie Corridor (HEC) and western portions of Lake Erie and Lake Superior. This is the first report of P. semilunaris in the Great Lakes east of the western basin of Lake Erie. Between 28 June and 27 July, 2012, 176 P. semilunaris were collected from shallow (< 1.2 m) water of Marina Lake, a 40 ha embayment in Presque Isle State Park (Erie, PA). The large number of P. semilunaris collected at the site and the presence of individuals as small as 17 mm total length suggest an established population. However, the mechanism by which P. semilunaris was introduced to Presque Isle Bay is not clear.     

Spatial genetic structure and recruitment dynamics of burbot (Lota lota) in Eastern Lake Michigan and Michigan tributaries

Burbot (Lota lota) are the only freshwater member of the Cod like (Lotidae) family that have a circumpolar distribution and occupy the widest geographic distribution of all Laurentian Great Lakes fish species. Information regarding burbot spatial genetic structure and recruitment dynamics is critical for the development of effective management strategies. Although burbot are a species of conservation concern throughout their range, little demographic or behavioral information exists. We estimated levels of genetic diversity within, and the degree of spatial population structure between samples collected from Lake Michigan and tributaries of the Manistee River, MI. Measures of genetic diversity across 10 microsatellite loci were moderately high. Disparities between adult groups sampled in Lake Michigan and the Manistee River were notable for observed heterozygosity (0.662 vs 0.488) and allelic richness (11.7 vs 6.6). Significant levels of inter-population variance in microsatellite allele frequencies (F_ST 0.154 to 0.208) were detected between Lake Michigan and the Manistee River samples. Results indicate reproductive isolation between what plausibly may be riverine and lacustrine spawning life history types. Pedigree analyses for three cohorts sampled in the Manistee River revealed that a sizeable number of adults contributed reproductively to multiple cohorts, indicating spawning philopatry. While data were collected from restricted areas in lacustrine and river habitats, analyses revealing microgeographic genetic structuring, potentially attributed to life history polymorphisms, have significant implications for burbot management in the Great Lakes.     

Asymmetric Hybridization of Pink (Oncorhynchus gorbuscha) and Chinook (O. tshawytscha) Salmon in the St. Marys River,Michigan

Natural hybridization between pink salmon (Oncorhynchus gorbuscha) and Chinook salmon (O. tshawytscha) has been observed only in the Great Lakes, where both species have been introduced. The direction of hybridization between these species is poorly understood, thus the present study analyzed mitochondrial DNA (mtDNA) to determine whether the maternal parents were pink or Chinook salmon. During annual salmon population surveys on the St. Marys River (1998–2002), fifty putative hybrids of pink salmon and Chinook salmon were identified from meristic, morphometric and color characters. We designed primers to amplify a fragment of the mitochondrial D-loop control region that included both a variable and a control restriction site (BstNI). Polymerase chain reaction, restriction endonuclease digestion and capillary electrophoresis of mtDNA were used in order to identify the maternal parent of each hybrid salmon. In addition, the amplified fragments from the three fish species were sequenced to further verify the results. All hybrid salmon specimens were found to possess Chinook salmon mtDNA, indicating that hybridization between Chinook salmon and pink salmon is asymmetrical and likely unidirectional, occurring only between male pink salmon and female Chinook salmon. Influences contributing to the hybridization of these salmonid species could include limited spatial and temporal segregation of spawners, sexual selection, a limiting number of Chinook males, and/or physiological factors.