A theoretical study on the alkene insertion step in Rh-Yanphos catalyzed hydroformylation

This paper studied the mechanism of the alkene insertion elementary step in the asymmetric hydroformylation （AHF） catalyzed by RhH（CO）2[（R,S）-Yanphos] using four alkene substrates （CH2=CH- Ph, CH2=CH-Ph-（p）-Me, CH2=CH-C（==O）OCH3 and CH2=CH-OC（=O）-Ph, abbreviated as A1-A4）. Interestingly, the equatorial vertical coordination mode （A mode） with respect to the Rh center was found for AI and A2 but not for A3 and A4, although the equatorial in-plane coordination mode （E mode） was found for A1 -A4. The relative energy of the E mode of the -q2-intermediates is lower than that of the A mode. In the alkene insertion step, Path 1 is more favorable than Path 2 for this system. As for AI and A2, there could be a transformation between 2eq and 2ax.     

Oxidation and reduction of nanodiamond particles in colloidal solutions by laser irradiation or radio-frequency plasma treatment

Functionalized nanodiamond particles (NDs) represent carbon nanomaterial with unique properties for various applications. Here we report on a new approach to surface modification of NDs by their exposure to radio frequency (RF) plasma or laser irradiation (LI) plasma directly in aqueous solution. By using grazing angle reflectance Fourier transform infrared spectroscopy and supporting analysis by X-ray photoelectron spectroscopy, zeta-potential, and Kelvin force microscopy we show that surface chemistry of NDs produced by detonation process (DNDs) or high-pressure high-temperature process (HPHT NDs) works in different way. Moieties on as-received NDs are dominated by COOH and COC groups due to wet chemical cleaning procedures. On DNDs, both RF and LA treatment lead to removal of sp² shell and additional oxidation of the surface to C OC groups. On HPHT NDs the RF treatment leads to reduction of COC groups that are transformed into COH and CH moieties. Thus at least partial hydrogenation of colloidal HPHT NDs seems feasible.     

Frequencies and absorption intensities of the fundamental and the first overtone of NH stretching vibrations of pyrroleacetylene and pyrroleethylene complexes studied by density-functional-theory calculation

The structures of pyrroleacetylene and pyrroleethylene complexes which form an NH–π hydrogen bonding were calculated by density-functional-theory calculation. The wavenumbers and absorption intensities of the fundamental and the first overtone of NH stretching of the complexes were investigated to compare effects of the hydrogen bonding on the fundamental and the first overtone of the NH stretching mode. One-dimensional Schrödinger equation in consideration of molecular vibrational anharmonicity was used for the estimation of the wavenumbers and absorption intensities of NH stretching modes of the complexes; it was found that the NH–π hydrogen-bond formation induced lower wavenumber shift for both the fundamentals and first-overtones of NH stretching mode and it increases absorption intensities of the fundamentals and decreases those of first overtones of NH stretching mode.     

In silico quest for stable phosphastannaallenes

A computational study at different levels of theory was performed for the not yet synthesized phosphastannaallenes >SnCP– in order to evaluate the strength of the SnC bond, the main postulated factor to stabilize such species, and the geometry in R₂SnCPR derivatives. The influence of the substituents with various electronic effects (H, Me, Ph, F, Cl, OMe, SiMe₃) at the Sn or P atoms of the SnCP unit on the SnC bond order was evaluated in the quest for a substituent that would stabilize the phosphastannaallenic unit. PC bond orders have also been calculated.     

Thermal decomposition mechanism of levoglucosan during cellulose pyrolysis

Levoglucosan (1,6-anhydro-β-d-glucopyranose) decomposition is an important step during cellulose pyrolysis and for secondary tar reactions. The mechanism of levoglucosan thermal decomposition was studied in this paper using density functional theory methods. The decomposition included direct CO bond breaking, direct CC bond breaking, and dehydration. In total, 9 different pathways, including 16 elementary reactions, were studied, in which levoglucosan serves as a reactant. The properties of the reactants, transition states, intermediates, and products for every elementary reaction were obtained. It was found that 1-pentene-3,4-dione, acetaldehyde, 2,3-dihydroxypropanal, and propanedialdehyde can be formed from the CO bond breaking decomposition reactions. 1,2-Dihydroxyethene and hydroxyacetic acid vinyl ester can be formed from the CC bond breaking decomposition reactions. It was concluded that CO bond breaking is easier than CC bond breaking due to a lower activation energy and a higher released energy. During the 6 levoglucosan dehydration pathways, one water molecule which composed of a hydrogen atom from C3 and a hydroxyl group from C2 is the preferred pathway due to a lower activation energy and higher product stability.     

DFT study of the IR and Raman spectra of a fluorescent dendron built from cyclotriphosphazene core

Combined experimental and theoretical studies on molecular structure of the zero generation dendron, built from the hexafunctional cyclotriphosphazene core, with five OC₆H₄(CH₂)₂NHSO₂C₁₀H₆N(CH₃)₂ terminal groups and one oxybenzaldehyde group G₀ are reported. The Fourier transform Raman and IR spectra of G₀ have been recorded. Conformations of low energy isomers of G₀ have been studied at quantum-chemical level. The optimized geometry has been calculated by density functional (DFT) method at the PBE/TZ2P level of theory. The theoretical geometrical parameters, harmonic vibrational frequencies, IR intensities and Raman scattering activities are predicted in a good agreement with the experimental data. It was found that dendron molecule G₀ has a concave lens structure with planar OC₆H₄CHO fragments and slightly non-planar cyclotriphosphazene core. Relying on DFT calculations the bands of the core and terminal groups were assigned. The frequencies of ν(NH) bands in the IR spectrum reveal the presence of the H-bonds in the dendron.     

Cyanate ester resin/graphene nanocomposite: Curing dynamics and network formation

The curing dynamics and network formation of cyanate ester resin/graphene oxide (GO) nanocomposites were studied by means of Differential Scanning Calorimetry (DSC), Fourier Transform Infrared (FT-IR) and Raman spectroscopies. The incorporation of GO into the resin showed a strong catalytic effect on the cure of the resin, especially in the initial stages. Addition of 4 wt.% GO resulted in the decrease of curing temperature significantly about 97 °C. Activation energy of the nanocomposites also maintained at a low level till the end of the cure. The most effective catalytic behavior was observed with 1 wt.% GO. Both FT-IR and Raman spectra revealed that OH group in GO reacted with cyanate group OCN in the resin to form O(CNH)O bond in the early stages of the cure. These results could provide a low temperature curing route for cyanate ester resins with improved curing efficiency.     

Rh（Ⅱ） carbene S-H insertion into H2S via the stepwise mechanism

The mechanism of Rh(Ⅱ)carbene S-H insertion into H_2S in gas phase has been studied by B3LYP functional.Calculation results showed that the Rh(Ⅱ)carbene S-H insertion into H_2S took only stepwise channels and no concerted channels had been located, which was different from the Rh(Ⅱ)carbene C-H and O-H insertions.     

Dynamic behavior of polymer films in the presence of plasticizers by using ATR-based dynamic compression modulation step-scan Fourier transform infrared spectroscopy,and 2D correlation analysis

Attenuated total reflection (ATR)-based dynamic compression modulation two-dimensional (2D) correlation study of iso-phthalate based polyester (PES) films in the presence or absence of triphenyl phosphate (TPP) is carried out. In the PES without TPP, the dynamic response of side-chain (CO) groups is faster than that of the backbone (CCO) stretching, which is similar to the sequential result of our previous paper. With 15% TPP, the response of the backbone (CCO stretching) bands become faster than the side-chain (CO stretching) bands. In the case of 35% TPP, although slight differences are found, almost all of the observed peaks become synchronized with each other. The dynamic response feature is dramatically altered in the 45% TPP, suggesting that a transition point of larger molecular environment changes may exist between 35% and 45%. A model is proposed to explain these dynamic response features.     

Theoretical calculations of the substituent effect on molecular properties of the RCN⋯HF hydrogen-bonded complexes with R = NH2, CH3O,CH3, OH,SH, H,Cl, F,CF3, CN and NO2

DFT calculations with B3LYP and PBE1PBE functionals and 6–311++G(d,p) basis set have been performed in order to obtain molecular geometries, binding energies and vibrational properties of the RCN?HF H-bonded complexes with R = NH₂, CH₃O, CH₃, OH, SH, H, Cl, F, CF₃, CN and NO₂. As expected, it has been verified as a red-shift of the HF stretching frequency (ν_HF), in conformity with the elongation of the bond after complexation. On the other hand, the CN stretching frequency (ν_CN) is blue-shifted and corresponds to a shortening of the bond. The binding energies (ΔE_c), including BSSE and ZPVE corrections, show a linear correlation with several structural, electronic and vibrational properties. In particular, an important linear dependence between the binding energy and the calculated dipole moment of the free RCN molecule (μ_RCN) has been found. This result suggests that μ_RCN can be a useful quantity in order to predict the ability of this fragment to form a hydrogen-bond. The IR intensities of stretching and bending modes of complexed HF acid fragment are adequately interpreted through the atomic polar tensor of the hydrogen atom in HF using the modified CCFO model for infrared intensities. The new vibrational modes arising from complexation show several interesting features.     

Nitrogen- and oxygen-bridged bidentate phosphaalkene ligands

An overview is given on synthesis and structures of new bidentate phosphaalkene ligands [(RMe₂Si)₂CP]₂E (E = O, NR, N^?) and (RMe₂Si)₂CPN(R′)PR′′₂. Exceptional properties of these ligands, extending beyond predictable properties of phosphaalkenes are: (i) the NSi bond cleavage of [(iPrMe₂Si)₂CP]₂NSiMe₃ with Au^I and Rh^I chloro complexes under mild conditions leading to binuclear complexes of the 6π-delocalised imidobisphosphaalkene anion [(iPrMe₂Si)₂CP]₂N^?, and (ii) the chlorotropic formation of molecular 1:2 Pd^II and Pt^II metallochloroylid complexes with novel ylid-type ligands [(RMe₂Si)₂CP(Cl)N(R)PR₂]^?, and the transformation of a P-platina-P-chloroylid complex into a C-platina phosphaalkene by intramolecular chlorosilane elimination. Properties of the heavier congeners [(RMe₂Si)₂CP]₂E (E = S, Se, Te, PR, P^?, As^?) and (RMe₂Si)₂CPEPR′′₂ (E = S, Se, Te) are also described.     

The Raman spectra of serine and 3,3-dideutero-serine in aqueous solution

The Raman spectra of serine [α-amino-β-hydroxypropionic acid; HOCH₂CH(NH₃)⁺COO⁻] and 3,3-dideutero-serine [HOCD₂CH(NH₃)⁺COO⁻] in aqueous solution were studied in the range 4000–300 cm⁻¹. The data obtained for the deuterated compound are novel and provide compelling evidence that previously reported assignments for the undeuterated amino acid should be revised.     

Construction of indoloquinolinones via Pd(II)-catalyzed tandem CC/CN bond formation: application to the total synthesis of isocryptolepine

Construction of indoloquinolinone skeleton via Pd-catalyzed tandem CC/CN bond formation has been achieved in moderate to good yields. The method was applied toward the total synthesis of the bioactive natural product isocryptolepine in good overall yields.     

Raman bandshape analysis and DFT study of CO and CH stretching modes of NN-Dibutyl formamide in DMSO solvent`

The study reports the inter-molecular interactions and dynamics of CO and CH stretching modes of NN- Dibutyl Formamide (DBF) in DMSO solvent using Raman spectroscopic technique. The Raman band of CO and CH stretching modes have been deconvoluted into two distinct bands for neat as well as in DMSO solvent. Peak wavenumbers of CO stretching modes show red shift while CH stretching modes shows blue shift with the increase in solvent concentrations. The optimized geometric parameters, vibrational wavenumbers, Mulliken atomic charges and natural bond orbitals of the molecule has been computed using Density Functional Theory (DFT) method with basis set 6-31 +G (d, p). In addition, the same basis set has been carried out with counterpoise keyword accounting BSSE calculation on monomer and dimer states with DMSO solvent to present an appropriate interacting environment. IEF-PCM solvation model has also been computed using the same basis set and compares the geometrical parameters and vibrational wavenumbers of the molecules and in their complexes. In order to get a complete study of the DBF + DMSO complexes, explicit solvation model has also been calculated for Monomer DBF in two solvent molecules. Theoretical calculations of frequencies have been compared with the experimental findings and the results are found in good agreement.     

Absolute configuration of Buagafuran:An experimental and theoretical electronic circular dichroism study

Buagafuran is a novel drug candidate derived from natural product.Its absolute configuration has been confirmed by electronic circular dichroism combined with modern quantum-chemical calculation using time-dependent density functional theory.The predicted UV absorbance peak is underestimated by several nanometers compared with the experimental data.The applicability of empirical rule for the C=C-C-O system in Buagafuran has also been discussed.Our results show that electronic circular dichroism could be a useful tool for the absolute configuration assignment of chiral drugs,especially for the oily or semisolid substances,whose crystal structures are impossible to obtain.     

Continous gradient temperature Raman Spectroscopy identifies flexible sites in proline and alanine peptides

Continuous gradient temperature Raman spectroscopy (GTRS) applies the temperature gradients utilized in differential scanning calorimetry (DSC) to Raman spectroscopy, providing a straightforward technique to identify molecular rearrangements that occur near phase transitions. Herein we apply GTRS and DSC to the solid dipeptides Ala-Pro, Pro-Ala, and the mixture Ala-Pro/Pro-Ala 2:1. A simple change in residue order resulted in dramatic changes in thermal stability and properties. Characteristic Pro vibrations were observed at ∼75 °C higher temperature in Pro-Ala than Ala-Pro. The appearance/disappearance of characteristic vibrational modes with increasing temperature showed that a double peak in the Ala-Pro major phase transition (174–184 °C) was due to a gauche to anti 165° rotation of H₃CC*NH₃ about C*. CH₂ rocking and wagging frequencies present in Pro-Ala were not observed in Ala-Pro. For Ala-Pro, the Ala ⁺NH_3, and Pro COO⁻ sites were flexible whereas the Pro ring moiety was not; since the OCN (C)₂ amide bond is planar the CNC moiety keeps the Pro ring rigid. For Pro-Ala, CH₂ sites in the Pro ring were flexible and the OCNH amide bond is perpendicular to the Pro ring. Since the mass of the Pro ring is significantly larger than the mass of the flexible Ala ⁺NH₃ moiety, Pro-Ala absorbs more thermal energy, corresponding to a higher phase transition temperature (240–260 °C). Ala-Pro, Pro-Ala, and Ala-Pro/Pro-Ala 2:1 exhibited α-helix, β-sheet, α-helix secondary structure conformations, respectively.     

Two-dimensional correlation infrared spectroscopy studies on the thermal-induced mesophase of 4-nitrobenzohydrazide derivative

Two-dimensional (2D) correlation infrared (IR) spectroscopy has been applied to explore the effect of hydrogen bondings (HBs) on the structure of mesophase in the dissymmetrical 4-nitrobenzohydrazide derivative, N-(4-cetyloxybenzoyl)-N′-(4′-nitrobenzoyl) hydrazine (C16-NO₂). The strength and species of HBs as well as the heat-induced structural variations in mesophase have been investigated. It has been found from 2D correlation IR spectroscopy that the sequential order of changes in the different functionalities in the course of liquid crystalline formation is that, firstly, the alkyl chain changes from the significant population of the trans conformation to the significant population of gauche conformation; then, the intermolecular HB between CO and NH groups is weakened, some even being broken, and consequently, the intermolecular distance is enlarged; finally, the skeleton of phenyl ring has enough space to change their conformation to weaken the π–π stacking interaction. In addition, besides a few free and some medium bonded NH and CO groups, strongly bonded NH and CO groups still predominantly exist in the mesophase.     

Vibrational spectra of fluorene, 1-methylfluorene and 1,8-dimethylfluorene

In this paper, we report the gas phase infrared spectra of fluorene and its methylated derivatives using a heated multipass cell and argon as a carrier gas. The observed spectra in the 4000–400 cm⁻¹ range have been fitted using the modified scaled quantum mechanical force field (SQMFF) calculation with the 6-311G** basis. The advantage of using the modified SQMFF method is that it scales the force constants to find the best fit to the observed spectral lines by minimizing the fitting error. In this way we are able to assign all the observed fundamental bands in the spectra. With consecutive methyl substitutions two sets of bands are found to shift in a systematic way. The set of four aromatic CH stretching vibrations around 3000 cm⁻¹ shifts toward lower frequencies while the single most intense aromatic CH out-of-plane bending mode around 750 cm⁻¹ shifts toward higher frequencies. The reason for shifting of aromatic CH stretching frequency toward lower wave numbers with gradual methyl substitution has been attributed to the lengthening of the CH bonds due to the +I effect of the methyl groups to the ring current as revealed from the calculations. While the unexpected shifting of the aromatic CH out-of-plane bend toward higher wave numbers with increasing methyl substitution is ascribed to the lowering of the number of adjacent aromatic CH bonds on the plane of the benzene ring with gradual methyl substitutions.     

Probing the chemical reactivity of interfaces: Investigation on the interaction of dehydroindigo with Laponite by UV–vis,Raman and infrared spectroscopy

In this work, the interaction between dehydroindigo (an intermediary oxidized form of indigo) and Laponite clay was investigated. Dehydroindigo (DHI) has been detected when indigo is adsorbed by clay minerals, but it is relatively unstable and in the presence of water it turns back into indigo. It is, therefore, important to understand the factors that extend its stability and Laponite was chosen because the small aspect ratio implies in a large amount of silanol groups (SiOH) which would thus favor the DHI interaction through hydrogen bonding.A significant bathochromic shift (65 nm) of the DHI π®π* transition band in the visible region and changes in the relative intensities and position of the Raman bands at 1530, 1378 and 1167 cm⁻¹ assigned to ν(NCCN), δ(CN) and ν(CN) respectively, indicate that the interaction is stronger than expected for the van der Waals and polarization forces involved in the external surfaces interactions with the siloxane groups. It was also observed that DHI presents an enhanced photochemical stability when interacting with Laponite. These results indicate that hydrogen bonding between a DHI nitrogen atom and the −SiOH or MOH groups is mainly responsible for the behavior present in the DHI + Lap system.     

The structure and two-dimensional correlation infrared spectroscopy study of a new 2D polyoxomolybdate complex containing β-octamolybdate linked up by potassium ions: (4,4′-Hbpy)2(K2Mo8O26)

A novel compound, (4,4′-Hbpy)₂(K₂Mo₈O₂₆) 1 (bpy = bipydine), was synthesized by hydrothermal method and characterized by X-ray single analysis, thermalgravimetric analysis, one-dimensional (1D) infrared spectroscopy and two-dimensional (2D) correlation infrared spectroscopy under thermal perturbation. In the compound 1, the [Mo₈O₂₆] units link to potassium ions to form layer structure, and the protonated 4,4′-bpy are linked to chains by hydrogen bonds. The 2D IR correlation spectroscopy study indicates that the intensity changes of MoO, NH and CC stretching vibration are sensitive to the temperature variation, and the intensity changes of asymmetry stretching vibration of the terminal MoO occur prior to that of terminal MoO linked by K atom. At the same time, the peaks of asymmetry stretching vibrations of the terminal MoO and the stretching vibrations of NH split into two peaks respectively in 2D IR correlation spectroscopy.