Quantitative detection of Plesiomonas shigelloides in clam and oyster tissue by PCR

A quantitative assay for Plesiomonas shigelloides in clams and oysters based on the conventional polymerase chain reaction was developed. The assay involved the treatment of homogenized tissue samples with 4.0% formaldehyde that presumably denatured DNases and proteases present in the tissue which would otherwise inactivate the PCR reaction. The level of detection of P. shigelloides in clam tissue without enrichment was 200 CFU/g. The addition of 0.1% bovine serum albumin (BSA) to PCR reactions or the DNA purification system reduced the level of detection to 60 CFU/g. Formaldehyde had no effect on the level of detection with clam tissue. The level of detection of P. shigelloides in oyster tissue without enrichment was 6x10(5) CFU/g. The addition of 4.0% formaldehyde to oyster tissue homogenates reduced the level of detection to 6x10(2) CFU/g in contrast to the addition of 0.1% BSA to PCR reactions or the DNA purification system which reduced the level of detection to only 2x10(5) CFU/g. The combination of formaldehyde plus BSA, formaldehyde plus DNA purification, or formaldehyde plus BSA plus DNA purification all gave a detection level of 2x10(2) CFU/g of oyster tissue. With clam tissue, the linear range for detection of P. shigelloides was 60 to 2x10(4) CFU/g. With oyster tissue, the linear range for detection of P. shigelloides was 2x10(2) to 6x10(4 )CFU/g.     

Quantification of Plesiomonas shigelloides in Pure Culture and Clams by Competitive PCR

A quantitative assay for Plesiomonas shigelloides in pure culture and clams based on the competitive polymerase chain reaction was developed. This is the first report for quantitative detection of P. shigelloides by competitive PCR. Forward (PS-F), reverse (PS23RV3), and hybrid primers were designed, and the specificity of the forward and reverse primer for P. shigelloides was proven. An internal standard DNA sequence was synthesized by PCR, with the hybrid primer as the forward primers and PS23RV3 as the reverse primer. A single concentration (0.588 pg/PCR) of internal standard (IS) was used for competitive PCR. The lowest level of detection of P. shigelloides was 80 CFU per PCR in pure culture, 240 CFU/g of clam tissue without enrichment, and 40 CFU/g of clam tissue after 7 hrs. nonselective enrichment at 37°C. There was a linear relationship between the log of the ratio of the relative fluorescent intensities of amplified target DNA bands to the internal standard DNA bands (IS) and the log of the CFU within a certain range in pure cultures and in clam tissue either with or without enrichment. The linear range with cells from a pure culture was the DNA derived from 8.0 × 10¹ to 8.0 × 10⁴ CFU per PCR while with clam tissue, the linear range was the DNA derived from 2.4 × 10² to 2.4 × 10⁵ CFU/g of tissue (1.2 × 10¹ to 1.2 × 10⁴ CFU per PCR) without enrichment, and 4.0 × 10¹ to 1.2 × 10⁴ CFU/g of clam tissue with enrichment, respectively.     

Quantification of Plesiomonas shigelloides in Pure Culture and Clams by Competitive PCR

A quantitative assay for Plesiomonas shigelloides in pure culture and clams based on the competitive polymerase chain reaction was developed. This is the first report for quantitative detection of P. shigelloides by competitive PCR. Forward (PS-F), reverse (PS23RV3), and hybrid primers were designed, and the specificity of the forward and reverse primer for P. shigelloides was proven. An internal standard DNA sequence was synthesized by PCR, with the hybrid primer as the forward primers and PS23RV3 as the reverse primer. A single concentration (0.588 pg/PCR) of internal standard (IS) was used for competitive PCR. The lowest level of detection of P. shigelloides was 80 CFU per PCR in pure culture, 240 CFU/g of clam tissue without enrichment, and 40 CFU/g of clam tissue after 7 hrs. nonselective enrichment at 37°C. There was a linear relationship between the log of the ratio of the relative fluorescent intensities of amplified target DNA bands to the internal standard DNA bands (IS) and the log of the CFU within a certain range in pure cultures and in clam tissue either with or without enrichment. The linear range with cells from a pure culture was the DNA derived from 8.0 × 10¹ to 8.0 × 10⁴ CFU per PCR while with clam tissue, the linear range was the DNA derived from 2.4 × 10² to 2.4 × 10⁵ CFU/g of tissue (1.2 × 10¹ to 1.2 × 10⁴ CFU per PCR) without enrichment, and 4.0 × 10¹ to 1.2 × 10⁴ CFU/g of clam tissue with enrichment, respectively.     

Innovative Methods for Removal of PCR Inhibitors for Quantitative Detection of Plesiomonas shigelloides in Oysters by Real-Time PCR

A quantitative assay for Plesiomonas shigelloides in pure culture and oysters based on the real-time polymerase chain reaction (Rti-PCR) was developed. The methodology involved the treatment of oyster tissue homogenates with formaldehyde, differential centrifugation, and treatment of samples with activated charcoal coated with Pseudomonas fluorescens. With seeded oyster tissue homogenates, without formaldehyde or coated charcoal treatments, the lowest level of detection for P. shigelloides was 1 × 10⁷ genomic targets per gram of tissue, equivalent to 2.5 × 10⁵ genomic targets per Rti-PCR. The addition of 4% formaldehyde to tissue homogenates reduced the minimum level of detection of P. shigelloides to 1 × 10⁵ genomic targets per gram of tissue, equivalent to 2.5 × 10³ genomic targets per real-time PCR. The treatment of tissue homogenates with only activated charcoal coated with P. fluorescens reduced the minimum level of detection of P. shigelloides to 1 × 10⁴ genomic targets per gram, equivalent to 2.5 × 10² genomic targets per real-time PCR, without DNA purification or enrichment. The combination of adding 4.0% formaldehyde to oyster tissue homogenates and treating with coated charcoal reduced the level of detection of P. shigelloides to 1 × 10³ genomic targets per gram, equivalent to 25 genomic targets per real-time PCR. The linear range of detection was from 1 × 10³ to 1 × 10⁶ genomic targets per gram without enrichment.     

海产品中副溶血性弧菌免疫磁分离和环介导等温扩增快速检测方法的建立

采用纳米免疫磁珠分离副溶血性弧菌,建立副溶血性弧菌环介导等温扩增检测方法。方法 采用副溶血性弧菌单克隆抗体,制备纳米免疫磁珠,特异性吸附副溶血性弧菌,结合环介导等温扩增技术,建立副溶血性弧菌快速检测方法。结果 副溶血性弧菌纳米免疫磁珠在菌体浓度为10³cfu/ml水平时,对副溶血性弧菌的捕获率达到74%。免疫磁分离结合环介导等温扩增技术,在纯培养、无需增菌情况下,检测灵敏度达到140cfu/ml增菌液;通过对134株副溶血性弧菌和74株非目标菌的测试,环介导等温扩增技术具有良好的特异性;食品基质添加试验中,在增菌时间缩短至8h的条件下,其检测限为2cfu/25g样品。结论 副溶血性弧菌免疫纳米磁珠结合环介导等温扩增技术,有效缩短了增菌时间,适用于副溶血性弧菌的快速检测。     

Innovative Methods for Removal of PCR Inhibitors for Quantitative Detection of Plesiomonas shigelloides in Oysters by Real-Time PCR

A quantitative assay for Plesiomonas shigelloides in pure culture and oysters based on the real-time polymerase chain reaction (Rti-PCR) was developed. The methodology involved the treatment of oyster tissue homogenates with formaldehyde, differential centrifugation, and treatment of samples with activated charcoal coated with Pseudomonas fluorescens. With seeded oyster tissue homogenates, without formaldehyde or coated charcoal treatments, the lowest level of detection for P. shigelloides was 1?×?10⁷ genomic targets per gram of tissue, equivalent to 2.5?×?10⁵ genomic targets per Rti-PCR. The addition of 4% formaldehyde to tissue homogenates reduced the minimum level of detection of P. shigelloides to 1?×?10⁵ genomic targets per gram of tissue, equivalent to 2.5?×?10³ genomic targets per real-time PCR. The treatment of tissue homogenates with only activated charcoal coated with P. fluorescens reduced the minimum level of detection of P. shigelloides to 1?×?10⁴ genomic targets per gram, equivalent to 2.5?×?10² genomic targets per real-time PCR, without DNA purification or enrichment. The combination of adding 4.0% formaldehyde to oyster tissue homogenates and treating with coated charcoal reduced the level of detection of P. shigelloides to 1?×?10³ genomic targets per gram, equivalent to 25 genomic targets per real-time PCR. The linear range of detection was from 1?×?10³ to 1?×?10⁶ genomic targets per gram without enrichment.     

The development of a combined surface adhesion and polymerase chain reaction technique in the rapid detection of Listeria monocytogenes in meat and poultry.

A procedure combining enrichment surface adhesion and polymerase chain detection (SA-PCR) was developed and applied in the detection of Listeria monocytogenes in meat products. Minced beef samples were inoculated with L. monocytogenes (log(10)3 cfu g(-1)) and incubated for 10 h at 30 degrees C in buffered peptone water. L. monocytogenes was recovered from the culture by attachment to a polycarbonate membrane immersed for 15 min in the enriched meat culture. The membrane and attached bacteria were removed from the culture and the membrane dissolved in phenol:chloroform. The DNA was extracted from the bacteria and a PCR assay was carried out using primers directed against the listerolysin O gene of L. monocytogenes. The combined (SA-PCR) technique had a detection limit of log10 4.0 cfu ml(-1) in enriched meat cultures.The rapid technique was applied to a small number of retail samples (n = 100) and was found to compare favourably to the standard cultural method. A total of 12 samples were confirmed positive for L. monocytogenes using the standard cultural method and the SA-PCR assay. No false positives or negatives were recorded by either method.     

Detection, quantification and vitality of Listeria monocytogenes in food as determined by quantitative PCR

In this paper we describe the development of a quantitative PCR (qPCR) technique to detect, quantify and determine the vitality of Listeria monocytogenes in foods. The method was based on the amplification of the intergenic region spacer (IGS) between the 16S and 23S rRNA genes. A panel of more than 100 strains of Listeria spp. and non-Listeria was used in order to verify the specificity of the primers and Taqman probe and amplification signals were obtained only when L. monocytogenes DNA and RNA were loaded in the qPCR mix. Standard curves were constructed in several food matrices (milk, meat, soft cheese, fermented sausage, cured ham and ready-to-eat salad). The quantification limit was of 10(3)-10(4) cfu/g or ml, while for the determination of vitality it was 10(4)-10(5) cfu/g or ml. After an overnight enrichment in BHI at 37 degrees C also 10 cfu/g or ml could be detected in all the matrices used in this study. When we applied the protocol to food samples collected from the market or from small food processing plants, on a total number of 66 samples, 4 fresh cheeses from raw milk gave positive results prior to the overnight incubation, while 9 samples, of which only one represented by fresh meat and the others by cheeses from raw milk, were positive after the enrichment. Out of the 4 positive samples, only one could be quantified and it was determined to contain 4x10(3) cfu/g.     

Development of an immobilization and detection method of Enterobacter sakazakii from powdered infant formula

Enterobacter sakazakii is an emerging opportunistic pathogen that is associated with rare but life-threatening cases of meningitis, necrotizing enterocolitis, and sepsis in premature and full-term infants. In the present study, a procedure was developed for immobilization of E. sakazakii with zirconium hydroxide coupled with detection by a species-specific duplex PCR, based on 16s-23s rDNA internal transcribed spacer (ITS) and ompA gene. Specificity of duplex PCR was tested against two-type strains, six isolates of E. sakazakii and other eight non-E. sakazakii species. When pure culture of E. sakazakii was used for immobilization, total recovery rate ranged from 79.4% to 99.6% of input bacteria, and the detection limit of duplex PCR was 3x10(5)CFU/ml. Different levels of E. sakazakii were inoculated into 90ml reconstituted powdered infant formula (PIF), and detection limit of duplex PCR was 3x10(0)CFU/ml with 24-30h enrichment after immobilization. When the experiment was performed in the presence of 10(2)CFU/ml Salmonella typhimurium, the detection limit of duplex PCR was not affected after enrichment. Seven out of 13 commercial PIF were detected positive by duplex PCR after immobilization, while only three were positive by biological methods. This study demonstrates that the combination of immobilization method with duplex PCR is easy, rapid, and efficient, and may have applications for the detection of E. sakazakii in more PIF samples.     

Detection of Vibrio vulnificus Before and After γ-irradiation in Quahog Clam (Mercenaria mercenaria) Tissue Using Real-Time Polymerase Chain Reaction

The effects of γ?–irradiation on the destruction of Vibrio vulnificus in quahog clam tissue (Mercenaria mercenaria) by real-time PCR (Rti-PCR) were studied. The Rti-PCR methodology used in this study employed four sets of V. vulnificus specific primers, which were utilized to amplify 1000, 700, 300, and 70-bp sequences of the vvhA to determine the percent detection of V. vulnificus genomic targets after γ?–irradiation. Tissue homogenates seeded with V. vulnificus were irradiated to gradually reduce the viable CFU by accumulating dosage. The use of these four pairs of primers to amplify DNA target sequences of varying length in seeded tissue exposed to 1.4 KGy failed to discriminate between irradiated and nonirradiated cells. In contrast, with doses of 2.0, 3.0, and 5.0 KGy, the amplification of 700, 300, and 70-bp sequences resulted in higher Ct values, respectively, and lower levels of amplification with each primer pair, reflecting increased DNA fracture with increasing dose. When varying numbers of CFU in tissue homogenates (1.0 × 10³ to 1.0 × 10⁶ per gram of tissue) were exposed to 3.0 KGy of γ-irradiation, DNA amplicons of 1000 and 700-bp derived from 1 × 10⁵ CFU/g and below failed to be detected in contrast to 300 and 70-bp amplicons, which were detected with CFU levels of 1.0 × 10⁵/g. This study showed that with increasing dose, the larger amplicons (100 and 700-bp) failed to be detected, which corresponded to zero percent survival of CFU.     

Application of whole genome amplification and quantitative PCR for detection and quantification of spoilage yeasts in orange juice

Small cell numbers in complex food matrices and undefined PCR inhibitors often limit detection and identification of DNA species by molecular techniques. Thus in many industrial situations enrichment growths are performed. However, growth speed of different species in complex microbial mixtures in defined media is in most cases different, thus final results do not always reflect the starting situation. We tested DNA-strand displacement whole genome amplification as a possible substitute of enrichment growth. Using whole genome amplification on orange juice contaminated with Saccharomyces cerevisiae, we lowered detection level from 10(6) down to 10(2) cfu/ml. Whole genome amplification showed to be linear (R=0.992) and the relative yeast DNA copy number compared to other DNA templates did not change thus allowing quantitative estimation of initial contamination by quantitative PCR. Using melting point analysis, we were able to distinguish between the PCR products of the 5.8S-ITS region, obtained with universal primers from pure cultures of S. cerevisiae and Hanseniaspora uvarum, two major spoilage yeasts in orange juice and forming part of wine microbiota during fermentation. However, in mixed-contaminated samples, identification of both species was hampered by preferential appearance of the melting peak coinciding with H. uvarum, except when S. cerevisiae was the dominating species. Application of whole genome amplification did not prevent the preferential detection of H. uvarum. This handicap was resolved by applying an enrichment procedure up to saturation after which the melting peak of both species could clearly be identified.     

Combined PCR and slot blot assay for detection of Salmonella and Listeria monocytogenes

Detection of Salmonella typhimurium and Listeria monocytogenes by the polymerase chain reaction (PCR) assay coupled with slot blot detection was investigated in this study. After being extracted from diluted bacterial culture with the extraction buffer, bacterial DNA was subjected to PCR. The slot blot assay was optimized and used to detect PCR products. The lowest detection level of this method was 10(3) cfu/ml in the original culture media for both pathogens, or 5 bacterial cells in the PCR reaction. Combined with immunomagnetic separation (IMS) to separate and concentrate bacteria from samples, the detection limit could be 40 cfu/ml of bacteria from milk samples. The whole detection procedure was completed within 7 h. After multiplex PCR (amplification of DNA from two different bacteria in the same PCR tube) and slot blot, a detection level of 10(3) cfu/ml was achieved in the simultaneous detection for both pathogens, which was similar to that of individual detection for each pathogen. The combination of PCR and slot-blot seems to be highly sensitive and time-efficient, and is therefore promising for routine use in the detection of Salmonella and L. monocytogenes in food samples such as milk.     

CONCURRENT DETECTION OF ESCHERICHIA COLI O157:H7 AND SALMONELLA FROM A SINGLE ENRICHMENT IN 24 H

The objective of this study was to determine if a single assay protocol could result in the concurrent detection of Escherichia coli O157:H7 and Salmonella from a single sample grown in a single enrichment in 24 h. Twenty-five and 375 g of ground beef nonfat dry milk, and dry pet food samples were seeded with low (10 cfu/sample) and high (100 cfu/sample) levels ofE. coli O157:H7 and Salmonella cultures and incubated at 35 and 41C for 18 h for nonselective preenrichment. Incubated samples were analyzed by immunomagnetic separation (IMS) following a 6 h incubation for selective enrichment at 37C using M-broth and enzyme linked immumosorbent assay (ELISA). Depending on the food samples and the inoculation level, the minimum concurrent detection level of E. coli O157:H7 and Salmonella was <1 cfu/g in the samples at the competitor flora level of 10⁵ cfu/g or less in ground beef samples, but in other cases of higher competitor loads and low target inoculations E. coli O157:H7 could not be detected in the presence of the Salmonella.     

Quantitative Detection ofVibrio vulnificus in Shellfish by Competitive Polymerase Chain Reaction

Quantitative detection of V. vulnificus in shellfish via competitive PCR was herein developed. We designed a forward primer, a reverse primer and a hybrid forward primer based on the V. vulnificus specific hemolysin gene (vvh), which was used to amplify target DNA and an internal competitive PCR standard. The specificity of the primers for V. vulnificus was proven by gel electrophoresis. The detection sensitivity for V. vulnificus was 220 CFU per PCR reaction with cells from a pure culture and 270 CFU/g of tissue without enrichment. After 10 hours of enrichment at 37° C the minimum detection level was reduced to 7 CFU/g of tissue.     

Microbiological analysis and starter culture growth in retentates.

Pasteurized skim milk was concentrated by UF to 2-, 4-, and 5-fold. The retentates were evaluated for microbiological quality, heat treatments to inactivate microorganisms, and lactic acid bacterial starter culture activity. Aerobic mesophilic bacterial counts in raw milk decreased from an initial 1.4 x 10(6) to 3.9 x 10(2) cfu/ml after pasteurization. During UF, counts increased from 3.9 x 10(2) cfu/ml UF, counts increased from 3.9 x 10(2) cfu/ml in pasteurized milk to 1.4 x 10(3), 1.4 x 10(4), and 1.8 x 10(4) cfu/ml in 2-, 4- and 5-fold retentates, respectively. Psychrotrophic bacterial counts decreased from 9.9 x 10(5) cfu/ml in raw milk to 3.7 x 10(1) cfu/ml in pasteurized milk and gradually increased to 1.0 x 10(2), 2.5 x 10(2), and 1.4 x 10(3) cfu/ml in 2-, 4-, and 5-fold retentates, respectively. Thermophilic bacterial counts remained less than 10 cfu/ml in all samples. Skim milk and retentates inoculated with five starter cultures at 1% failed to decrease the pH below 4.6 in (2-, 4- and 5-fold). The 4- and 5-fold retentates inoculated with Lactococcus lactis spp. cremoris or Lactococcus lactis spp. lactis cultures were partially coagulated with pH greater than 5.6. In general, the pH of retentates remained higher than that of skim milk. Clotting of uninoculated samples was observed, and a spore-forming contaminant, tentatively characterized as Bacillus cereus and capable of clotting milk at a pH greater than 6, was isolated from the clotted samples.(ABSTRACT TRUNCATED AT 250 WORDS)     

Development of an isothermal amplification-based assay for the rapid visual detection of Salmonella bacteria

The efficient and timely detection of pathogens is a major concern worldwide. The aim of this study was to establish a rapid detection method for Salmonella bacteria in food samples to facilitate timely treatment. Widely used detection methods currently include culture-based methods and PCR-based methods. The former are time consuming, requiring 2 to 3 d, whereas the latter have higher accuracy but are typically complicated, requiring expertise and expensive instruments. In this study, a sensitive and rapid approach for the visual and point-of-use detection of Salmonella bacteria based on recombinase polymerase amplification (RPA) and a lateral-flow (LF) nucleic acid strip was established. We designed a pair of primers according to the invA gene of Salmonella bacteria: one was modified with digoxin, and the other was modified with biotin. In the presence of the biotin- and digoxin-modified primers and target DNA, the RPA produced a substantial amount of duplex DNA attached to biotin and digoxin. The products were detected using LF strips through immunoreaction: anti-digoxin antibodies on the gold nanoparticles, digoxin on the duplex, streptavidin on the LF test line, and biotin on the duplex. The developed RPA-LF assay allowed detection of Salmonella genomic DNA in less than 20 min with simple water bath equipment or portable thermal equipment. In addition, the RPA-LF assay was highly sensitive, with a detection limit as low as 20 fg of target DNA or 1.05 × 10¹ cfu of bacteria in pure culture, and highly specific, exhibiting no cross-reaction with Staphylococcus aureus, Escherichia coli, Listeria monocytogenes, Shigella, Enterobacter aerogenes, or Campylobacter jejuni. Importantly, Salmonella could be detected in milk and chicken breast at concentrations as low as 1.05 × 10⁰ cfu/mL or 1.05 × 10⁰ cfu/g after enrichment for 2 h and in eggs at 1.05 × 10⁰ cfu/g after enrichment for 4 h. Furthermore, RPA was more sensitive than PCR, which requires a thermal cycling device. In summary, this study describes a sensitive, simple, and point-of-use detection method for Salmonella bacteria.     

A case of sporadic ovine mastitis caused by Listeria monocytogenes and its effect on contamination of raw milk and raw-milk cheeses produced in the on-farm dairy

We describe a case of listerial mastitis in a flock of 130 sheep. The animals were housed at a farm where the bulk raw ewe milk was processed to produce raw milk soft cheese. List. monocytogenes was shed from the right mammary complex. Shedding was observed over a period of 99 d. A mean level of 4-56 x 10(4) cfu (colony forming units) Listeria monocytogenes/ml was recovered from the raw milk originating from the infected udder. The numbers ranged from 9 x10(1) to 2.95 x 10(5). The bulk milk was contaminated by approx. 5.7 x 10(3) cfu/ml. In the cheese product, 2.0 x 10(2) cfu List. monocytogenes/g were constantly detectable for a period of 7 d post manufacture. The starter culture used for coagulation had a pivotal influence on the behaviour of List. monocytogenes during cheesemaking. Using the same mesophilic buttermilk culture as used by the farmer allowed numbers of Listeria to increase 60-fold within 12 h owing to a delayed acidification of the bulk milk. Addition of a thermophilic yogurt culture reduced the numbers of Listeria within 8 h of incubation.     

The use of immuno-magnetic separation (IMS) as a tool in a sample preparation method for direct detection of L. monocytogenes in cheese

A sample preparation procedure was developed for direct detection of L. monocytogenes in cheese. The sample preparation protocol consisted of a 10-fold dilution and homogenization, a centrifugation step to precipitate large food particles, passage of the supernatant over a sieve and through a separatory funnel to further eliminate food particles and fat, a centrifugation step to recover the bacterial pellet and finally enzymatic digestion of the suspension to degrade the remaining small food particles. Recovery of L. monocytogenes was confirmed by plating on Oxford medium and confirmation of suspected colonies. This protocol enabled direct detection (without prior enrichment) of low numbers of L. monocytogenes (0.5-1.5 cfu/g cheese) from different types of cheese. The performance of Dynabeads Anti-Listeria (Dynal, Oslo, Norway) for selective recovery of L. monocytogenes and their applicability in the above mentioned procedure for direct detection of low numbers of L. monocytogenes from cheese was evaluated. IMS could not separate and recover L. monocytogenes from the food particles in the concentrated suspension. The use of IMS after a 24 h enrichment procedure (as recommended by the manufacturer) allowed for the detection of low numbers of L. monocytogenes (< 10 cfu/g). However, experiments in broth cultures showed that although the detection limit of IMS with Dynabeads Anti-Listeria was 40-100 cfu/ml, the ratio of L. monocytogenes to non-Listeria flora was not increased. Thus, selective enrichment or concentration of L. monocytogenes was not obtained.     

Upstream sample processing facilitates PCR detection of Listeria monocytogenes in mayonnaise-based ready-to-eat (RTE) salads

Sample pretreatment to reduce volume and concentrate cells of the target organism(s) prior to molecular detection offers a useful supplement or alternative to cultural enrichment. The purpose of this study was to develop an upstream processing method to facilitate the detection of Listeria monocytogenes in ready-to-eat (RTE) salads by PCR. Potato salad, a model RTE commodity, was seeded with L. monocytogenes and processed by two alternative upstream sample processing methods (designated one-step and two-step centrifugation), followed by DNA extraction, PCR amplification, and Southern hybridization. The two-step method resulted in 1,000-fold improvements in the PCR detection limit, from 10(6) Cfu/g (no sample processing) to 10(3) Cfu/g. The two-step method was applied for upstream sample processing of four representative deli salad items artificially inoculated with L. monocytogenes at levels ranging from 10(1)-10(6) Cfu/g. Following DNA extraction, PCR amplification, and Southern hybridization, detection was achieved at input levels of 10(5) Cfu/g for chicken salad, 10(4) Cfu/g for macaroni salad, and 10(3) Cfu/g for potato and seafood salads. The two-step method reported here facilitates the production of a final sample concentrate of reduced volume and improved purity which was compatible with PCR amplification. This approach offers further progress in our efforts to reduce or eliminate cultural enrichment in an effort to speed time to results when applying molecular methods to the detection of pathogens in foods.     

A simple and sensitive aptasensor with rolling circle amplification for viable Cronobacter sakazakii detection in powdered infant formula

Cronobacter sakazakii is a foodborne, emerging opportunistic pathogen that causes severe bacteremia, necrotizing enterocolitis, and sepsis with a mortality rate of up to 80%. In this study, we developed a simple and sensitive fluorescent turn-off aptasensor with rolling circle amplification assay for viable C. sakazakii detection in powdered infant formula. The results showed that the proposed aptasensor has good performance and specificity for detecting viable C. sakazakii in pure culture and powdered infant formula samples within 3 h. Under the optimal reaction conditions, there is a linear relationship between fluorescent intensity at 490 nm and logarithmic concentration of C. sakazakii in the range of 2.7 × 10⁵ to 2.7 × 10² cfu/mL, with a limit of detection of 2.7 × 10² cfu/mL in pure culture. The proposed aptasensor achieved a recovery of 104 to 111% in pure culture, and 96 to 107% in spiked powdered infant formula samples. The proposed aptasensor does not require complicated DNA extraction steps or antibodies, and can be performed at 37°C, making it a convenient and sensitive strategy for C. sakazakii detection.