Cryptic diversity of marine gastropod Monodonta labio (Trochidae): did the early Pleistocene glacial isolation and sea surface temperature gradient jointly drive diversification of sister species and/or subspecies in the Northwestern Pacific?

Formation of glacial refugia during the Pleistocene climatic oscillations has been put forward to elucidate the diversification of marine organisms in the north‐western Pacific. The marine gastropod Monodonta labio is one of the most common species in the Northwestern Pacific and possibly possesses cryptic diversity. Here, we investigate the phylogeographic pattern of this species to test the potential mechanisms driving its diversification in the Northwestern Pacific. Genetic information for two mitochondrial genes (Cytochrome oxidase subunit I and 16S rDNA) and one nuclear gene (internal transcribed spacer 1) was acquired to detect genetic structuring and to reconstruct the gastropod's phylogenetic history. Our results revealed that M. labio is comprised of five main clades, and divergence time estimates place their cladogenesis as corresponding to the initiation (c. 2.5 mya) and intensification (c. 0.9 mya) of large‐scale Northern Hemisphere ice sheets. The early and middle Pleistocene divergence times are consistent with the emergence times of the Dongshan land bridge, which would seperate the ancient East China Sea and the ancient South China Sea forming two potential refugia. In addition, the deep trough in the Qiongzhou Strait would possibly act as another potential refugium with the uplift of the Qiongzhou Strait at mid‐Pleistocene. This study suggests that the current genetic architecture of M. labio is probably correlated with glacial isolation and sea surface temperature gradient. We also put forward the possibility that these factors were probably an important driver for the diversification of sister species or subspecies of other taxa in the Northwestern Pacific.     

Ocean currents determine functional connectivity in an Antarctic deep‐sea shrimp

The coherency among larval stages of marine taxa, ocean currents and population connectivity is still subject to discussion. A common view is that organisms with pelagic larval stages have higher dispersal abilities and therefore show a relatively homogeneous population genetic structure. Contrary to this, local genetic differentiation is assumed for many benthic direct developers. Specific larval or adult migratory behavior and hydrographic effects may significantly influence distribution patterns, rather than passive drifting abilities alone. The Southern Ocean is an ideal environment to test for the effects of ocean currents on population connectivity as it is characterized by several well‐defined and strong isolating current systems. In this study we studied the genetic structure of the decapod deep‐sea shrimp Nematocarcinus lanceopes, which has planktotrophic larval stages. We analysed 194 individuals from different sample localities around the Antarctic continent using nine microsatellite markers. Consistent with a previous study based on mitochondrial DNA markers, primarily weak genetic patterns among N. lanceopes populations around the continent were found. Using ocean resistance modeling approaches we were able to show that subtle genetic differences among populations are more likely explained by ocean currents rather than by geographic distance for the Atlantic Sector of the Southern Ocean.     

Phylogeographical patterns of the gastropod Siphonaria pectinata (Linnaeus, 1758)

Siphonaria pectinata is a marine gastropod distributed across the shores of the Western and Eastern Atlantic. Although previous studies have indicated that the species could be a recent introduction to Central and North America from Western Africa and Europe, other authors have questioned this statement. In fact, a recent study has shown that individuals from both sides of the Atlantic are genetically disconnected, rejecting the idea of a recent invasion. However, genetic information on this species is very scarce and based only on a single study using a limited number of specimens and sites. The data reported in the present study represent one step forward, collecting information from 119 specimens from 22 sites that cover the entire distributional range of the species. Populations from the Western Atlantic separated from eastern ones around 1.4?1.9 Mya, whereas the centre of dispersion is located on the eastern side of the Atlantic. Siphonaria pectinata should be considered native to the Western Atlantic and cannot be considered as a species with an amphi‐atlantic distribution owing to the lack of genetic connection between both sides of the Atlantic, as previous authors have pointed out. The presence of a star‐shaped phylogeny is discussed in the context of Plio‐Pleistocene glaciations.     

Comparative phylogeography and population genetic structure of three widespread mollusc species in the Mediterranean and near Atlantic

Although several studies have evaluated the genetic structure and phylogeographic patterns in many species of marine invertebrates, a general model that applies to all of them remains elusive. For example, some species present an admixture of populations with high gene flow, whereas others exhibit more complex patterns characterized by small‐scale unstructured genetic heterogeneity, even at a local scale. These differences are thought to be due to clear biological aspects such as direct versus indirect development, or the presence of lecithotrophic versus planktotrophic larvae, but few studies compare animals with similar distributions and life modes. Here, we explore the phylogeographic and genetic structure patterns in two chiton (Chiton olivaceus and Lepidopleurus cajetanus) and one abalone (Haliotis tuberculata) species co‐occurring in the same habitat. Samples were obtained from shallow rocky bottoms along the Iberian Peninsula (Atlantic and Mediterranean coasts), Italy, Croatia and Greece, and the mitochondrial markers COI and 16S rRNA gene were sequenced. Our data show evidence of admixture and population expansion in C. olivaceus and H. tuberculata, whereas L. cajetanus exhibited a ‘chaotic patchiness’ pattern defined by a high genetic variability with locality‐exclusive haplotypes, high genetic divergence, and a lack of geographic structure. Shared haplotypes were sampled in both coasts of Iberia (for H. tuberculata) and in the Western and Eastern Mediterranean (for C. olivaceus), potentially indicating high dispersal ability and a recent expansion. The processes underlying the fine‐scale structuring in L. cajetanus remain a mystery. These results are especially interesting because the reproductive mode of the two chitons is similar but differs from that of the abalone, with a veliger larva, while instead the genetic structure of C. olivaceus and H. tuberculata are similar, thus contrasting with predictions based on the life history of the three molluscs and showing that the genetic patterns of marine species may be shaped by many factors, including historical ones.     

Genetic differentiation of the soft shore barnacle Fistulobalanus albicostatus (Cirripedia: Thoracica: Balanomorpha) in the West Pacific

This study examined the phylogeography of the barnacle Fistulobalanus albicostatus, which inhabits mangroves and estuarine shores in the West Pacific. Differentiation in the mitochondrial cytochrome c oxidase subunit I (COI) and 12S ribosomal RNA (12S) genes of 401 specimens of F. albicostatus was examined in samples from 16 locations in the West Pacific, ranging from Honshu to Southern China. Our results revealed that F. albicostatus comprises two major clades exhibiting a COI divergence ranging from 1.25% to 2.8%. Clade A demonstrated the widest distribution, ranging from Japan to China, and was divided into three subclades occurring in the South China Sea (A1), Okinawa (A2), and Honshu, Korea and Qingdao (A3). Clade B was determined to be endemic to Okinawa; i.e. two endemic lineages occur in this island. Thus, F. albicostatus resembles several inter‐tidal species in having clades that are endemic to Okinawan waters. Nevertheless, in contrast to the rocky inter‐tidal barnacles Tetraclita spp. and Chthamalus malayensis, F. albicostatus was not found to be separated into continental and oceanic populations, but instead is divided into northern and southern clades, probably because of the Yangtze River discharge, which limits gene flow between the northern and southern populations.     

Mitochondrial DNA variation reveals distinct lineages in Penaeus semisulcatus (Decapoda,Penaeidae) from the Indo‐West Pacific Ocean

Penaeus semisulcatus, the green tiger prawn, is an ecologically and economically important penaeid shrimp in the Indo‐West Pacific region, especially in rice‐shrimp farming and capture fisheries in Bangladesh and Sri Lanka, respectively. Genetic variation and phylogeography of samples of this species from Bangladesh and Sri Lanka were studied utilizing different mitochondrial DNA markers, i.e. cytochrome oxidase subunit 1 (CO1), control region (CR) and 16S rRNA genes. No evidence of population structure was observed in Bangladesh, but distinct variations were found among the Sri Lankan samples (Φ_ST = 0.04, p = .002; F_ST = 0.07, p = .001), with the western sample differing from the northwestern and southern samples. The Bangladesh population had lower genetic diversity than two of the three Sri Lanka populations. The phylogeography of P. semisulcatus revealed two distinct mitochondrial DNA (mtDNA) lineages, one in the Western Pacific Ocean and second in the Indian Ocean. The Bangladesh samples showed highest levels of similarity with samples from Sri Lanka, India and Malaysia, with the Bangladesh and Sri Lanka populations sharing the most common recent ancestry. Among the Indian Ocean samples, high levels of variation were observed in the samples from Iran, indicating admixture of two distinct mtDNA lineages, one shared by the populations from the Bay of Bengal and the other possibly originating from Eastern Africa. The genetic and phylogeographic information obtained in this study will be useful in appropriate planning for management and conservation of shrimp fisheries in Bangladesh and Sri Lanka, and in the Indo‐West Pacific region.     

Community structure and functional traits of mollusks associated with coastal reef macroalgae in Northeastern Brazil

This study investigated the community structure and functional traits of the mollusk fauna associated with macroalgae with different thallus morphologies in a reef environment in Northeastern Brazil. A total of 15 individuals of each species of macroalgae adhered to natural substrate and 15 individuals of Padina gymnospora detached from the substrate were collected. The structural complexity of algal habitats was measured and the associated malacofauna screened and identified. All three macroalgae differed significantly in the complexity of their habitat, with Sargassum polyceratium being the most complex. A total of 823 specimens of mollusks belonging to 22 species and 11 families were recorded, of which Columbellidae was the most represented with six species. The functional trait “size” revealed that micromollusks smaller than 10 millimeters were predominant in the community; however, individuals of larger sizes (up to 24.54 millimeters) belonging to young stages of other species were also present. Eight functional trophic groups were identified, of which “carnivorous” stood out with seven species. Six functional groups of microhabitats were identified, with intra‐specific variation in habitats, while habitat expansion was documented for species not yet recorded in association with macroalgae. The structure of the molluskan community differed among the three algae species with the greatest richness, abundance, and diversity of mollusks and functional traits occurring with S. polyceratium. Community structure differed between algae adhered to natural substrate and detached algae, with the latter having lower mollusk richness and diversity, but with greater abundance of some species that remained on algal fronds after release from the reef environment. This study reinforces the importance of algal habitat for marine invertebrate fauna, especially for micromollusks that spend their entire life cycle, or part of it, in association with macroalgae.     

Stability of genetic diversity in an intertidal goby population after exposure to tsunami disturbance

Massive tsunami disturbances have potentially detrimental effects on genetic diversity and effective population size of coastal marine species, and evaluating these effects can be useful for devising conservation strategies for coastal marine environments. Local populations of the intertidal goby Chaenogobius annularis, which are distributed on scattered rocky beaches of the Japanese Archipelago, show demographic independence without overlapping generations, making this an ideal species with which to study the effects of tsunami disturbance on genetic diversity. Some of these populations were affected by the tsunami of the 2011 off the Pacific coast of Tohoku Earthquake. Here, we investigated the change in genetic diversity of a local population of this species, which was located close to the epicenter of the earthquake, across the cohorts before and after the tsunami and evaluated the impact of the tsunami disturbance. Genetic diversity was maintained after the tsunami, and no change in the effective population size was observed. Our results suggest that the tsunami disturbance has had no marked impact on the genetic diversity of C. annularis.     

Life after death: shallow‐water Mediterranean invertebrate communities associated with mammal bones

Invertebrate and microbial marine communities associated with mammal bones are interesting and poorly understood habitats, mainly known from studies on deep‐water whale remains. In order to characterize these communities in the shallow‐water Mediterranean, we present here the results of a pioneering experiment using mammal bones. Minke whale, pig and cow bones were experimentally deployed on three different background communities: rocky substrate, soft‐bottom and a Posidonia oceanica meadow. Bones were deployed for a year at about 20 m depth and collected every 3 months, and the invertebrate fauna colonizing the bones was identified to the lowest possible taxonomic level. As expected, mammal bones showed remarkable differences when compared with background communities. Within bones, four different clusters could be identified, primarily on the basis of the polychaete fauna, the most abundant and diverse group in the survey. Clusters A1–A3 corresponded to high to moderately altered successional stages composed by a fauna closer to that of anthropogenically enriched shallow‐water environments. These clusters were characterized by the occurrence of the opportunist polychaetes Ophryotrocha puerilis, Neanthes caudata (Cluster A1), Protodorvillea kefersteini (Cluster A2) and Ophryotrocha alborana (Cluster A3). Cluster B was characterized by the presence of the polychaete Oxydromus pallidus together with typical invertebrate background fauna, which suggests that this community, after a year of deployment, was closer to that found in natural conditions. As opposed to similar shallow‐water studies in other geographic areas, no occurrence of the polychaete Osedax (commonly known as bone‐eating worms) was reported from our experiments. Apart from the study on the invertebrate communities, insights about the population dynamics of three of the most abundant species (O. puerilis, O. alborana, N. caudata) are given as well as remarks on a hypothetical trophic network based on fecal pellet analysis.     

West versus East Mediterranean Sea: origin and genetic differentiation of the sea cucumber Holothuria polii

We studied the genetic structure of the sea cucumber Holothuria (Roweothuria) polii (Delle Chiaje 1823) by analysing the mitochondrial DNA variation in two fragments of cytochrome oxidase I (COI) and 16S genes. Individuals were collected in seven locations along the Mediterranean Sea, which cover a wide range of the species distribution. We found high haplotype diversity for COI and moderate diversity for 16S, and low nucleotide diversity for both genes. Our results for the COI gene showed many recent and exclusive haplotypes with few mutational changes, suggesting recent or ongoing population expansion. The Western and Eastern Mediterranean populations exhibited slight but significant genetic differentiation (COI gene) with higher genetic diversity in the East. The most ancient haplotype was not present in the westernmost sampling location (SE Spain). The oldest expansion time was observed in Turkey, corresponding to mid‐Pleistocene. Turkey had also the highest genetic diversity (number of total and exclusive haplotypes, polymorphisms, haplotype and nucleotide diversity). This suggests that this region could be the origin of the subsequent colonizations through the Mediterranean Sea, a hypothesis that should be assessed with nuclear markers in future research.     

Evaluating the genetic effects of the invasive Ocenebra inornata on the native oyster drill Ocenebra erinacea

Studies focusing on the effect of invasive species on the genetic diversity of native marine invertebrates remain scant. Here we report diversity among French populations of the intertidal gastropod Ocenebra erinacea (Linnaeus, 1758) sampled in the presence and absence of the invasive Ocenebra inornata (Recluz, 1851). Between 1999 and 2004, a total of 352 individuals of O. erinacea was collected from 15 sites (five of which had the invasive present) and was genotyped at the mitochondrial locus Cytochrome Oxidase 1 (cox1). No statistical difference was observed between polymorphism levels recorded within native populations exposed to the invasive, compared with populations sampled in the absence of O. inornata. No sign of native population decline was detected in response to the invader. While significant shifts in native O. erinacea population sizes have previously been reported in the literature, genetic effects may take longer to accumulate, or may be undetectable without a larger panel of genetic markers. By contrast, large genetic distances and significant population differentiation were recorded between Atlantic and Mediterranean O. erinacea samples, suggesting that these populations have distinct evolutionary histories. Comparison of genetic divergence within the closely related genus Nucella suggests that the Atlantic populations of O. erinacea and those from Thau Lagoon in the Mediterranean may belong to different species or subspecies.     

大陆岛入海沉积物通量的估算研究

大陆岛入海沉积物通量（Q_s）信息对于精确解译大陆架沉积记录的研究是个重要补充。针对如何估算大陆岛Q_s的科学问题,本文以中国东南部海域的8 227个大陆岛为例,提出了一种基于邻近大陆中小型河流Q_s的经验公式计算大陆岛Q_s的解决方案。该方案在实施时需设置两个假定,即大陆岛的Q_s法则遵循邻近大陆中小河流的Q_s法则和可将1个大陆岛当作1个河流流域计算其Q_s。结果表明:（1）经验公式计算的大陆岛Q_s为其最小估计值;如考虑大陆岛流域的具体情况,实际的Q_s值会稍微增加,但其增幅不超过n0.13（n为流域数量）;（2）经验公式能获取大陆岛Q_s的大致数量级信息;大陆岛的总面积为4 418.49 km2,对应Q_s的数量级为106 t/a,与邻近大陆中型河流入海通量的数量级相当;（3）在大河河口湾充填阶段完成以前,大陆岛沉积物是内陆架泥质沉积体的主要物源之一。因此,大陆岛入海沉积物会对大陆架沉积体系的形成和演化造成一定程度的影响,需引起研究人员的高度重视。     

Genetic connectivity of the coral‐eating sea star Acanthaster planci during the severe outbreak of 2006–2009 in the Society Islands,French Polynesia

Occasional population outbreaks of the crown‐of‐thorns sea star, Acanthaster planci, are a major threat to coral reefs across the Indo‐Pacific. The presumed association between the serial nature of these outbreaks and the long larval dispersal phase makes it important to estimate larval dispersal; many studies have examined the population genetic structure of A. planci for this purpose using different genetic markers. However, only a few have focused on reef‐scale as well as archipelago‐scale genetic structure and none has used a combination of different genetic markers with different effective population sizes. In our study, we used both mtDNA and microsatellite loci to examine A. planci population genetic structure at multiple spatial scales (from <2 km to almost 300 km) within and among four islands of the Society Archipelago, French Polynesia. Our analysis detected no significant genetic structure based on mtDNA (global F_ST = ?0.007, P = 0.997) and low levels of genetic structure using microsatellite loci (global F_ST = 0.006, P = 0.005). We found no significant isolation by distance patterns within the study area for either genetic marker. The overall genetically homogenized pattern found in both the mitochondrial and nuclear loci of A. planci in the Society Archipelago underscores the significant role of larval dispersal that may cause secondary outbreaks, as well as possible recent colonization in this area.     

Disentangling exploitation of the intertidal grazer Phorcus sauciatus (Gastropoda: Trochidae) in an oceanic archipelago: Implications for conservation

Harvesting of intertidal grazers such as topshells is known to affect negatively the exploited populations by altering population structure and decreasing abundance. Phorcus sauciatus has a wide geographic distribution in the North‐eastern Atlantic Ocean and is subject to increasing levels of harvesting pressure due to the expansion of human population on coastal areas. The effect of proximity to human settlements and coastal accessibility on the size structure and abundance of P. sauciatus populations was examined in Madeira archipelago. Mean size, proportion of reproductive individuals, and abundance of this species were generally smaller in areas closer to human settlements and in more accessible coastal areas. Marine protected areas returned the highest mean sizes evidencing their effectiveness in preserving the size structure of this species. The results highlight the necessity to regulate the harvest of P. sauciatus in Madeira archipelago, as well as the implementation of management measures aiming at the sustainable exploitation and conservation of this species, exploited in this region since the early 15th century.     

Effects of low pCO2 conditions on sea urchin larval size

Ocean acidification results from an increase in the concentrations of atmospheric carbon dioxide (CO₂) impacts on marine calcifying species, which is predicted to become more pronounced in the future. By the end of this century, atmospheric pCO₂ levels will have doubled relative to the pre‐industrial levels of 280 ppm. However, the effects of pre‐industrial pCO₂ levels on marine organisms remain largely unknown. In this study, we investigated the effects of pre‐industrial pCO₂ conditions on the size of the pluteus larvae of sea urchins, which are known to be vulnerable to ocean acidification. The larval size of Hemicentrotus pulcherrimus significantly increased when reared at pre‐industrial pCO₂ level relative to the present one, and the size of Anthocidaris crassispina larvae decreased as the pCO₂ levels increased from the pre‐industrial level to the near future ones after 3 days' exposure. In this study, it is suggested that echinoid larvae responded to pre‐industrial pCO₂ levels. Ocean acidification may be affecting some sensitive marine calcifiers even at the present pCO₂ level.     

环境约束下优化海岛管理制度探讨

我国对海岛管理的研究主要集中在海岛管理立法研究、海岛开发利用研究与海岛生态保护研究3个层面。鉴于我国目前的海岛管理制度在法律、社会、经济和生态等多方面环境约束下存在一系列的问题,诸如法律法规的不完善、海岛居民异地搬迁管理制度不完善、无居民海岛的个人特许经营制度效用低下、海岛生态系统保护管理执法力度欠缺,综合现代社会发展前沿趋势,针对不同的环境约束提出优化我国海岛管理制度的建议和对策,包括完善海岛立法体系、完善岛民外迁政策、创新经济机制与加强过程监管并举等。海岛巨大的军事、生态、经济和科研价值使得对海岛管理制度的研究意义深远,为我国海岛的可持续发展提供更多动力。     

Sponge disease in the Adriatic Sea

A mass mortality episode involving three marine dyctioceratid sponges, Ircina variabilis, Sarcotragus spinosulus and Spongia officinalis, was observed on ‘Scoglio del Trave’ (Conero Promontory, North Adriatic Sea) in late summer 2009. In this area, calm sea and high temperatures throughout summer created unfavorable environmental conditions, leading to the outbreak of the disease. Affected specimens showed evident necrotic areas and portions with bare skeleton, and many specimens of S. spinosulus were covered with a white mat of cyanobacteria. In September 2009, about 22% of these demosponges suffered from this disease. The mortality event ceased when sea temperature dropped below 20 °C. Small specimens turned out to be more sensitive to the diseases, whereas the damaged tissues of large specimens were able to recover. In October, the damaged specimens were detached by the rough sea and more than 900 beached sponges were found along the 1‐km‐long beach, showing the seriousness of the phenomenon, which probably involved not only the area studied but also areas adjacent to it.     

中国北方沿海竿虾虎鱼(Luciogobius guttatus)隐存多样性与群体历史动态

竿虾虎鱼(Luciogobius guttatus)隶属于拟虾虎鱼亚科(Gobionellinae),已知分布于中国沿海、朝鲜半岛和日本的岩基砾石质潮间带。日本学者发现竿虾虎鱼在日本沿海存在三个谱系,但在我国,针对竿虾虎鱼的研究仅限于形态测量和野外调查记录。基于线粒体DNA和核基因序列标记,本研究从系统发育和群体遗传两个角度,揭示竿虾虎鱼在我国北方沿海的隐存多样性与群体历史。结果表明,与日本分布的竿虾虎鱼对比,我国北方沿海分布的竿虾虎鱼存在以崂山为潜在屏障的偏南、偏北两个谱系,分别对应于日本沿海的谱系A和谱系C,缺少谱系B。本研究推测,末次冰期对竿虾虎鱼的有效种群扩张和群体的分化及扩散起到关键作用,且不同谱系对冰期气候变化的反应并不一致。本研究初步查明了中国北方沿海竿虾虎鱼的隐存多样性现状,为我国竿虾虎鱼的保护提供了分子依据。     

山东沿海岛屿概况及其开发

山东沿海共有305个岛屿,大部分岛屿的面积小于O.1km~2。,高度小于20m。按岩性分为基岩岛(包括岛、群岛和陆连岛)和冲积沙岛(包括沙岛和贝壳沙岛)。根据海岛的不同特点,可综合开发为海珍品基地和旅游避暑胜地。     

Regional and species specific sexual reproductive patterns of three zooxanthellate scleractinian corals across the Eastern Tropical Pacific

Sexual reproduction of zooxanthellate scleractinian corals in the Eastern Tropical Pacific (ETP) is influenced by the interactive effects of regional and local oceanographic conditions, as well as a variety of other environmental factors. Differences in spatial and temporal gamete development and reproductive patterns of three widespread scleractinian corals of this region—Pocillopora damicornis (branching colony morphology, characterized as hermaphrodite broadcaster), Pavona gigantea (massive colonies, characterized as gonochoric broadcaster/sequential co‐sexually hermaphroditic) and Porites panamensis (encrusting colonies, characterized as gonochoric brooder)—were evaluated at local and regional scales across the ETP. This area extended from the Gulf of California (24°N) to the southern coast of Ecuador (–1°S), including offshore islands, using existing data pooled from prior studies. Predictive models were employed based on environmental variables: sea surface temperature, daylight hours, diffuse attenuation co‐efficient at 490 nm and photosynthetically active radiation. Datasets were extracted from satellite images ( https://oceancolor.gsfc.nasa.gov ) and analysed using WAM_STATIST ver. 6.33® software to obtain monthly average data from each site. The spatial (region, sub‐region and site) and seasonal (wet, dry) variation in reproductive activity (% colonies with gametes) differed among the three species; significant interactions were season × sub‐region for P. damicornis, season × site (sub‐region) for P. gigantea, and season × site for P. panamensis, for which sub‐region was not considered as a factor. The predictive models also suggest that gamete production/maturation of P. damicornis and P. gigantea is influenced by local differences in sea surface temperature and daylight hours. Porites panamensis was not correlated with any environmental variable examined. Variations in local and regional reproductive developmental patterns are likely an acclimatization response by each species imposed by the timing and duration of local stressor events. This analysis has provided insights into the diverse local and regional physical drivers that affect species responses and acclimatization in sexual reproduction across the ETP.