南海深海沉积物中52株真菌的初步分离鉴定及其代谢产物活性

【背景】深海环境复杂多样,蕴含着丰富的真菌资源,为深海真菌结构新颖代谢产物化学及生物活性研究提供了新契机。【目的】对南海深海环境来源真菌进行初步鉴定和代谢产物活性初步研究,旨在筛选和发现潜在的药源真菌新资源,为南海深海真菌资源的进一步开发利用奠定基础。【方法】基于内转录间隔区(ITS)序列测定对分离得到的52株真菌进行初步鉴定,利用纸片扩散法、Solis改良法和DPPH自由基清除法对真菌粗浸膏进行了抗菌(ABA)、卤虫致死(BSL)和抗氧化活性(ABTS)筛选。【结果】52株真菌分布在16个属,其中枝孢菌属(Cladosporium)、曲霉属(Aspergillus)为优势菌群,分别占菌株总数的25.00%、23.08%;32株真菌发酵产物具有抑制至少1种指示菌的活性,其中8株对所有指示菌均有抑制作用;23株具有一定强度的卤虫致死活性,占总数的44.23%,其中有2株活性较显著,IC50值为68.59μg/mL和78.83μg/mL;30株具有DPPH自由基清除活性,占总数的57.69%,其中有9株活性较显著,EC50值低于100μg/mL。【结论】初步认知了南海部分海域深海沉积环境真菌分布和代谢产物活性特征,发现了一批潜在的活性真菌资源,为后续深海真菌代谢产物化学多样性及其功能研究提供支撑。     

一株具有杀虫活性真菌的鉴定

通过对分离的一株海绵共附生真菌F28的形态特征、生理生化特性的测定及ITS1-5.8S-ITS2序列分析,最终将其确定为米曲霉(Aspergillus oryzae)。该菌株具有生长快,易培养的特点。将该菌株进行发酵和杀虫活性物质提取分离后,通过杀卤虫(Brine Shrimp)活性测试,发现该真菌的代谢产物粗提物具有很强的杀虫活性。     

中国南海部分深海沉积物真菌多样性及其抗菌活性

【目的】从南海4个站位的深海沉积物中分离真菌,揭示其多样性并测定抗菌活性。【方法】使用4种培养方法和8种培养基,从12个深海沉积物样本中分离培养真菌,通过菌落形态观察和ITS序列系统发育分析进行鉴定。采用滤纸片扩散法和生长速率法分别测试真菌小量发酵液粗浸膏的抗细菌和抗真菌活性。【结果】共分离到125株纯培养真菌,基于形态和ITS序列分析,排重后得到18个种类型,这些真菌可以划分到12个属,大多数属于子囊菌门(Ascomycota),只有2株属于担子菌门(Basidiomycota)。4个站位可培养真菌多样性具有差异性。抑菌活性筛选显示,大多数真菌具有较好的抑菌活性;链格孢属(Alternaria)、青霉属(Penicillium)、匐柄霉属(Stemphylium)这几个属的真菌表现出对多种指示细菌有抑制作用,尤其是Alternaria tenuissima DN09、Alternaria alternata DN14和Penicillium chrysogenum DN16对G~+和G~–细菌均表现出抑制作用。【结论】本研究揭示了南海深海沉积物可培养真菌多样性和抑菌活性,为进一步利用深海沉积物来源真菌奠定了基础。     

一株具有杀虫活性真菌的筛选及活性物质稳定性研究

以卤虫为初筛指示虫,以蚜虫为复筛指示虫,从广西玉林土壤分离筛选出具有杀虫活性的菌株YLZ42。根据培养特征、形态特征及18S rDNA、ITS序列分析,菌株YLZ42被鉴定为淡色生赤壳菌(Bionectria ochroleuca)。生物测定结果表明,YLZ42发酵液的乙酸乙酯萃取物对小菜蛾、棉铃虫、甜菜夜蛾具有明显的毒杀活性,其校正死亡率在78.9%以上。YLZ42发酵液稳定性研究表明,其活性成分在100℃处理60 min,pH1-11条件下仍具有较强的杀虫活性。     

一株内生真菌黑曲霉的活性检测及鉴定

从飞龙斩血内分离到一株产广谱、高活性抑菌物质的内生真菌F-001,经测定对细菌、植物病原真菌和皮肤致病真菌共26种病原微生物有不同程度的抑制作用。对其进行了系统鉴定和生物学研究,形态特征表明,该菌株与曲霉属Paecilomyces Bainier中的黑曲霉Paecilomyceslilacinus的特征基本一致,ITS序列分析显示本菌株与多个黑曲霉菌株同源性都在99%,因此将菌株F-001命名为黑曲霉Paecilomyces lilacinusF-001。该研究首次从核桃树皮内分离得到黑曲霉并进行了该菌株的抑菌活性检测。     

抗菌活性海洋真菌HN4-13的鉴定及其发酵优化

[目的]鉴定一株来源于连云港近岸海域沉积物并具有分泌抗菌活性代谢产物的真菌菌株HN4-13,优化其合成抗菌活性物质的发酵条件.[方法]通过形态学观察及ITS序列分析方法对菌株HN4-13进行鉴定;通过基础发酵培养基筛选、碳氮源及无机盐的单因素试验,继而采用正交试验设计优化其合成抗菌活性物质的发酵条件.[结果]菌株HN4-13被鉴定为黄柄曲霉(Aspergillus flavipes),其分泌抗菌活性产物的发酵条件为:4％蔗糖、0.5％蛋白胨、0.1％ KCl、0.06％ NaH2PO4、28℃、1％接种量、160 r/min培养9d.[结论]实验结果为进一步分离纯化菌株HN4-13所产抗菌活性代谢产物提供了基础.     

一株抗肿瘤活性的粗榧内生真菌的鉴定及其产物特性初步研究

利用传统分类学方法、电子显微镜观察、18S rDNA和ITS序列的测定以及系统发育分析对一株分离自粗榧抗肿瘤活性内生真菌HCCB1621进行分类鉴定,并对其产物抗肿瘤活性进行了初步研究．各种指标鉴定其为木霉属真菌绿色木霉（Trichoderma viride Pers．ex Fr）．该菌株经发酵培养120h,抗瘤活性达最强;活性在pH4～9范围内稳定：60℃处理1h,活性稳定,这些特性为活性产物的分离纯化和稳定性研究提供了必要的参考．     

冰核真菌的冰核活性及其种类鉴定

作者从1993年起至今,从已分离和搜集到的500多株真菌中筛选出在-5℃具有冰核活性的真菌6株,它们-5℃的冻滴率高低顺序为F9502（100%）=F9501（100%）＞F9401（96％）=AS3．494（96%）＞F9801（94%）＞F9802（92%）,结冰点高低顺序为F9502（-2．7℃）＞F9501（-3．4℃）＞F9401（-4.4℃）＞AS34594（-4.5℃）＞F9801（-4．7℃）＞F9402（-4．8℃）,以F9502菌株活性强而稳定。经鉴定确定：F9401和F9402菌株为FusartumSportFichioldesSherb．;AS3．4594菌株为FavenaceumSacc．;F9501和F9502菌株为F.gramlnearumSchwabe;F9801菌株为F．monilijormeSheldon。F．Sportrlchloides和F．graminearum作为冰核真菌未见报道。本结果为揭示冰核真菌与植物冻害关系及冰核真菌开发应用研究提供了菌种资源,有重要应用价值。     

冰核真菌的冰核活性及其种类鉴定

作者从１９９３年起至今,从已分离和搜集到的５００多株真菌中筛选出在－５℃具有冰核活性的真菌６株,它们在－５℃的冰滴率高低顺序为Ｆ９５０２（１００％）＝Ｆ９５０１（１００％）〉Ｆ９４０１（９６％）＝ＡＳ３．４５９４（９６％）〉Ｆ９８０１（９４％）〉Ｆ９８０２（９２％）,结冰点高低顺序为Ｆ９５０２（－２．７℃）〉Ｆ９５０１（－３．４℃）〉Ｆ９４０１（－４．４℃）〉ＡＳ３．４５９４（－４．５℃）〉Ｆ９８     

一株牛蒡共生真菌杀虫活性的研究

为寻找新型微生物农药,对分离自牛蒡茎的一株共生真菌NJ-1菌丝体和发酵液粗提物分别进行杀虫活性研究。采用组织块法从健康牛蒡植物的茎中进行菌株分离;采用卤虫作为生物模型进行杀虫活性物质的筛选。通过PCR扩增鉴定真菌NJ-1为四孢脉孢菌(Neurospora tetrasperma);该真菌菌丝体和发酵液粗提物对卤虫的半数致死量(LD50)分别是0.84 mg/mL和0.27 mg/mL;经与三种常见化学农药氯氰菊酯、敌敌畏和氧乐果对卤虫半数致死量对比,该真菌发酵液粗提物LD50是对照组活性最好的敌敌畏LD50的2.3倍。牛蒡共生真菌NJ-1粗提代谢物具有很强的杀虫活性,可为新型微生物农药开发提供生物来源。     

Degradation of Dimethyl Isophthalate by Viarovorax paradoxus Strain T4 Isolated from Deep-Ocean Sediment of the South China Sea

Viarovorax paradoxusT4 strain was isolated from deep-ocean sediment and demonstrated to be able to degrade dimethyl isophthalate (DMI). When DMI was utilized as the sole source of carbon and energy, it was transformed by hydrolysis initially, forming monomethyl isophthalate (MMI) and isophthalate acid (IA) as degradation intermediates. DMI and MMI were completely transformed to MMI and IA in about 100 h, respectively. Degradation of IA was completed in about 55 h. Analysis of total organic carbon in the culture medium confirmed that more than 80% of the substrate carbon was mineralized. Bacterial esterase induced by a range of substrates could be assessed using p-nitrophenyl acetate as the common substrate using crude enzyme preparation. The decreasing trend of K _m values derived from the Michaelis–Menten equation was dimethyl phthalate (DMP) > monomethyl phthalate (MMP) > dimethyl terephthalate (DMT) > Liver esterase > DMI > MMI > monomethyl terephthalate (MMT), indicating that higher K _m values were obtained by di-esters than mono-ester and the esters induced by terephthalate esters showed the highest activity. This investigation suggests that biochemical pathways for phthalate esters share many common characteristics and the esterases induced by different substrates are highly specific.     

Environment-Dependent Distribution of the Sediment nifH-Harboring Microbiota in the Northern South China Sea

The South China Sea (SCS), the largest marginal sea in the Western Pacific Ocean, is a huge oligotrophic water body with very limited influx of nitrogenous nutrients. This suggests that sediment microbial N₂ fixation plays an important role in the production of bioavailable nitrogen. To test the molecular underpinning of this hypothesis, the diversity, abundance, biogeographical distribution, and community structure of the sediment diazotrophic microbiota were investigated at 12 sampling sites, including estuarine, coastal, offshore, deep-sea, and methane hydrate reservoirs or their prospective areas by targeting nifH and some other functional biomarker genes. Diverse and novel nifH sequences were obtained, significantly extending the evolutionary complexity of extant nifH genes. Statistical analyses indicate that sediment in situ temperature is the most significant environmental factor influencing the abundance, community structure, and spatial distribution of the sediment nifH-harboring microbial assemblages in the northern SCS (nSCS). The significantly positive correlation of the sediment pore water NH₄⁺ concentration with the nifH gene abundance suggests that the nSCS sediment nifH-harboring microbiota is active in N₂ fixation and NH₄⁺ production. Several other environmental factors, including sediment pore water PO₄³⁻ concentration, sediment organic carbon, nitrogen and phosphorus levels, etc., are also important in influencing the community structure, spatial distribution, or abundance of the nifH-harboring microbial assemblages. We also confirmed that the nifH genes encoded by archaeal diazotrophs in the ANME-2c subgroup occur exclusively in the deep-sea methane seep areas, providing for the possibility to develop ANME-2c nifH genes as a diagnostic tool for deep-sea methane hydrate reservoir discovery.     

薯蓣内生真菌抗氧化活性的初步研究

用碘量法研究了4株薯蓣内生真菌的发酵液和菌丝的抗氧化活性。结果表明,4株菌株的菌丝和发酵液具有不同的抗氧化活性,其中从薯蓣块茎中分离得到菌株EDT5发酵液的抗氧化活性最强,从薯蓣种子中分离得到菌株EDS4发酵液的抗氧化活性次之,并且在一定范围内,随着发酵液粗提物浓度的增加,其抗氧化活性增强。EDT5和EDS4发酵液的抗氧化效果高于或近于其宿主薯蓣而高于维生素E的抗氧化效果,表明内生真菌是天然抗氧化产物开发的潜在重要资源之一。     

Seohaeicola nanhaiensis sp. nov., A Moderately Halophilic Bacterium Isolated from the Benthic Sediment of South China Sea

An aerobic, Gram-staining negative, non-motile, and rod-shaped bacterial strain, SS011A0-7#2-2^T, was isolated from the sediment of South China Sea with the depth of 1,500 m. Optimum growth occurred at pH 8.0, 30 °C, and 6 % (w/v) NaCl. Strain SS011A0-7#2-2^T did not synthesize bacteriochlorophyll a or carotenoid, neither possess photosynthesis genes. Its genome DNA G+C content was 67.9 mol%. It contained Q-10 as the predominant ubiquinone and C_18:1 ω7c (52.3 %) as the major fatty acid. The major polar lipids were phosphatidylcholine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, unidentified phospholipid, and unidentified aminolipid. The 16S rRNA gene sequence analysis revealed that it was closely related to Seohaeicola saemankumensis SD-15^T, Phaeobacter gallaeciensis BS 107^T and Roseovarius pacificus 81-2^T in Rhodobacteraceae, with the 16S rRNA gene sequence similarities being 96.5, 95.7, and 95.6 %, respectively. However, the phylogeny of the 16S rRNA gene sequences revealed that strain SS011A0-7#2-2^T was a member of the genus Seohaeicola. Strain SS011A0-7#2-2^T was moderately halophilic which was different from Seohaeicola saemankumensis SD-15^T, and it showed the enzyme activities and carbon source spectrum significantly different from Seohaeicola saemankumensis SD-15^T. As its physiological and chemotaxinomic properties were different from those of Seohaeicola saemankumensis SD-15^T, strain SS011A0-7#2-2^T represents a novel species of the genus Seohaecola. The name Seohaeicola nanhaiensis sp. nov. is proposed, with strain SS011A0-7#2-2^T (=LMG 27733^T = CGMCC 1.12759^T) as the type strain.     

Paracoccus beibuensis sp. nov., Isolated from the South China Sea

A Gram-negative, non-motile, short rod-shaped or spherical bacterial strain that accumulates poly-β-hydroxybutyrate (PHB) granules was isolated from the Beibu Gulf in the South China Sea. Cells have no polar or subpolar flagella, dividing by binary fission. Phylogenetic analyses based on 16S rRNA gene sequences showed that the strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Paracoccus, family Rhodobacteraceae, order Rhodobacterales, class Alphaproteobacteria. The closest neighbours were Paracoccus aestuarii strain B7(T) (97.2% similarity), Paracoccus zeaxanthinifaciens ATCC 21588(T) (97.1% similarity) and Paracoccus homiensis DD-R11(T) (96.8%). The predominant fatty acids were C(18:1) ω7c (82.1%), and significant amounts of C(18:0) (5.6%), C(10:0) 3-OH (2.3%) and C(16:0) (1.5%) were present. The predominant respiratory ubiquinone of strain JLT1284(T) was Q-10 and the DNA G+C content of strain JLT1284(T) was 67.0 mol%. The isolate was also distinguishable from members of the genus Paracoccus on the basis of phenotypic and biochemical characteristics. It is evident from the genotypic, chemotaxonomic and phenotypic data, therefore, that strain JLT1284(T) represents a novel species of the genus Paracoccus, for which the name Paracoccus beibuensis sp. nov. is proposed. The type strain is JLT1284(T)=LMG 24871(T)=CGMCC 1.7295(T)).     

Genome Sequence of the Protease-Producing Bacterium Rheinheimera nanhaiensis E407-8T,Isolated from Deep-Sea Sediment of the South China Sea

The protease-producing bacterium E407-8^T was isolated from deep-sea sediment of the South China Sea and has been identified recently as representing a new species, Rheinheimera nanhaiensis. The draft genome of R. nanhaiensis E407-8^T consists of 3,987,205 bp and contains 3,730 predicated protein-coding genes, including 82 extracellular peptidase genes.     

南海局部海洋沉积物中真菌多样性及产酶活性

【目的】从11份南海海洋沉积物中分离耐盐真菌,并对其物种多样性及产酶活性进行研究。【方法】利用平板涂布法分离耐盐真菌,基于形态学和ITS序列的系统进化研究耐盐真菌多样性;利用6种筛选培养基对耐盐真菌进行产酶活性筛选。【结果】分离得到1689株耐盐真菌,共41个形态种。形态学和ITS序列分析表明,这些真菌归于15个属,其中曲霉属(Aspergillus)和青霉属(Penicillium)为优势菌群。对已测序的41株耐盐真菌的产酶活性研究表明,8株产纤维素酶,9株产淀粉酶,5株产复合酶,16株产蛋白酶,3株产脂肪酶,未发现产壳聚糖酶的菌株,其中Acrodontium sp.8m和Aspergillus sp.86b产复合酶的活性相对较高,而Penicillium sp.41m产蛋白酶的活性相对较高。【结论】南海局部海洋沉积物中耐盐真菌丰富,多数菌株具有产酶活性。     

一株抑制黄曲霉毒素的深海微杆菌的分离与鉴定

从南大西洋深海海水中分离到一株放线菌菌株R104,该菌株的发酵无细胞上清液对黄曲霉毒素合成的抑制率高达96.2%,经16S rDNA序列分析,初步将该菌株鉴定为微杆菌（Microbacterium）,这是首次报道深海来源的微杆菌具有抑制黄曲霉毒素合成的能力。     

Archaeal Diversity and Spatial Distribution in the Surface Sediment of the South China Sea

Archaea represent a significant portion of biomass in the marine sediments and may play an important role in global carbon cycle. However, the identity and composition of deep sea sediment Archaea are unclear. Here, we used the archaeal 16S rRNA gene primers to determine the diversity and community structure of Archaea from shallow water (<100 m) and deep water (>1500 m) sediments in the South China Sea. Phylogenetically the archaeal community is separated between the shallow- and deep sea sediments, with the former being dominated by the Thaumarchaeota and the latter by the Marine Benthic Group B, E and the South African GoldMine Euryarchaeotal Group as well as Thaumarchaeota. Sand content showed significant correlation with Thaumarchaeota, suggesting that the porous media may create an oxic environment that allowed these aerobic organisms to thrive in the surface sediments. The carbon isotope composition of total organic carbon was significantly correlated to the distribution of archaeal groups, suggesting that Archaea overall may be constrained by the availability or sources of organic carbon in the sediments of the South China Sea.     

Diversity and Antimicrobial Activity of Culturable Fungi Isolated from Six Species of the South China Sea Gorgonians

Fungi in gorgonians are now known to cause gorgonian diseases, but little attention has been paid to the nature of fungal communities associated with gorgonians. The diversity of culturable fungi associated with six species of healthy South China Sea gorgonians were investigated using a culture-dependent method followed by analysis of fungal internal transcribed spacer sequences. A total of 121 fungal isolates were recovered and identified using the Basic Local Alignment Search Tool search program. These belonged to 41 fungal species from 20 genera. Of these, 30 species and 12 genera are new reports for gorgonians, and the genera Aspergillus and Penicillium were the most diverse and common in the six gorgonian species. Comparison of the fungal communities in the six gorgonian species, together with results from previous relevant studies, indicated that different gorgonian species and the same gorgonian species living in different geographic locations had different fungal communities. The gorgonian Dichotella gemmacea harbored the most fungal species and isolates, while Echinogorgia aurantiaca had the least fungal diversity. Among the six media used for fungal isolation, potato glucose agar yielded the highest isolates (27 isolates), while glucose peptone starch agar had the best recoverability of fungal species (15 species). The antimicrobial activity of the 121 fungal isolates was tested against three marine bacteria and two marine gorgonian pathogenic fungi. A relatively high proportion (38?%) of fungal isolates displayed distinct antibacterial and antifungal activity, suggesting that the gorgonian-associated fungi may aid their hosts in protection against pathogens. This is the first report comparing the diversity of fungal communities among the South China Sea gorgonians. It contributes to our knowledge of gorgonian-associated fungi and further increases the pool of fungi available for natural bioactive product screening.