深红红螺菌吸氢酶缺失突变株在管式光合反应器中的产氢

本研究设计了一种2 L分体式管式光合反应器, 并研究了深红红螺菌(Rhodospirillum rubrum)吸氢酶缺失突变株在该反应器中分别利用人工光源(持续光照与光暗交替)和自然光的产氢规律。结果表明在人工光照条件下R. rubrum的产氢可维持5 d, 持续光照和光暗交替条件下(12 h: 12 h)的氢产量可分别达到5752 mL/PBR ± 158 mL/PBR和5012 mL/PBR ± 202 mL/PBR; 自然光条件下, 最适产氢光照强度为30000 Lux~40000 Lux; 在此光照条件下, R. rubrum产氢可维持6 d~ 10 d, 最高氢产量可达到2800 mL/PBR。尽管利用自然光的氢产量比利用人工光源氢产量低, 但是利用自然光的产氢比较经济, 并且该光合产氢系统操作简单, 该工艺有望开发为低成本的光合细菌产氢技术。     

用PCR方法从基因组DNA中扩增人睫状神经营养因子基因

用ＰＣＲ方法从基因组ＤＮＡ中扩增人睫状神经营养因子基因杜方勇,甘思德,范明,刘淑红（北京军事医学科学院基础医学研究所１００８５０）ＰＣＲ方法具有操作方便、对模板要求不高、能快速高效地从原材料中得到微克水平的基因片段等优点,但用它从基因组ＤＮＡ扩增长片...     

用DNA扩增法检测镰状细胞基因

本文报道应用DNA扩增技术对国内首例镰状细胞特征患者(Hb s杂合子)进行基因诊断。方法是从患者干血标本中微量抽提基因组DNA,通过聚合酶链反应(PCR)扩增其β珠蛋白基因,经限制性内切酶MstⅡ消化后作电泳分析直接检测Hb S基因。本文介绍的DNA诊断技术快速、灵敏、简便,它不需要放射性同位素标记的探针,可以采用干血抽提的DNA,因此,对遗传病基因诊断和携带者的筛查具有重要价值。     

由小麦赤霉病菌菌丝快速提取DNA用于PCR扩增反应

采用加玻璃珠混合振荡１８００ｒ／ｍｉｎ１５分钟并９５℃水浴加热１０～２０分钟的物理破壁方法由真菌菌丝直接提取ＤＮＡ用于ＰＣＲ扩增,具有所提ＤＮＡ可扩增性好,提取方法简便易行,便宜等优点,相同引物或不同引物的二次扩增产物均好于一次扩增,且以引物Ｂ１和Ｂ３扩增后再且引物Ｆｇｌ和Ｆｇ２扩增的效果最好,此法可广泛应用于大量样品的ＰＣＲ和ＲＡＰＤ扩增实验。     

扩增大段靶DNA的PCR方法

扩增大段靶ＤＮＡ的ＰＣＲ方法陈尚武,王章（中山大学生命科学学院,广州）ＰＣＲ和分子克隆是扩增遗传物质的常用技术。热稳定Ｔａｑ（Ｔｈｅｒｍｕｓａｑｕａｔｉｃｕｓ）ＤＮＡ聚合酶的应用以及ＰＣＲ技术所固有的迅速、简便、廉价等优点,使ＤＮＡ片段的ＰＣＲ扩增成...     

单纯疱疹病毒的PCR直接基因分型

本文利用ＰＣＲ技术建立一种对ＨＳＶ直接基因分型的方法。在ＨＳＶ－Ⅰ、Ⅱ两型的ＤＮＡ多聚酶基因上设计了一条两型共同的上游引物（ＨＤＰ－Ｂ）和两条型特异的下游引物（ＨＤＰ－１、ＨＤＰ－２）。三条引物共同组成一个扩增反应体系,在ＨＳＶ－Ⅰ产生５４３ｂｐ条带,ＨＳＶ－Ⅱ产生３７２ｂｐ条带,据此在基因水平上对ＨＳＶ进行分型。５株不同来源的ＨＳＶ（２株Ⅰ型,３株Ⅱ型）分型结果与病毒分离及血清学方法完全一致。该     

促髓细胞分化的锌指基因单向PCR扩增直接测序的研究

锌指基因是一种造血调节基因,编码锌指结构蛋白,主要在髓细胞中表达,促进髓细胞分化在急性早幼粒白血病维甲酸治疗中,促使病情缓解,本文报道了我们从基因分子上研究锌指基因作用中,探索并建立了单向聚合酶链反应扩增特定单链ＤＮＡ,直接测序的新方法,它能产生质和量均佳的单均ＤＮＡ,无需纯化即可直接用于测序,使复杂的测序研究简便易行,可在２,３天内完成,这各单向ＰＣＲ扩增特定单链ＤＮＡ直接测序的方法,经对锌指基     

对PCR扩增片段克隆操作的几点体会

PCR,技术的应用，极大方便了对已知序列基因某一片段的克隆，但在实际操作中某些容易忽视的因素有可能导致实验失败，以下将我们在这方面工作中的几点体会总结如下以供借鉴。1．引物设计。在引物5＇端设计酶切位点序列时一般要加保护碱基，如BamHI识别序列为5＇-GGATCC，应设计成5＇－CGGGATCC，这样才能保证下一步酶切反应的正常进行，因为5＇端裸露的位点往往不能为限制酶识别，具体何种位点加什么保护碱基可参阅NewEnglandBiolabs96／97Catalog或其它有关材料。2．片段处理。PCR扩增片段最好用酚：氯仿抽提以除尽Taq酶，单纯…     

Glycolate excretion by Rhodospirillum rubrum

Glycolate can be measured in the supernatant fraction after incubation of butyrate-grown cells of Rhodospirillum rubrum either colorimetrically by the Calkins method or enzymatically using glycolate oxidase. Under optimal conditions, half-maximal excretion occurs at 11% O₂ and the maximal rate is 6.9 nmol of glycolate min^-1 mg protein^-1 at 30°C. The pH and temperature optima are 7.6 and 30°C and light intensity is saturating in the range of 2–10×10⁴ lux. Carbon dioxide inhibits glycolate excretion and exogenous butyrate stimulates. Glycolate excretion is maximal by butyrate-light grown cells harvested in the early stationary phase and under all conditions is proportional to the cellular content of ribulose 1,5-bisphosphate carboxylase/oxygenase.Non-Standard Abbreviations Bicine (N,N-bis[2-hydroxyethyl]glycine) - RuBP d-ribulose-1,5-bisphosphate - HPMS 2-pyridylhydroxymethanesulfonate     

Unidirectional inhibition of phosphoenolpyruvate carboxykinase from Rhodospirillum rubrum by ATP

The kinetic and regulatory properties of partially purified phosphoenolpyruvate (PEP) carboxykinase (EC 4.1.1.32) from Rhodospirillum rubrum were studied. The enzyme was active with guanosine-and inosinephosphates and must thus be classified as GTP (ITP): oxaloacetate carboxylyase (transphosphorylating). In the direction of oxaloacetate-formation, the enzyme was strongly inhibited by ATP (K_i=0.03 mM). ITP, UTP, CTP and GTP were less inhibitory. The inhibition was competitive with respect to GDP or IDP, but not with respect to PEP. In the direction of PEP-synthesis, the enzyme was not inhibited, but rather activated by ATP.     

The lipopolysaccharides of Rhodospirillum rubrum,Rhodospirillum molischianum,and Rhodopila globiformis

The cell wall lipopolysaccharides from three phototrophic species of the alpha₁-group of Proteobacteria, Rhodospirillum rubrum, Rhodospirillum molischianum, and Rhodopila globiformis were isolated and chemically characterized. Sodium deoxycholate polyacrylamide gel electrophoresis patterns revealed that the lipopolysaccharides of all three species possess O-chains. They are composed of repeating units only in R. molischianum and R. globiformis. The presence of l-glycero-d-mannoheptose and 2-keto-3-deoxyoctonate indicated core structures in all three lipopolysaccharides. Glucosamine was found as backbone amino sugar in lipid A of R. molischianum and R. rubrum, while R. globiformis has 2,3-diaminoglucose as backbone amino sugar. The latter species also differed from the two former ones in its content of hydroxy fatty acids (3-OH-14:0, 3-OH-16:0 in R. rubrum and R. molischianum and 3-OH-14:0, 3-OH-18:0 and 3-OH-19:0 (possibly iso- or anteisobranched) in R. globiformis).Abbreviations DOC-PAGE sodium deoxycholate polyacrylamide gel electrophoresis - GC/MS combined gas-liquid chromatography/mass spectrometry - KDO 2-keto-3-deoxyoctonate     

Purification of an LHI-RC-complex of Rhodospirillum rubrum by solubilization of chromatophores with a short-chain lecithin

Chromatophores from Rhodospirillum rubrum were solubilized using the detergent 1,2-diheptanoyl-sn-phosphatidylcholine (DHPC). The solubilization curves are sigmoidal reaching a plateau at a detergent/protein ratio of 2–3 mol/mg corresponding to 75–90% solubilized protein. The BChl-binding proteins are stable over a large range of DHPC/protein ratios. A complex of BChl-binding proteins containing both LHI- and RC-polypeptides (LHI-RC-complex) was purified using a two step procedure. RC photochemical activity as well as absorption and near-IR CD spectra showed the complex to be active and stable after purification in presence of DHPC.Abbreviations ATPase adenosine triphosphatase - BChI bacteriochlorophyll - DHPC 1,2-diheptanoyl-sn-phosphatidylcholine - DNAse deoxyribonuclease - INT 2-[4-iodophenyl]-3-[4-nitrophenyl]-5-phenyltetrazolium chloride - LDAO lauryl-N,N-dimethylamine-N-oxide - LHI-complex light harvesting complex - PMSF phenylmethylsulfonyl fluoride - RC-complex reaction center complex - SDS-PAGE sodium dodecyl sulfate polyacrylamide gel electrophoresis - TCA trichloroacetic acid This work is dedicated to the memory of Prof. D. I. Arnon.     

Homoserine kinase from the phototrophic bacterium Rhodospirillum rubrum is not sensitive to feedback inhibition by l-threonine

Abstract Homoserine kinase (EC 2.7.1.39), one of the enzymes of L -threonine synthesis, was purified 200-fold from the phototrophic bacterium Rhodospirillum rubrum strain S1 by salt precipitation, hydrophobic interaction chromatography and gel filtration. The enzyme had a M _r of about 145000 and was active with L -homoserine ( K _m= 3 mM) and ATP ( K _m= 0.44 mM). In contrast to the kinase from the enteric bacterium, Escherichia coli , the R. rubrum enzyme was neither stabilized nor inhibited by L -threonine. Of 18 amino acids and metabolites tested (including L -allo-threonine, D -allo-threonine, DL -homocysteine, o -phosphoserine and L -norleucine), none was found to be inhibitory.     

Artificial DNA-mediated genetic transformation of the photosynthetic nitrogen-fixing bacterium Rhodospirillum rubrum

Methods were identified for the introduction of plasmid DNA into Rhodospirillum rubrum, including freeze-thaw and CaCl₂-based techniques.Abbreviations cfu colony forming units - DMSO dimethyl sulfoxide - DTT dithiothreitol - O.D.₆₈₀ optical density at 680 nm     

Purification and properties of the carbonic anhydrase of Rhodospirillum rubrum

The carbonic anhydrase (EC 4.2.1.1) of Rhodospirillum rubrum has been purified to apparent homogeneity and some of its properties have been determined. The enzyme was cytoplasmic and was found only in photosynthetically grown cells. It had a molecular weight of about 28,000, and was apparently composed of two equal subunits. The amino acid composition was similar to that of other reported carbonic anhydrases except that the R. rubrum enzyme contained no arginine. The isoelectric point of the enzyme was 6.2 and the pH optimum was 7.5. It required Zn(II) for stability and enzymatic activity. The K _m(CO₂) was 80 mM. Typical carbonic anhydrase inhibition patterns were found with the R. rubrum enzyme. Strong acetazolamide and sulfanilamide inhibition confirmed the importance of Zn(II) for enzymatic activity as did the anionic inhibitors iodide, and azide. Other inhibitors indicated that histidine, sulfhydryl, lysine and serine residues were important for enzymatic activity.Abbreviation CA carbonic anhydrase In memory of R. Y. Stanier     

Freeze fracture studies of reaction centers from Rhodospirillum rubrum in chromatophores and liposomes

In freeze-fractures of chromatophores of Rhodospirillum rubrum the reaction centers are seen as hexagonal arranged particles of 13 nm diameter with a density of around 5,500 particles per m². Similar regions on the cytoplasmic membrane suggest that these parts are the prospective invagination sites.Isolated reaction centers are easily incorporated into liposomes. In freeze fractures of liposomes particles similar in shape and size, although less dense as in chromatophores are observed. In negative staining much smaller units of only 5 nm in diameter are found indicating that reaction centers occur in the membrane as tri- or tetramers. There is a strong correlation between particle density in chromatophores and titratable reaction centers remaining in these membranes after extraction of reaction centers by detergents; both values are in good agreement with the yield of reaction centers at a given detergent concentration.Abbreviations LDAO Lauryldimethylamine oxide - PF protoplasmic fracture face - EF exoplasmic fracture face     

Anaerobic detoxification fermentation by Rhodospirillum rubrum for rice straw as feed with moderate pretreatment

A novel and effective process was put forward for converting rice straw into feed by combining diluted acid hydrolysis and ammonization with Rhodospirillum rubrum fermentation. After pretreatment with dilute sulfuric or phosphoric acid (1%, w/w) at 100°C, materials were subjected to fermentation under several gases (N₂, CO₂, and air) and different light intensities in a 2-L fermentor. The key indexes of feed for fermented materials were estimated and several toxic substances were investigated during the fermentation. Following sulfuric acid treatment, the true protein of rice straw increased from 29 to 143?g?kg^?1 and the crude fiber decreased from 359 to 136?g?kg^?1 after fermentation at 0.3?L?min^?1?L^?1 of N₂ flow and a light intensity of 3400 lux; and following phosphoric acid treatment, the true protein increased by 286% and the crude fiber decreased by 52% after fermentation at 0.4?L?min^?1?L^?1 of N₂ flow and a light intensity of 3000 lux. Other key contents were also improved for use as feed, and some toxic substances (i.e., furfural, hydroxymethylfurfural, acetic acid, phenol, cresol) produced by the pretreatments could be removed at low levels during the fermentations.     

Characterization of the interaction of dinitrogenase reductase-activating glycohydrolase from Rhodospirillum rubrum with bacterial membranes

The interaction of dinitrogenase reductase-activating glycohydrolase (DRAG) with bacterial membranes and the solubilization of DRAG in response to nucleotides were characterized. Purified DRAG from Rhodospirillum rubrum reversibly bound bacterial pellet fractions from Rsp. rubrum and other nitrogen-fixing bacteria. DRAG saturated the membrane fraction of Rsp. rubrum at a concentration of 0.2 mol DRAG/mol bacteriochlorophyll, suggesting that the DRAG-binding species is prevalent in the membrane. DRAG bound poorly to phospholipid vesicles, suggesting a protein requirement for DRAG interaction with the membrane. Guanosine and uridine tri- and di-nucleotides specifically dissociated DRAG from the pellet fractions of Rsp. rubrum and Azotobacter vinelandii, while adenosine nucleotides had no dissociative effect. Guanosine 5′-triphosphate dissociated DRAG from the membrane at a concentration causing 50% dissociation (EC₅₀) of 5.0 ± 0.5 mM; guanosine disphosphate had an EC₅₀ of 15.0 ± 2.0 mM. We propose that GTP is a potential participant in the regulation of DRAG, possibly controlling the extent of DRAG association with the membrane. Received: 2 November 1998 / Accepted: 6 April 1999