3nion-independent conformational ordering in iota-carrageenan: Disorder-order equilibria and dynamics

The equilibria and dynamics of the disorder-to-order transition of the anionic polysaccharide iota-carrageenan have been studied in the presence of tetramethyl-ammonium salts. By the use of a stopped-flow polarimeter, the rate equation and temperature dependence of the observed forward rate-constant were found to accord with a co-operative dimerisation process. Activation parameters for helix nucleation were shown to be independent of the anion for solutions containing tetramethylammonium chloride and bromide, i.e., ΔH^‡ = 1 ±3 kJ.mol⁻¹, ΔS^‡ = −178 ±10 J.mol⁻¹.K⁻¹, ΔG^‡_298K = 54 ±2 kJ.mol⁻¹, and k_nuc,298K = 1880 ±80 dm³.mol⁻¹.s⁻¹. The temperature dependence of optical rotation was also shown to be independent of the anion present.     

Molecular-size determination of xanthan polysaccharide

Hydrodynamic chromatographic separations of xanthan polysaccharide of ultrahigh molecular weight have been obtained by using columns packed with 30-μm, non-porous spheres. From calibration curves of the elution volume versus particle size for spherical, polystyrene latexes, it was found that xanthan is eluted at the same volume as a 0.153-μm diameter sphere. Extremely dilute samples of xanthan (70 p.p.m.) were injected to preclude self-association and aggregate formation. Detection at these low concentrations was accomplished by tagging the xanthan with a fluorescein derivative and using a flow-through fluorometer detector. Flow rates of 1 mL/min yielded run times of ～7 min. Comparison of the accepted molecular conformation of xanthan—a rigid rod-like molecule—with the apparent molecular volume from the spherical-latex calibration indicates that the xanthan molecules are substantially oriented by the flow field in the chromatography column.     

Molecular weight of xanthan polysaccharide

The molecular weight (M_w) and molecular-weight distribution of the extracellular polysaccharide xanthan, synthesized by the bacterium Xanthomonas campestris, have been determined from measurements of the sedimentation coefficient, s_20,itw, and the intrinsic viscosity, [η], with the aid of the Mandelkern-Flory-Scheraga equation. The sedimentation coefficient of native xanthan was measured by band-sedimentation of polysaccharide molecules that had been tagged with a fluorescent group; the fluorescent label permits the use of very low concentrations of polymer. A typical, native-xanthan sample has M_w  15 x 10⁶; the polydispersity index M_w/M_n is 2.8. Measurement of s and [η] for a homologous series of five xanthan samples having M_w ranging from 0.40 to 15 X 10⁶, prepared by sonication of native xanthan, shows that, for low molecular weight, the intrinsic viscosity [η] obeys the relation [η]  KM^1.35. The high value of the Staudinger exponent in this relation demonstrates that xanthan is a rod-like molecule having stiffness similar to that of native DNA, which has a Staudinger exponent of 1.32. Moreover, the absolute values of [η] suggest that xanthan has a mass per unit length of about 1900 daltons/nm, which is twice the mass per unit length of the single-stranded structure proposed from X-ray work.     

Flow birefringence of xanthan and other polysaccharide solutions

A xanthan sample with molecular weight M = 2.2 x 10(6) was investigated in three solvents: bidistilled water, 0.2 M aqueous NaCl and cadoxen by flow birefringence and viscometry methods in dilute solutions. It was shown that the optical shear rate coefficients of xanthan in aqueous and cadoxen media differ by two orders of magnitude. An estimation of xanthan optical anisotropy in different conformational states has been made and compared with values for other polysaccharides: dextran, pullulan, cellulose and chitosan. The process of denaturation and the flow birefringence of renaturated xanthan in aqueous solutions (after heat treatment at 121 degrees C) have also been studied.     

Conformational investigation on the bacterial polysaccharide xanthan

The conformation of xanthan has been investigated as a function of temperature, ionic strength, and polymer concentration. A reversible transition induced by temperature is demonstrated; the melting temperature (T_M) is directly correlated to the total ionic-strength and is independent of the polymer concentration. Measurements of circular dichroism show that the polysaccharide exists in a combination of only two characteristic conformations (random and ordered), regardless of the temperature and the concentrations of salt and polymer. Hydrodynamic measurements show that the hydrodynamic volume of both conformations is almost constant over the range of temperature investigated. The mechanism proposed by Morris for melting is confirmed, and a multichain process is excluded. The birefringence stability of the concentrated solutions is discussed.     

Sodium and calcium counterion activity in the presence of xanthan polysaccharide

This work concerns the activity coefficient determination for sodium and calcium ions in a semi-dilute solution of xanthan when they are mixed in various ratios, and their correlation with the conformational structures. From these values we show that the conformation can be related to the dissociation of the polymer carboxylic acid sites. Below an apparent dissociation coefficient of about 0.29, the conformation is ordered and above 0.55 the xanthan conformation is entirely disordered. The value of the counterion activity coefficient in pure solution of sodium or calcium xanthan salts agrees fairly well with the theoretical ones derived from Manning's and Lifson-Katchalsky's theories if we make the assumption that the Na form is a stretched coil and the Ca form a single fivefold helix.     

Physiological adaption in the synthesis of the extracellular polysaccharide xanthan

Xanthan overproduction only takes place if a sugar which may serve as precursor is present and transition to limited growth occured. This transient phase is characterized by a change in composition of macromolecular cell components (RNA, protein, carbohydrates). During the transient phase nearly no nitrogen is consumed, whereas glucose and oxygen consumption proceeds nearly undisturbed. The changes observed in the transient phase are discussed in context with physiological adaption.     

Enzymic hydrolysis of the bacterial polysaccharide xanthan by cellulase

In this paper the mechanism of enzymic hydrolysis by a cellulase on xanthan is investigated. It is demonstrated that in salt free solution there is a random breakdown of the main chain when the polysaccharide is in the unordered conformation. The apparent rate of hydrolysis followed by the decrease of the solution viscosity depends on the quality of the solution. In addition, the rate of hydrolysis may be directly correlated with the degree of local order expressed by its specific rotary power. It is shown that there is no hydrolysis on the ordered helical conformation.     

The pyruvate content of xanthan polysaccharide produced under oxygen limitation

Summary The degree of pyruvylation of the xanthan side chains decreased strongly when the microbial oxygen demand was not met. There was no significant dependence on the growth rate.     

The molecular weight of xanthan polysaccharide produced under oxygen limitation

Summary The molecular weight distributions of xanthan polysaccharide were determined by size-exclusion chromatography during batch fermentations in a bubble column. Xanthan with lower weight-mean molecular weight M _W ^* was formed after growth had ceased. Under oxygen limitation, M _W ^* decreased linearly with the specific oxygen uptake rate resulting in lower viscosity yield of the product.     

Thermally induced conformational transition of double-stranded xanthan in aqueous salt solutions.

The thermally induced conformational transition of double-stranded xanthans (degree of pyruvate substitution, DSp = 0.45) having Mw = 3.1, 5.7, and 20.3 x 10(5) has been studied in aqueous salt solutions by high-sensitivity differential scanning calorimetry (DSC). The double strandedness of these samples in the ordered conformation was ascertained by the value of mass per unit length, ML = 2090 +/- 270 g mol-1 nm-1, which was determined from the contour length obtained by electron microscopic observations and the molecular weight by light scattering measurements. The temperature at half completion of the transition T 1/2 for these samples increased linearly with the logarithm of the cation (Na+, K+) concentration. The plot of 1/T1/2 vs the natural logarithm of cation (Na+) concentration in mM for the sample with Mw = 5.7 x 10(5) (15-SX) yielded the equation 10(3)/T1/2 = 3.45-0.159 ln [Na+]. The specific enthalpy delta hcal for 15-SX, essentially independent of salt concentration above 20 mM, was 8.31 +/- 0.39 J/g (SD, n = 6). No systematic dependence of molecular weight on the transition temperature and the enthalpy was observed. Application of the Manning polyelectrolyte theory to the system using the DSC data suggested that the separation of the double strand of xanthan into two single chains was not completed at the temperature where the endothermic peak was finished. This suggestion is consistent with recent findings by light scattering measurements as a function of temperature. Our DSC study was extended to include four other samples from various sources. It was found that T1/2 and delta hcal depend on the pyruvate contents of the samples. For example, the t1/2 (t1/2/degrees C = T1/2/K - 237.15) values for samples with high pyruvate content (DSp = 0.9) and depyruvated (DSp = 0.14) in 20 mM aqueous NaCl were 48.8 and 85.3 degrees C, respectively. Two other samples showed relatively broad DSC curves having shoulders, which were resolved into two independent components. Thermodynamic parameters for each component were examined as a function of salt concentration, and the results obtained were interpreted in terms of the heterogeneity of the pyruvate content of the samples.     

Thermal stability and chain conformational studies of xanthan at different ionic strengths

The aim of the present study was to determine the influence of the ionic strength on the thermal stability of xanthan, i.e. xanthan resistance to chain breaking at high temperatures. Xanthan solutions of various ionic strengths were kept at 80, 90 and 95°C for periods up to 95 h. The thermal stability was determined by measuring the intrinsic viscosity after the heating periods. The experiments showed a critical ionic strength for the thermal stability of xanthan between 10 and 100 mm NaCl or KCl in this temperature range. Below the critical ionic strength the intrinsic viscosity was rapidly reduced, whereas above the critical ionic strength the intrinsic viscosity was virtually unaffected by heating.We then looked for a possible correlation between thermal stability and secondary structure of xanthan. The transition ionic strength (I_m) of xanthan solutions, i.e. where xanthan is midway between an ordered and a disordered structure, was determined by NMR at constant temperatures. I_m was found to be in the range of 24 mm at 80°C to 60 mm NaCl at 95°C, thus lying in the range of the critical ionic strength of the thermal stability. This suggests a close relationship between thermal stability and secondary structure of xanthan, indicated by the enhanced thermal stability in the ordered state. We believe this enhanced thermostability arises from a double-stranded conformation in the ordered state, as in DNA. The presence of double-stranded xanthan is also indicated by electron micrographs taken at both high and low ionic strengths.The transition temperature (T_m) of xanthan was determined by NMR and optical rotation measurements. At the ionic strength of 7·5 mm the two methods resulted in T_m values of 67 and 52°C respectively. This difference in T_m can possibly be due to the fact that the observed NMR and optical rotation (OR) effects are caused by different molecular phenomena.     

A rheological study of the order-disorder conformational transition of xanthan gum

The rheological properties of a moderately concentrated solution of xanthan gum in both the ordered and the disordered state have been studied. Oscillatory shear, steady shear flow, and extensional flow experiments have been performed at different temperatures, covering the order-disorder transition determined by differential scanning calorimetry (DSC). The principle of time/temperature superposition was applied to the xanthan solutions for the different types of flow. Although a master curve covering six decades of frequency could be obtained for the storage modulus over the entire investigated temperature range, less agreement was found for the other modulus. This indicates that the order-disorder transition reflects changes on the molecular scale and slight modification of the physical network structure. To the authors' knowledge, this is the first time that this transition has been observed using these different rheological techniques.     

Influence of acetyl and pyruvate substituents on the solution properties of xanthan polysaccharide

Xanthan, an exocellular polysaccharide produced by the plant pathogenic bacterium Xanthomonas campestris has been the subject of considerable interest in recent years because of its unusual rheological properties in solution ('weak gel') and consequent range of applications. The polymer consists of a cellulosic backbone with trisaccharide side chains linked to alternate backbone residues; acetyl and pyruvate substituents are carried in variable amounts on these side chains. In this study a series of xanthans differing in the percentage of substituent groups and in molecular weight range have been prepared by culturing a variety of different strains of X. campestris. All of the xanthans have been characterized by a range of physicochemical techniques. In particular, the intrinsic viscosities at low shear rates, and at a range of ionic strengths, have been determined and the geometric persistence lengths evaluated by the Smidsr?d-Haug method. Intensity light scattering measurements have been made using the procedure of Coviello and co-workers to promote molecular dispersion. Despite significant differences in the acetyl and pyruvate contents, the molecular weight vs mean square radius behaviour of our samples did not differ substantially from each other or from those reported for other xanthan samples in the literature. The persistence length, determined by the method of Schmidt et al. (120 +/- 8 nm) was also, within experimental error, the same for all the samples measured. These values differed considerably from those calculated from the ionic strength dependence of intrinsic viscosity (the Smidsr?d-Haug method) was reported by Tinland and Rinaudo and calculated for our samples.(ABSTRACT TRUNCATED AT 250 WORDS)     

Global conformational dynamics in ras

Ras and its homologues are central to regulation of a multitude of cellular processes. Ras in complex with GTP binds and activates its downstream signaling partners. (31)P NMR studies indicated that the Ras-GTP conformation is heterogeneous on a millisecond time scale, but details of its conformational dynamics remain unknown. Here we present evidence that the conformational exchange process in human H-Ras complexed with GTP mimic GppNHp is global, encompassing most of the GTPase catalytic domain. The correlated character of conformational dynamics in Ras opens opportunities for understanding allosteric effects in Ras function.     

Application of conductivity studies and polyelectrolyte theory to the conformation and order-disorder transition of xanthan polysaccharide

The conductivity of xanthan (extracellular polysaccharide from Xanthomonas campestris) in the potassium salt form has been studied over the temperature range 5–80°C spanning the order-disorder conformational transition. In salt-free solution data analysis using Manning's polyelectrolyte-conductivity theory gives a charge spacing, b, of 0.58±0.04 nm for the low temperature ordered form, consistent with a single rather than a double helix (b=0.58 and 0.29 nm respectively). In solutions with 0.01 M added KBr the increase in counterion condensation on conformational ordering is found from conductivity studies to be — ^–1= 0.20 ± 0.02, in good agreement with the value 0.20±0.02 using polyelectrolyte-equilibrium theory for the variation of transition-midpoint temperature with added salt determined from opticalrotation data.     

Photon transmission study on conformational ordering of iota-carrageenan in CaCl2 solution

Coil-to-double helix (c-h) and double helix-to-dimer (h-d) phase transitions of iota-carrageenan in CaCl(2) solution upon cooling were studied using photon transmission technique. Photon transmission intensity, I(tr) was monitored against temperature to determine the (c-h) and (h-d) transition temperatures (T(ch) and T(hd)) and activation energies (DeltaE(ch) and DeltaE(hd)). An extra dimer-to-dimer (d-d) transition was also observed during cooling at low temperature region. However, upon heating dimers disappear to double helices by making dimer-to-double helix (d-h) transition. Further heating resulted double helix-to-coil (h-c) transition at high temperature region. T(dh) and T(ch) temperatures and DeltaE(dh) and DeltaE(hc) activation energies were also determined. It was observed that T(hc) and T(ch) temperatures and DeltaE(dh) and DeltaE(hd) activation energies do not effected by carrageenan content. However, T(hd), T(dh) and T(dd) temperatures and DeltaE(ch) and DeltaE(hc) activation energies were found to be strongly correlated to the carrageenan content in the system.     

Quantitative studies of ribosome conformational dynamics

The ribosome is a dynamic machine that undergoes many conformational rearrangements during the initiation of protein synthesis. Significant differences exist between the process of protein synthesis initiation in eubacteria and eukaryotes. In particular, the initiation of eukaryotic protein synthesis requires roughly an order of magnitude more initiation factors to promote efficient mRNA recruitment and ribosomal recognition of the start codon than are needed for eubacterial initiation. The mechanisms by which these initiation factors promote ribosome conformational changes during stages of initiation have been studied using cross-linking, footprinting, site-directed probing, cryo-electron microscopy, X-ray crystallography, fluorescence spectroscopy and single-molecule techniques. Here, we review how the results of these different approaches have begun to converge to yield a detailed molecular understanding of the dynamic motions that the eukaryotic ribosome cycles through during the initiation of protein synthesis.