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Definition of a New Information-Based Per-Residue Quality Parameter
Authors:Sander?B?Nabuurs  Elmar?Krieger  Chris?A?E?M?Spronk  Aart?J?Nederveen  Gert?Vriend  Email author" target="_blank">Geerten?W?VuisterEmail author
Affiliation:(1) Center for Molecular and Biomolecular Informatics, NCMLS, Radboud University Nijmegen, Toernooiveld 1, 6525, ED, Nijmegen, The Netherlands;(2) Department of NMR spectroscopy, University of Utrecht, Padualaan 8, 3584, CH, Utrecht, The Netherlands;(3) Department of Biophysical Chemistry, IMM, Radboud University Nijmegen, Toernooiveld 1, 6525, ED, Nijmegen, The Netherlands
Abstract:For biomolecular NMR structures typically only a poor correspondence is observed between statistics derived from the experimental input data and structural quality indicators obtained from the structure ensembles. Here, we investigate the relationship between the amount of available NMR data and structure quality. By generating datasets with a predetermined information content and evaluating the quality of the resulting structure ensembles we show that there is, in contrast to previous findings, a linear relation between the information contained in experimental data and structural quality. From this relation, a new quality parameter is derived that provides direct insight, on a per-residue basis, into the extent to which structural quality is governed by the experimental input data.
Keywords:molecular dynamics  NMR  protein structure  structure validation  structure refinement
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