千里光过氧化物酶基因的SSR标记及序列分析

目的研究千里光过氧化物酶(peroxidase,POD)基因结构特征和功能的关系,并根据其核苷酸序列设计SSR引物,进一步验证其在多个千里光地方种中的多态性。方法从千里光全长c DNA文库中分离到POD全长序列,运用系列生物信息学软件进行核苷酸与氨基酸的序列特征分析,分析序列中的SSR位点并对多个千里光品系进行PAGE检测和验证。结果基因具有典型的POD结构特征,表现出高度的保守性。PAGE电泳显示该引物在不同地方品系的千里光中扩增稳定,且存在明显多态性。结论研究结果拓展了对千里光POD基因序列和功能的认识,新开发标记能有效应用于POD基因的检测和育种鉴定,同时也可为其他物种的POD研究提供参考。

Sequence analysis and SSR marker mining of a peroxidase gene in Senecio scandens

Objective To study the relationship between the sequence structure and function of a peroxidase gene (POD) and mine and confirm SSR locus of this gene in Senecio scandens. Methods A POD gene was obtained from full-length cDNA library of S. scandens. Then a series of online bioinformatics tools were used to analyze nucleic acid sequence and amino acid structure of this gene. According to its nucleotide sequence, one SSR locus was searched and a pair of primers were designed. The PAGE electrophoresis confirmed that this primer pair had polymorphism among several landraces. Results The target gene had the structural characteristics of typical PODs. It showed a high conservation in functional domains. PAGE electrophoresis showed that the primer could be stably amplified in different landraces with obvious polymorphisms. Conclusion The results expanded the understanding of the function and sequence of a POD in S. scandens. The newly developed marker could be effectively applied to the detection of POD gene and breeding projects, and it also provided reference for POD researches of other species.