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Meta-analysis of genome-wide association studies identifies three new risk loci for atopic dermatitis
Authors:Paternoster Lavinia  Standl Marie  Chen Chih-Mei  Ramasamy Adaikalavan  Bønnelykke Klaus  Duijts Liesbeth  Ferreira Manuel A  Alves Alexessander Couto  Thyssen Jacob P  Albrecht Eva  Baurecht Hansjörg  Feenstra Bjarke  Sleiman Patrick M A  Hysi Pirro  Warrington Nicole M  Curjuric Ivan  Myhre Ronny  Curtin John A  Groen-Blokhuis Maria M  Kerkhof Marjan  Sääf Annika  Franke Andre  Ellinghaus David  Fölster-Holst Regina  Dermitzakis Emmanouil  Montgomery Stephen B  Prokisch Holger  Heim Katharina  Hartikainen Anna-Liisa  Pouta Anneli  Pekkanen Juha  Blakemore Alexandra I F  Buxton Jessica L  Kaakinen Marika  Duffy David L
Affiliation:Medical Research Council Centre for Causal Analyses in Translational Epidemiology, University of Bristol, Bristol, UK.
Abstract:Atopic dermatitis (AD) is a commonly occurring chronic skin disease with high heritability. Apart from filaggrin (FLG), the genes influencing atopic dermatitis are largely unknown. We conducted a genome-wide association meta-analysis of 5,606 affected individuals and 20,565 controls from 16 population-based cohorts and then examined the ten most strongly associated new susceptibility loci in an additional 5,419 affected individuals and 19,833 controls from 14 studies. Three SNPs reached genome-wide significance in the discovery and replication cohorts combined, including rs479844 upstream of OVOL1 (odds ratio (OR) = 0.88, P = 1.1 × 10(-13)) and rs2164983 near ACTL9 (OR = 1.16, P = 7.1 × 10(-9)), both of which are near genes that have been implicated in epidermal proliferation and differentiation, as well as rs2897442 in KIF3A within the cytokine cluster at 5q31.1 (OR = 1.11, P = 3.8 × 10(-8)). We also replicated association with the FLG locus and with two recently identified association signals at 11q13.5 (rs7927894; P = 0.008) and 20q13.33 (rs6010620; P = 0.002). Our results underline the importance of both epidermal barrier function and immune dysregulation in atopic dermatitis pathogenesis.
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