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1.
Bacterial Community of Koumiss from Mongolia Investigated by Culture and Culture-Independent Methods
Einar Ringø Renate Andersen Sigmund Sperstad Zhigang Zhou Pen Ren Eva Marie Breines 《Food Biotechnology》2014,28(4):333-353
The bacterial community of fermented horse milk (koumiss) from Mongolia was studied using three methods: cultivation, direct identification by 16S rRNA clone library and denaturing gradient gel electrophoresis (DGGE). Ninety-eight strains were isolated by traditional cultivation and 61 of those were randomly selected for further identification by 16S rRNA gene sequencing. The strains were dominated by lactic acid bacteria (LAB; six different lactobacilli), Acinetobacter, Bacillus and Psychrobacter. Construction of the clone library analysis revealed that 16S sequences of 220 clones, genus Lactobacillus was dominant, but Streptococcus thermophilus, Acetobacter pasteurianus and uncultured clones were also detected. Ten unique bands were sequenced from the DGGE and revealed: Lactococcus lactis, Lactococcus lactis subsp. lactis, Clostridium acidurici, Acinetobacter johnsonii, Dickeya sp., Enterobacter sp., Pseudomonas sp., Raoultella sp., and Ruminococcus sp.. In vitro growth inhibition of three human pathogens, Escherichia coli, Enterobacter sakazakii and Staphylococcus aureus by 14 culturable bacteria displayed that only three of the isolates tested inhibit growth of E. sakazakii while most of the other bacteria delayed growth of the target bacteria. 相似文献
2.
One Question,Multiple Answers: Biochemical and Biophysical Screening Methods Retrieve Deviating Fragment Hit Lists 下载免费PDF全文
Dr. Johannes Schiebel Nedyalka Radeva Dr. Helene Köster Dr. Alexander Metz Timo Krotzky Dr. Maren Kuhnert Prof. Wibke E. Diederich Prof. Andreas Heine Dr. Lars Neumann Dr. Cedric Atmanene Dominique Roecklin Dr. Valérie Vivat‐Hannah Dr. Jean‐Paul Renaud Dr. Robert Meinecke Dr. Nina Schlinck Dr. Astrid Sitte Franziska Popp Dr. Markus Zeeb Prof. Gerhard Klebe 《ChemMedChem》2015,10(9):1511-1521
Fragment‐based lead discovery is gaining momentum in drug development. Typically, a hierarchical cascade of several screening techniques is consulted to identify fragment hits which are then analyzed by crystallography. Because crystal structures with bound fragments are essential for the subsequent hit‐to‐lead‐to‐drug optimization, the screening process should distinguish reliably between binders and non‐binders. We therefore investigated whether different screening methods would reveal similar collections of putative binders. First we used a biochemical assay to identify fragments that bind to endothiapepsin, a surrogate for disease‐relevant aspartic proteases. In a comprehensive screening approach, we then evaluated our 361‐entry library by using a reporter‐displacement assay, saturation‐transfer difference NMR, native mass spectrometry, thermophoresis, and a thermal shift assay. While the combined results of these screening methods retrieve 10 of the 11 crystal structures originally predicted by the biochemical assay, the mutual overlap of individual hit lists is surprisingly low, highlighting that each technique operates on different biophysical principles and conditions. 相似文献
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Véronique B. Schwartz Franck Thétiot Sandra Ritz Sabine Pütz Lars Choritz Alexandros Lappas Renate Förch Katharina Landfester Ulrich Jonas 《Advanced functional materials》2012,22(11):2376-2386
Despite multiple research approaches to prevent bacterial colonization on surfaces, device‐associated infections are currently responsible for about 50% of nosocomial infections in Europe and significantly increase health care costs, which demands development of advanced antibacterial surface coatings. Here, novel antimicrobial composite materials incorporating zinc oxide nanoparticles (ZnO NP) into biocompatible poly(N‐isopropylacrylamide) (PNIPAAm) hydrogel layers are prepared by mixing the PNIPAAm prepolymer with ZnO NP, followed by spin‐coating and photocrosslinking. Scanning electron microscopy (SEM) characterization of the composite film morphology reveals a homogeneous distribution of the ZnO NP throughout the film for every applied NP/polymer ratio. The optical properties of the embedded NP are not affected by the matrix as confirmed by UV‐vis spectroscopy. The nanocomposite films exhibit bactericidal behavior towards Escherichia coli (E. coli) for a ZnO concentration as low as ≈0.74 μg cm?2 (1.33 mmol cm?3), which is determined by inductively coupled plasma optical emission spectrometry. In contrast, the coatings are found to be non‐cytotoxic towards a mammalian cell line (NIH/3T3) at bactericidal loadings of ZnO over an extended period of seven days. The differential toxicity of the ZnO/hydrogel nanocomposite thin films between bacterial and cellular species qualifies them as promising candidates for novel biomedical device coatings. 相似文献
6.
Cai M Zhao Z Yin Z Ahrens L Huang P Cai M Yang H He J Sturm R Ebinghaus R Xie Z 《Environmental science & technology》2012,46(2):661-668
Perfluoroalkyl compounds (PFCs) were determined in 22 surface water samples (39-76°N) and three sea ice core and snow samples (77-87°N) collected from North Pacific to the Arctic Ocean during the fourth Chinese Arctic Expedition in 2010. Geographically, the average concentration of ∑PFC in surface water samples were 560 ± 170 pg L(-1) for the Northwest Pacific Ocean, 500 ± 170 pg L(-1) for the Arctic Ocean, and 340 ± 130 pg L(-1) for the Bering Sea, respectively. The perfluoroalkyl carboxylates (PFCAs) were the dominant PFC class in the water samples, however, the spatial pattern of PFCs varied. The C(5), C(7) and C(8) PFCAs (i.e., perfluoropentanoate (PFPA), perfluoroheptanoate (PFHpA), and perfluorooctanoate (PFOA)) were the dominant PFCs in the Northwest Pacific Ocean while in the Bering Sea the PFPA dominated. The changing in the pattern and concentrations in Pacific Ocean indicate that the PFCs in surface water were influenced by sources from the East-Asian (such as Japan and China) and North American coast, and dilution effect during their transport to the Arctic. The presence of PFCs in the snow and ice core samples indicates an atmospheric deposition of PFCs in the Arctic. The elevated PFC concentration in the Arctic Ocean shows that the ice melting had an impact on the PFC levels and distribution. In addition, the C(4) and C(5) PFCAs (i.e., perfluorobutanoate (PFBA), PFPA) became the dominant PFCs in the Arctic Ocean indicating that PFBA is a marker for sea ice melting as the source of exposure. 相似文献
7.
Frank Diatze Karsten Gloe Renate Jacobi Peter Mūni Jörg Beger Michael Petrich 《溶剂提取与离子交换》2013,31(2):223-247
The complex forming and extraction properties of various open-chain and two cyclic oxathia alkanes towards silver have been studied. The investigations confirm the direct proportionality between extraction constants and related complex stability constants.The extraction of silver by open-chain oxethie alkenee is greeter than by structurally analogoue thicacrown compounds. This fact and the determined stability constants show an absence of a macrocyclic effect during complex formation. The differences of extraction power between the various open-chain compounds can be interpreted on the basic o f the coordinative saturation and stereochemiatry of the silver ion, on the size o f the poesible chelate rings, and on the complexing capability o f the ether oxygen atoms. 相似文献
8.
Marceau Kristine; Ram Nilam; Houts Renate M.; Grimm Kevin J.; Susman Elizabeth J. 《Canadian Metallurgical Quarterly》2011,47(5):1389
Pubertal development is a nonlinear process progressing from prepubescent beginnings through biological, physical, and psychological changes to full sexual maturity. To tether theoretical concepts of puberty with sophisticated longitudinal, analytical models capable of articulating pubertal development more accurately, we used nonlinear mixed-effects models to describe both the timing and tempo of pubertal development in the sample of 364 White boys and 373 White girls measured across 6 years as part of the National Institute of Child Health and Human Development Study of Early Child Care and Youth Development. Individual differences in timing and tempo were extracted with models of logistic growth. Differential relations emerged for how boys' and girls' timing and tempo of development were related to physical characteristics (body mass index, height, and weight) and psychological outcomes (internalizing problems, externalizing problems, and risky sexual behavior). Timing and tempo are associated in boys but not girls. Pubertal timing and tempo are particularly important for predicting psychological outcomes in girls but only sparsely related to boys' psychological outcomes. Results highlight the importance of considering the nonlinear nature of puberty and expand the repertoire of possibilities for examining important aspects of how and when pubertal processes contribute to development. (PsycINFO Database Record (c) 2011 APA, all rights reserved) 相似文献
9.
Martin Dippe Renate Ulbrich-Hofmann 《Journal of the American Oil Chemists' Society》2010,87(9):1005-1011
In addition to the hydrolysis of the terminal phosphate ester bond in glycerophospholipids, phospholipases D (PLDs) are able
to catalyze the exchange of the polar head group. The biocatalytic potential of PLDs strongly depends on the ratio of the
transphosphatidylation to hydrolysis rate which, therefore, is an important criterion in the screening for efficient PLDs
from natural sources or combinatorial DNA libraries. Here, we present a fast spectrophotometric assay that allows the determination
of the rate of both hydrolysis and transphosphatidylation of PLD-containing solutions including cell extracts in one microtiterplate.
The assay is based on the reaction of phosphatidylcholine solubilized in Triton X-100 micelles with ethanolamine and the determination
of phosphatidic acid (PA) and choline. PA is determined via Fe(III) complexation and represents hydrolysis, while choline
is determined by the conventional choline oxidase/peroxidase assay and yields the total conversion. The difference between
both values corresponds to the transphosphatidylation product. The method is suitable for measuring reactions rates as well
as product yields after defined time periods. As shown for E. coli cells expressing PLD from cabbage, the assay can be applied to extracts of cells grown and lysed in microtiterplates. 相似文献
10.
Volkmar Lankau Hans-Peter Martin Renate Hempel-Weber Niels Oeschler Alexander Michaelis 《Journal of Electronic Materials》2010,39(9):1809-1813
SiC-B4C composites with various values of SiC-to-B4C ratio and grain size were fabricated by pressureless sintering. This paper presents the results of current investigations
of this composite material. This includes the parameters of manufacture (shrinkage, density, and open porosity), thermoelectric
properties (electrical and thermal conductivity, and thermopower), and material characterization (x-ray diffraction, scanning
electron microscopy, oxidation resistance, and thermal expansion). The results indicate high potential of this composite as
an alternative material for thermoelectric applications at high temperatures. The Seebeck coefficient of the composite was
higher than that of the single-component materials B4C and SiC and reached 400 μV/K at 500°C. 相似文献